mRNA_S-firma_F_contig1062.848.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_S-firma_F_contig1062.848.1
Unique Name	mRNA_S-firma_F_contig1062.848.1
Type	mRNA
Organism	Sphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)

Homology

[Close]

BLAST of mRNA_S-firma_F_contig1062.848.1 vs. uniprot
Match: A0A6H5KL39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL39_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.840e-13
Identity = 66/163 (40.49%), Postives = 83/163 (50.92%), Query Frame = 1

Query:  196 MLIMIRGT-AVLLLLAAVDQASGFVSTKRNHR----RPIT--TVDVGLGVPA------TPMLERLTLSQHSSVSFESPAARAAAVDRWSKRVRPAASKWPSSGRGGRHDEARQVEAEVEAEVVQPRPGMATQLGGWSYARTVFSNLGKSKSNDGDGGDASSTD 645
            ML+ +R   A  +LLA VDQ SGF+ST+R H      P T  +   G G+ +      +  ++ LTLS+ S   FES AARA        R   A  +   S RGG +              VQPRPGM TQLGGWSYARTV +NL K    +G+GG   S D
Sbjct:    1 MLMTLRAAMAAAVLLATVDQTSGFISTRRRHHGLSSSPGTRHSYSGGDGLASGGAQLTSTTVDHLTLSRESPYPFESSAARAV-------RGLVATKRSKRSSRGGGN-----------GATVQPRPGMETQLGGWSYARTVLTNLSKGAGREGEGGTEESGD 145

[Close]

BLAST of mRNA_S-firma_F_contig1062.848.1 vs. uniprot
Match: D8LN57_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN57_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 5.460e-11
Identity = 65/167 (38.92%), Postives = 81/167 (48.50%), Query Frame = 1

Query:  196 MLIMIR-GTAVLLLLAAVDQASGFVS-------------TKRNHRRPITTVDVGLGVPATPMLERLTLSQHSSVSFESPAARAAAVDRWSKRVRPAASKWPSSGRGGRHDEARQVEAEVEAEVVQPRPGMATQLGGWSYARTVFSNLGKSKSNDGDGGDASSTDSSG 654
            ML+++R   A   LLAAVDQASGFVS             T+ ++         G  + +T  ++ LTLS+ S   FES AAR         R   A  +   S RGG +              VQPRPGM TQLGGWSYARTV +NL K    +G+ G    TD SG
Sbjct:    1 MLMILRTAMAAAALLAAVDQASGFVSXXXXXXXXXXSPGTRHSYNGGDGLASGGAPLTST-TVDHLTLSRESPYPFESSAARTV-------RGLVATQRSKRSNRGGGN-----------GATVQPRPGMETQLGGWSYARTVLTNLSKGAGREGESG----TDESG 144

The following BLAST results are available for this feature:

BLAST of mRNA_S-firma_F_contig1062.848.1 vs. uniprot

BLAST of mRNA_S-firma_F_contig1062.848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5KL39_9PHAE	1.840e-13	40.49	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LN57_ECTSI	5.460e-11	38.92	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-firma_F_contig1062	contig	S-firma_F_contig1062:23015..25651 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90	2022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female	2021-02-24

