mRNA_S-firma_F_contig106.814.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig106.814.1
Unique NamemRNA_S-firma_F_contig106.814.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig106.814.1 vs. uniprot
Match: D8LBC1_ECTSI (Uncharacterized protein n=3 Tax=Eukaryota TaxID=2759 RepID=D8LBC1_ECTSI)

HSP 1 Score: 377 bits (967), Expect = 6.430e-128
Identity = 191/194 (98.45%), Postives = 194/194 (100.00%), Query Frame = 1 
Query:   52 MPKVGIHRNYRKTFKTPRRPYEKERLDSELKLCGEYGLRCKREIWRVQFALAKIRKAARQLLTLDTKDPKRLFEGPALLRRMARFGLLGEDERELDFVLQLTTEKMLERRLQTKVFKQGLAKSIHHARVLIKHRHIRVGKQLVNVPQFMVRMDSEKHIDFSITSPYGQGRPGRVARKRAASKAAAGGDDGDESD 633
            MPKVGIHRNYRKTFKTPRRPYEKERLDSELKLCGEYGLRCKREIWRVQFALAKIRKAARQLLTLDTKDPKRLFEGPALLRRM+RFGLLGEDE+ELDFVLQLTTEKMLERRLQTKVFKQGLAKSIHHARVLIKHRHIRVGKQLVNVPQFMVRMDSEKHIDFSITSPYGQGRPGRVARKRAASKAAAGGDDG+ESD
Sbjct:    1 MPKVGIHRNYRKTFKTPRRPYEKERLDSELKLCGEYGLRCKREIWRVQFALAKIRKAARQLLTLDTKDPKRLFEGPALLRRMSRFGLLGEDEKELDFVLQLTTEKMLERRLQTKVFKQGLAKSIHHARVLIKHRHIRVGKQLVNVPQFMVRMDSEKHIDFSITSPYGQGRPGRVARKRAASKAAAGGDDGEESD 194
[Close]
BLAST of mRNA_S-firma_F_contig106.814.1 vs. uniprot
Match: A0A836CIZ7_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIZ7_9STRA)

HSP 1 Score: 328 bits (842), Expect = 5.450e-109
Identity = 162/192 (84.38%), Postives = 182/192 (94.79%), Query Frame = 1 
Query:   52 MPKVGIHRNYRKTFKTPRRPYEKERLDSELKLCGEYGLRCKREIWRVQFALAKIRKAARQLLTLDTKDPKRLFEGPALLRRMARFGLLGEDERELDFVLQLTTEKMLERRLQTKVFKQGLAKSIHHARVLIKHRHIRVGKQLVNVPQFMVRMDSEKHIDFSITSPYGQGRPGRVARKRAASKAAAGGDDGDE 627
            MPK+G++RNYRKT+KTPRRP+EKERLD ELKLCGEYGLRCKREIWRVQ+ALAKIRKAAR+LLTLD KDPKRLFEGPALLRRMARFGLL E+E+ELDFVLQL+T+K+LERRLQTKVFKQGLAKSIHHARVLI+ RHIRVGKQLVN+P F VR+DSEKHIDF++TSP+GQGRPGRVARKRAASKAA G  + D+
Sbjct:    1 MPKIGMYRNYRKTYKTPRRPFEKERLDQELKLCGEYGLRCKREIWRVQYALAKIRKAARELLTLDAKDPKRLFEGPALLRRMARFGLLTEEEKELDFVLQLSTQKLLERRLQTKVFKQGLAKSIHHARVLIRQRHIRVGKQLVNIPSFTVRVDSEKHIDFALTSPFGQGRPGRVARKRAASKAAGGAAEEDD 192
[Close]
BLAST of mRNA_S-firma_F_contig106.814.1 vs. uniprot
Match: A0A7S2V9P4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V9P4_9STRA)

