mRNA_S-firma_F_contig10608.834.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10608.834.1
Unique NamemRNA_S-firma_F_contig10608.834.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10608.834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10608contigS-firma_F_contig10608:4128..4960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionPutative LRR domain-encoding regions on the opposite strand of gene Ec-25_000790.1
Ec32 orthologEc-25_000790.7
Hectar predicted targeting categoryother localisation
Exons3
Model size219
Cds size219
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10608.834.1prot_S-firma_F_contig10608.834.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10608 4128..4960 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815599.7364862-CDS-S-firma_F_contig10608:4127..42001622815599.7364862-CDS-S-firma_F_contig10608:4127..4200Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10608 4128..4200 +
1696949444.5392606-CDS-S-firma_F_contig10608:4127..42001696949444.5392606-CDS-S-firma_F_contig10608:4127..4200Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10608 4128..4200 +
1622815599.748349-CDS-S-firma_F_contig10608:4632..47041622815599.748349-CDS-S-firma_F_contig10608:4632..4704Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10608 4633..4704 +
1696949444.5579853-CDS-S-firma_F_contig10608:4632..47041696949444.5579853-CDS-S-firma_F_contig10608:4632..4704Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10608 4633..4704 +
1622815599.7615933-CDS-S-firma_F_contig10608:4886..49601622815599.7615933-CDS-S-firma_F_contig10608:4886..4960Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10608 4887..4960 +
1696949444.5683434-CDS-S-firma_F_contig10608:4886..49601696949444.5683434-CDS-S-firma_F_contig10608:4886..4960Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10608 4887..4960 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10608.834.1

>prot_S-firma_F_contig10608.834.1 ID=prot_S-firma_F_contig10608.834.1|Name=mRNA_S-firma_F_contig10608.834.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=73bp
GPIPKELGALRRLEKLWLNSNNLTGNIPPELGKLTALTTLSLWSNQLTGT
IPEELGKLTALKKLYLSRNNLSG
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mRNA from alignment at S-firma_F_contig10608:4128..4960+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10608.834.1 ID=mRNA_S-firma_F_contig10608.834.1|Name=mRNA_S-firma_F_contig10608.834.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=833bp|location=Sequence derived from alignment at S-firma_F_contig10608:4128..4960+ (Sphaerotrichia firma ET2_F female)
GGACCCATCCCCAAGGAGCTAGGAGCACTTCGCAGGCTGGAGAAGCTTTG
GCTCAACAGCAACAACCTCACAGGTGAGACAATCGAAGAAGAGTTGAACT
TTTTCTTGTTCACGAAACAGAATCCTGCTGACGCGTGGGCGGGACCGATG
TTCTGGAAGTTCATAAGTCGAAAGAACAAATGTTTTTTTAATCTACTCAA
CTCACCCTCTAGCCTGTTGATGCTGAGGTCGAGGGACTTGAGGGCGCCAA
GATCTCCTAGCTGCCGCGGGATGTGGCCTGTAAATGAACGAGTCAAAGCA
GTCAGTTTAACGGGATAAAAGCAAAAGATACCTCCCGCTTTCTAGAAGAT
CCGTCCCTCCAACTAAAGAAAAATCCCCGCGCTTTCCGTACAAAAGTTTC
GTGGACGCGTACGCGTACGCGTCCATGGATCTACGGAGATCCATACAAGC
CAGCGGGCGATTATATTTCTAATCCCCCGTGTTCGGACAACTTTTCTGCC
TGCAGGCAACATCCCGCCGGAGCTGGGAAAGCTCACGGCACTGACGACAT
TGAGCCTTTGGAGCAACCAGCTGACTGGTGAGCTATTTCGCAAGTTTCCG
GATGAATCCCATGTATGCGCCTCTCTATTTTCAAGATCACTGATCTCCGT
AGATCTATGGACGCGTACGCGTGGGTGAGTAGGTGTTCTAGAAGCGGGGC
AATCATGTTTTTTCCCCCCCATAATTTCTGTGACATGCATTTGTTCGCCA
TGTGCACAGGAACGATACCAGAGGAGCTGGGGAAGCTGACTGCACTGAAG
AAGCTTTATCTGAGCCGCAACAACCTTTCAGGC
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Coding sequence (CDS) from alignment at S-firma_F_contig10608:4128..4960+

>mRNA_S-firma_F_contig10608.834.1 ID=mRNA_S-firma_F_contig10608.834.1|Name=mRNA_S-firma_F_contig10608.834.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=438bp|location=Sequence derived from alignment at S-firma_F_contig10608:4128..4960+ (Sphaerotrichia firma ET2_F female)
GGACCCATCCCCAAGGAGCTAGGAGCACTTCGCAGGCTGGAGAAGCTTTG
GCTCAACAGCAACAACCTCACAGGGACCCATCCCCAAGGAGCTAGGAGCA
CTTCGCAGGCTGGAGAAGCTTTGGCTCAACAGCAACAACCTCACAGGCAA
CATCCCGCCGGAGCTGGGAAAGCTCACGGCACTGACGACATTGAGCCTTT
GGAGCAACCAGCTGACTGGCAACATCCCGCCGGAGCTGGGAAAGCTCACG
GCACTGACGACATTGAGCCTTTGGAGCAACCAGCTGACTGGAACGATACC
AGAGGAGCTGGGGAAGCTGACTGCACTGAAGAAGCTTTATCTGAGCCGCA
ACAACCTTTCAGGCGAACGATACCAGAGGAGCTGGGGAAGCTGACTGCAC
TGAAGAAGCTTTATCTGAGCCGCAACAACCTTTCAGGC
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