Properties


Property Name	Value
Seed ortholog	2880.D8LN57
PFAMs	PUB,TPR_20,Thioredoxin
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03671
KEGG Pathway	ko04621,ko05418,map04621,map05418
Evalue	1.73e-11
EggNOG OGs	COG0526@1\|root,KOG0910@2759\|Eukaryota
Description	glycerol ether metabolic process
COG category	O
BRITE	ko00000,ko00001,ko03110
Hectar predicted targeting category	signal peptide
Exons	5
Model size	783
Cds size	588
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_S-firma_F_contig1062.848.1	prot_S-firma_F_contig1062.848.1	Sphaerotrichia firma ET2_F female	polypeptide	S-firma_F_contig1062 23210..25651 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815601.227537-UTR-S-firma_F_contig1062:23014..23209	1622815601.227537-UTR-S-firma_F_contig1062:23014..23209	Sphaerotrichia firma ET2_F female	UTR	S-firma_F_contig1062 23015..23209 +
1696949445.722103-UTR-S-firma_F_contig1062:23014..23209	1696949445.722103-UTR-S-firma_F_contig1062:23014..23209	Sphaerotrichia firma ET2_F female	UTR	S-firma_F_contig1062 23015..23209 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815601.2402573-CDS-S-firma_F_contig1062:23209..23304	1622815601.2402573-CDS-S-firma_F_contig1062:23209..23304	Sphaerotrichia firma ET2_F female	CDS	S-firma_F_contig1062 23210..23304 +
1696949445.734033-CDS-S-firma_F_contig1062:23209..23304	1696949445.734033-CDS-S-firma_F_contig1062:23209..23304	Sphaerotrichia firma ET2_F female	CDS	S-firma_F_contig1062 23210..23304 +
1622815601.2542493-CDS-S-firma_F_contig1062:23921..24017	1622815601.2542493-CDS-S-firma_F_contig1062:23921..24017	Sphaerotrichia firma ET2_F female	CDS	S-firma_F_contig1062 23922..24017 +
1696949445.7517023-CDS-S-firma_F_contig1062:23921..24017	1696949445.7517023-CDS-S-firma_F_contig1062:23921..24017	Sphaerotrichia firma ET2_F female	CDS	S-firma_F_contig1062 23922..24017 +
1622815601.2669983-CDS-S-firma_F_contig1062:24280..24432	1622815601.2669983-CDS-S-firma_F_contig1062:24280..24432	Sphaerotrichia firma ET2_F female	CDS	S-firma_F_contig1062 24281..24432 +
1696949445.7652311-CDS-S-firma_F_contig1062:24280..24432	1696949445.7652311-CDS-S-firma_F_contig1062:24280..24432	Sphaerotrichia firma ET2_F female	CDS	S-firma_F_contig1062 24281..24432 +
1622815601.2780843-CDS-S-firma_F_contig1062:24978..25083	1622815601.2780843-CDS-S-firma_F_contig1062:24978..25083	Sphaerotrichia firma ET2_F female	CDS	S-firma_F_contig1062 24979..25083 +
1696949445.7802746-CDS-S-firma_F_contig1062:24978..25083	1696949445.7802746-CDS-S-firma_F_contig1062:24978..25083	Sphaerotrichia firma ET2_F female	CDS	S-firma_F_contig1062 24979..25083 +
1622815601.2879837-CDS-S-firma_F_contig1062:25511..25651	1622815601.2879837-CDS-S-firma_F_contig1062:25511..25651	Sphaerotrichia firma ET2_F female	CDS	S-firma_F_contig1062 25512..25651 +
1696949445.7917113-CDS-S-firma_F_contig1062:25511..25651	1696949445.7917113-CDS-S-firma_F_contig1062:25511..25651	Sphaerotrichia firma ET2_F female	CDS	S-firma_F_contig1062 25512..25651 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at S-firma_F_contig1062:23015..25651+
coding sequence from alignment at S-firma_F_contig1062:23015..25651+

protein sequence of mRNA_S-firma_F_contig1062.848.1

>prot_S-firma_F_contig1062.848.1 ID=prot_S-firma_F_contig1062.848.1|Name=mRNA_S-firma_F_contig1062.848.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=196bp
MLIMIRGTAVLLLLAAVDQASGFVSTKRNHRRPITTVDVGLGVPATPMLE
RLTLSQHSSVSFESPAARAAAVDRWSKRVRPAASKWPSSGRGGRHDEARQ
VEAEVEAEVVQPRPGMATQLGGWSYARTVFSNLGKSKSNDGDGGDASSTD
SSGAAHGAPASAAGGSGGGASGDDHSKSTHGAKASSKAGEGEKGQG