HSP 1 Score: 326 bits (835), Expect = 6.480e-108
Identity = 164/191 (85.86%), Postives = 178/191 (93.19%), Query Frame = 1 
Query:   52 MPKVGIHRNYRKTFKTPRRPYEKERLDSELKLCGEYGLRCKREIWRVQFALAKIRKAARQLLTLDTKDPKRLFEGPALLRRMARFGLLGEDERELDFVLQLTTEKMLERRLQTKVFKQGLAKSIHHARVLIKHRHIRVGKQLVNVPQFMVRMDSEKHIDFSITSPYGQGRPGRVARKRAASKAAAGGDDGD 624
            MPK+   RN+RKT KTPRRPYEKERLD ELKLCGEYGLRCKREIWRVQ ALAKIRKAAR+LLTL+ KDP+RLFEGPALLRRM+R+GLL +DE+ELDFVLQL+T+K+LERRLQTKVFKQGLAKSIHHARVLIK RHIRVGKQLVNVP F+VRMDSEKHIDF+ITSPYG GRPGRVARKRAA KAAAGGDD D
Sbjct:    1 MPKISARRNHRKTSKTPRRPYEKERLDQELKLCGEYGLRCKREIWRVQLALAKIRKAARELLTLEPKDPRRLFEGPALLRRMSRYGLLMDDEKELDFVLQLSTQKLLERRLQTKVFKQGLAKSIHHARVLIKQRHIRVGKQLVNVPSFLVRMDSEKHIDFAITSPYGLGRPGRVARKRAAQKAAAGGDDED 191
[Close]
BLAST of mRNA_S-firma_F_contig106.814.1 vs. uniprot
Match: A0A7S0TCI6_9STRA (Hypothetical protein n=2 Tax=Pelagophyceae TaxID=35675 RepID=A0A7S0TCI6_9STRA)

HSP 1 Score: 318 bits (816), Expect = 5.210e-105
Identity = 164/196 (83.67%), Postives = 179/196 (91.33%), Query Frame = 1 
Query:   52 MPKVGIHRNYRKTFKTPRRPYEKERLDSELKLCGEYGLRCKREIWRVQFALAKIRKAARQLLTLDTKDPKRLFEGPALLRRMARFGLLGEDERELDFVLQLTTEKMLERRLQTKVFKQGLAKSIHHARVLIKHRHIRVGKQLVNVPQFMVRMDSEKHIDFSITSPYGQGRPGRVARKRAASKAAA--GGDDGDESD 633
            MPKV   RNY KT KTPRRP+EKER+D ELKLCGEYGLRCKRE+WRVQFALAKIRKAAR+LLTLD KDPKRLFEG ALLRRMAR+GLL E E +LD +LQ+TT+K+LERRLQTKVFKQGLAKSIHHARVLIK RHIRVGKQ+VNVP FMVR+DSEKHIDF+ITSPYGQGRPGRVARKRAA+KAAA  GGD G+ESD
Sbjct:    1 MPKVRFLRNYSKTSKTPRRPFEKERIDGELKLCGEYGLRCKRELWRVQFALAKIRKAARELLTLDPKDPKRLFEGAALLRRMARYGLLDETELDLDAILQMTTQKLLERRLQTKVFKQGLAKSIHHARVLIKQRHIRVGKQVVNVPSFMVRVDSEKHIDFAITSPYGQGRPGRVARKRAAAKAAADGGGDAGEESD 196
[Close]
BLAST of mRNA_S-firma_F_contig106.814.1 vs. uniprot
Match: A0A7S2BVT2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BVT2_9STRA)