mRNA from alignment at S-firma_F_contig1062:23015..25651+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_S-firma_F_contig1062.848.1 ID=mRNA_S-firma_F_contig1062.848.1|Name=mRNA_S-firma_F_contig1062.848.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2637bp|location=Sequence derived from alignment at S-firma_F_contig1062:23015..25651+ (Sphaerotrichia firma ET2_F female)
GAGAGCTCCTTGGCAGCAACTGAAGCGAGCGCCTTACTGAGAAGGAGTGG
CAGAAATCCTCCAGCGGGGAAGCGGGGAAAGCATTGCCTTTGCAGAAGAG
GCGCTCAGTTTGGCGGAAGACAACAGGTCTCGCGCCTGTGAGGGGACCAA
ACGTTCAACTGCAGCGGAAGAGGACACGTGTGGGGGCGCTGCTGCATGCT
CATCATGATCCGCGGGACGGCGGTGCTGCTGCTGCTTGCTGCAGTGGATC
AGGCGTCTGGCTTCGTCAGTACCAAGCGTAACCACCGCAGGTGTGTTTTT
GGCTAGGTTGCGGAATTGTTGAGTGCCAACACCGCGCATGGAAACGCAGC
TAACTGCGACATGTGTGAGGCTCGTATCATGCGAGCCAGCGCGCGCGCGG
GCATGGTTGTGTGCGGATGGCGCTACTGTTTTGCTGCTCCGCGCTTCTAC
AGAGGCGCACTTCAGAGTTTTTCTCTGTCGTTTATGCCCCCTGTAGTCTG
TTGAACATGCACGATTGCTCTATCTGCTCTGTCTGTGGACACACATGCAC
CCGTTATGTAGCAGCGGCAACACCGATAGAGACCCGCACGTTTACCTGCG
GCGCCAAATGCTGTTCTTGTAGCGTCACCAGGGAGCTACGTGCAGTGGGT
GCAGTAATGTTATGGTGCTGGGTACGATCTTGATGTGCTTGCTGAGCGCT
AACTGCTGCTGCCGCCTCCAGCGATGGATTGCCATTTTCATAACGTCTAG
CTGTCTAACGGTGTGTTGCTGCTGCTGAGACTCGAGACGAGACTCTCCCG
GCTCACGTTTACCACAGATACGCTGCTGCAACATGCTTTGCTGTGCCGCG
CTTGCTGACCGCTGCCTGCCGCCGCTGCCTCCACCTCCTACGCTGCCGTT
TTTGAAGGCCGATAACGACAGTCGATGTCGGCTTGGGAGTCCCTGCCACC
CCGATGCTCGAGCGCCTGACTCTCTCCCAGCATTCATCTGTCTCCTTCGA
GAGGTGGGTACGCGTGGCGACTGGCCCTGTTTTAGACGAGAGCTTCCACT
TCTCTACAACGCGCAAGGCATCGTCTATGTGCATAGCTCTGCCGTGTTCG
TGGCTAGAGACGTTTCCTGACAGCTCTTGGTGCTTCTTTCTTCGTAACCA
CGTATGGTGGTCAGGAGAGAGGCTTGTCGTCCCTAATGTGTACCATACTT
ATCTTTCGCACCCTGCTGCCACTGCACTGCCTGTGCGCTGCGCTCGCTGC
CGTGATTGCATTCCAGCCCCGCAGCACGGGCAGCAGCAGTGGATCGGTGG
TCGAAAAGAGTTAGACCTGCGGCCTCCAAGTGGCCAAGCTCTGGTCGTGG
GGGCAGGCATGATGAAGCACGCCAGGTGGAGGCGGAGGTAGAGGCGGAGG
TGGTGCAACCAAGACCAGGTACGGTACATACGTGTGTGTGTGTGTGTGTG
AATTCCGCTCTCTCGCTGTCTCTCTGTGTATGTGCCTTGAGTGTCGCTGG
TGGTAGCCTCGAATGTTTGCCTTACCCTTGGAAATTGCGTACATAGACTG
GACGACAACGCACCCCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACA
GCAGCGGAATAAAGCTAGGTCGCCCCGAAAAGCACGCACCACATCACCTA
CATTCTTGGTACATACTGATCGGCAGTAAGGCCAGTTGATTCTCTTTGAC
CTTATAAATAGACCTATATTAGTCCTACCCCTACGTACGCGCTGAACACG
ACAACCGCGCCGACGCTATAGTGCACGGCCAAAGGCCAGTCGCTTCTCCT
TTGCCCGATCCCTCTCCCTGCCTCTCCGTAACCTAACCGTATCCCTAACC
GTACTCCCCCCATCTGCAACACGTCGACATTGACATGCTCGTGTGATCCT
TCCGTTCATAACCCTAACCCTGACCCTATCATCCCCAACTCTAACCCTCG
CCCGCCCCGAGTAGGGATGGCGACGCAGCTGGGTGGTTGGAGCTACGCTC
GGACAGTGTTTTCGAACTTGGGCAAGTCTAAGTCCAACGATGGAGATGGA
GGAGATGCCAGCTCCACCGGTGAGAACTGGTACAGTATTTAACACGTAAC
CCCTTTCATGCCTTGAAAAGGGGGGTTGTTTTGGACGCGCGTCAGCGACT
TGTTGTCCTTTTCGCATTTGGTGCTTTATGTTTTGGTCGGCGTCATGGCT
CCCTCTCCCCTAGTGTTGTTTACCATTCGGAGCGATTCGACATTCCCGAA
CCGCGGTCATTCTCGACAACGTTCGGGACCTCGTAGTGTCGCCCTCTATA
CCCCCCCCCCCCCGCCTCCCCGTTTGGTGAACCGGCCCCTTTATCTTCCT
CCCTCCCCTGCATGAGTCCGTCGTGCTTGATCAAACGCTGTACTCACAAC
AGGTCTTTGCACGTTGGCCGTGCACATGCGACGACGTCAGCCCTCACCCG
CATGCACCCATGTTTCGACTTTTTTTTTGTTTGGTTGTGAGGAGTAGATT
CGAGTGGTGCTGCACACGGCGCACCGGCGTCCGCCGCCGGAGGGTCAGGC
GGCGGTGCCAGCGGCGACGACCACAGCAAATCCACCCACGGTGCCAAGGC
CTCATCTAAGGCCGGGGAGGGGGAGAAAGGCCAGGGG

Coding sequence (CDS) from alignment at S-firma_F_contig1062:23015..25651+

>mRNA_S-firma_F_contig1062.848.1 ID=mRNA_S-firma_F_contig1062.848.1|Name=mRNA_S-firma_F_contig1062.848.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1176bp|location=Sequence derived from alignment at S-firma_F_contig1062:23015..25651+ (Sphaerotrichia firma ET2_F female)
ATGCTCATCATGATCCGCGGGACGGCGGTGCTGCTGCTGCTTGCTGCAGT
GGATCAGGCGTCTGGCTTCGTCAGTACCAAGCGTAACCACCGCAGATGCT
CATCATGATCCGCGGGACGGCGGTGCTGCTGCTGCTTGCTGCAGTGGATC
AGGCGTCTGGCTTCGTCAGTACCAAGCGTAACCACCGCAGGCCGATAACG
ACAGTCGATGTCGGCTTGGGAGTCCCTGCCACCCCGATGCTCGAGCGCCT
GACTCTCTCCCAGCATTCATCTGTCTCCTTCGAGAGGCCGATAACGACAG
TCGATGTCGGCTTGGGAGTCCCTGCCACCCCGATGCTCGAGCGCCTGACT
CTCTCCCAGCATTCATCTGTCTCCTTCGAGAGCCCCGCAGCACGGGCAGC
AGCAGTGGATCGGTGGTCGAAAAGAGTTAGACCTGCGGCCTCCAAGTGGC
CAAGCTCTGGTCGTGGGGGCAGGCATGATGAAGCACGCCAGGTGGAGGCG
GAGGTAGAGGCGGAGGTGGTGCAACCAAGACCAGCCCCGCAGCACGGGCA
GCAGCAGTGGATCGGTGGTCGAAAAGAGTTAGACCTGCGGCCTCCAAGTG
GCCAAGCTCTGGTCGTGGGGGCAGGCATGATGAAGCACGCCAGGTGGAGG
CGGAGGTAGAGGCGGAGGTGGTGCAACCAAGACCAGGGATGGCGACGCAG
CTGGGTGGTTGGAGCTACGCTCGGACAGTGTTTTCGAACTTGGGCAAGTC
TAAGTCCAACGATGGAGATGGAGGAGATGCCAGCTCCACCGGGATGGCGA
CGCAGCTGGGTGGTTGGAGCTACGCTCGGACAGTGTTTTCGAACTTGGGC
AAGTCTAAGTCCAACGATGGAGATGGAGGAGATGCCAGCTCCACCGATTC
GAGTGGTGCTGCACACGGCGCACCGGCGTCCGCCGCCGGAGGGTCAGGCG
GCGGTGCCAGCGGCGACGACCACAGCAAATCCACCCACGGTGCCAAGGCC
TCATCTAAGGCCGGGGAGGGGGAGAAAGGCCAGGGGATTCGAGTGGTGCT
GCACACGGCGCACCGGCGTCCGCCGCCGGAGGGTCAGGCGGCGGTGCCAG
CGGCGACGACCACAGCAAATCCACCCACGGTGCCAAGGCCTCATCTAAGG
CCGGGGAGGGGGAGAAAGGCCAGGGG