HSP 1 Score: 305 bits (780), Expect = 1.350e-99
Identity = 158/196 (80.61%), Postives = 171/196 (87.24%), Query Frame = 1 
Query:   52 MPKVGIHRNYRKTFKTPRRPYEKERLDSELKLCGEYGLRCKREIWRVQFALAKIRKAARQLLTLDTKDPKRLFEGPALLRRMARFGLLGEDERELDFVLQLTTEKMLERRLQTKVFKQGLAKSIHHARVLIKHRHIRVGKQLVNVPQFMVRMDSEKHIDFSITSPYGQ-GRPGRVARKRAASKAAAGGDDGDESDE 636
            MP +   RNY  T KTPRR YEKERLD ELKLCGEYGLRCKREIWRVQ ALAKIRKAAR LLTLD KDPKRLFEGPALLR+M R+GLL E+E+ELDFVLQLTT+K+LERRLQTKVFKQGLAKSIHHARVLIK RHIRVGKQLVNVP F+VR+DSEKHI F+ TSPY   GR GRVARKRAA+KAA  GD+G+E DE
Sbjct:    1 MPSIAFKRNYSSTSKTPRRAYEKERLDQELKLCGEYGLRCKREIWRVQLALAKIRKAARDLLTLDVKDPKRLFEGPALLRKMVRYGLLSEEEKELDFVLQLTTQKLLERRLQTKVFKQGLAKSIHHARVLIKQRHIRVGKQLVNVPSFLVRVDSEKHIQFATTSPYSDVGRQGRVARKRAAAKAA--GDEGEEDDE 194
[Close]
BLAST of mRNA_S-firma_F_contig106.814.1 vs. uniprot
Match: A0A3R6WW56_9STRA (Ribosomal_S4 domain-containing protein n=6 Tax=Saprolegniaceae TaxID=4764 RepID=A0A3R6WW56_9STRA)

HSP 1 Score: 304 bits (779), Expect = 2.050e-99
Identity = 148/183 (80.87%), Postives = 167/183 (91.26%), Query Frame = 1 
Query:   52 MPKVGIHRNYRKTFKTPRRPYEKERLDSELKLCGEYGLRCKREIWRVQFALAKIRKAARQLLTLDTKDPKRLFEGPALLRRMARFGLLGEDERELDFVLQLTTEKMLERRLQTKVFKQGLAKSIHHARVLIKHRHIRVGKQLVNVPQFMVRMDSEKHIDFSITSPYGQGRPGRVARKRAASKA 600
            MPK+  HRNYRKT++TP R +EKERLD E+KL GEYGLRCKREIWRVQ+ LAK+RKAARQLLTLD KDPKRLFEGPAL+RR+ R+GLL +DE ELDFVLQ+ T+K+LERRLQTKVFKQGLAKSIHHAR LIK RHIRVG+QLV+VP FMVR+DSEKHIDFS+TSPYGQGRPGRVARKRAA +A
Sbjct:    1 MPKISRHRNYRKTYRTPSRAFEKERLDQEMKLLGEYGLRCKREIWRVQYTLAKLRKAARQLLTLDPKDPKRLFEGPALMRRLKRYGLLADDENELDFVLQMNTQKLLERRLQTKVFKQGLAKSIHHARTLIKQRHIRVGRQLVDVPSFMVRLDSEKHIDFSVTSPYGQGRPGRVARKRAAQRA 183
[Close]
BLAST of mRNA_S-firma_F_contig106.814.1 vs. uniprot
Match: A0A7S1BHT3_9STRA (Hypothetical protein n=5 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S1BHT3_9STRA)

HSP 1 Score: 304 bits (778), Expect = 2.440e-99
Identity = 154/189 (81.48%), Postives = 170/189 (89.95%), Query Frame = 1 
Query:   52 MPKVGIHRNYRKTFKTPRRPYEKERLDSELKLCGEYGLRCKREIWRVQFALAKIRKAARQLLTLDTKDPKRLFEGPALLRRMARFGLLGEDERELDFVLQLTTEKMLERRLQTKVFKQGLAKSIHHARVLIKHRHIRVGKQLVNVPQFMVRMDSEKHIDFSITSPYGQGRPGRVARKRAASKAAAGGDD 618
            MP   +HRNYRKT KTPRRPYEKERLD+ELKL GEYGLRCKRE+WRVQFALAK+RKAAR LLTLD KDPKR+FEG ALLRRM+R+GLL EDE ELDFVLQL+T+K+LERRLQTKVFKQGLAKSIHHARVLI+ RHIRVG QLVNVP F VR  SEKH+DF+  SPYGQG PGRVARKRAA++AAAGGD+
Sbjct:    1 MPTNAMHRNYRKTSKTPRRPYEKERLDAELKLVGEYGLRCKREVWRVQFALAKLRKAARTLLTLDPKDPKRVFEGEALLRRMSRYGLLNEDELELDFVLQLSTQKILERRLQTKVFKQGLAKSIHHARVLIRQRHIRVGGQLVNVPSFNVRTSSEKHMDFATNSPYGQGPPGRVARKRAAARAAAGGDE 189
[Close]
BLAST of mRNA_S-firma_F_contig106.814.1 vs. uniprot
Match: A0A3R7JV42_9STRA (Ribosomal_S4 domain-containing protein n=4 Tax=Peronosporaceae TaxID=4777 RepID=A0A3R7JV42_9STRA)

HSP 1 Score: 305 bits (780), Expect = 2.510e-99
Identity = 151/187 (80.75%), Postives = 170/187 (90.91%), Query Frame = 1 
Query:   52 MPKVGIHRNYRKTFKTPRRPYEKERLDSELKLCGEYGLRCKREIWRVQFALAKIRKAARQLLTLDTKDPKRLFEGPALLRRMARFGLLGEDERELDFVLQLTTEKMLERRLQTKVFKQGLAKSIHHARVLIKHRHIRVGKQLVNVPQFMVRMDSEKHIDFSITSPYGQGRPGRVARKRAASKAAAGG 612
            MPK+  HRNYRKT++TP R +EKERLD ELKL GEYGLRCKREIWRVQ+AL+K+RKAAR+LLTLD KDPKRLFEG ALLRR+ RFG+L EDE ELDFVL+L  +K+LERRLQTKVFKQ LAKSIHHARVLIK RHIRVGKQLV+VP F+VRMDSEKHIDF++TSPYGQGRPGRVAR+RAA +AAAGG
Sbjct:    1 MPKISRHRNYRKTYRTPSRAFEKERLDQELKLLGEYGLRCKREIWRVQYALSKLRKAARELLTLDPKDPKRLFEGSALLRRLKRFGVLSEDENELDFVLRLNVQKLLERRLQTKVFKQNLAKSIHHARVLIKQRHIRVGKQLVDVPSFLVRMDSEKHIDFAVTSPYGQGRPGRVARRRAAQRAAAGG 187
[Close]
BLAST of mRNA_S-firma_F_contig106.814.1 vs. uniprot
Match: K0SZN6_THAOC (Uncharacterized protein n=8 Tax=Bacillariophyta TaxID=2836 RepID=K0SZN6_THAOC)

HSP 1 Score: 301 bits (770), Expect = 3.810e-98
Identity = 154/189 (81.48%), Postives = 167/189 (88.36%), Query Frame = 1 
Query:   52 MPKVGIHRNYRKTFKTPRRPYEKERLDSELKLCGEYGLRCKREIWRVQFALAKIRKAARQLLTLDTKDPKRLFEGPALLRRMARFGLLGEDERELDFVLQLTTEKMLERRLQTKVFKQGLAKSIHHARVLIKHRHIRVGKQLVNVPQFMVRMDSEKHIDFSITSPYGQGRPGRVARKRAASKAAAGGDD 618
            MP    HRNYRKT+KTPRRPYEKERLD+ELKL GEYGLRCKREIWRVQ+ALAK+RKAAR LLTLD KDPKR+FEG ALLRRM+R+GLL +DE ELDFVLQLTT+K+LERRLQTKVFKQGLAKSIHHARVLI+ RHI VG QLVNVP F VR  SEKHID S  SPYGQG PGRVA+KRAA+KAAAG DD
Sbjct:    1 MPTNAQHRNYRKTYKTPRRPYEKERLDAELKLVGEYGLRCKREIWRVQYALAKLRKAARVLLTLDPKDPKRIFEGAALLRRMSRYGLLADDELELDFVLQLTTQKLLERRLQTKVFKQGLAKSIHHARVLIRQRHISVGGQLVNVPSFNVRTSSEKHIDISANSPYGQGAPGRVAKKRAAAKAAAGEDD 189
[Close]
BLAST of mRNA_S-firma_F_contig106.814.1 vs. uniprot
Match: B8C1H2_THAPS (RS9, ribosomal protein 9 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1H2_THAPS)

HSP 1 Score: 300 bits (769), Expect = 5.400e-98
Identity = 154/189 (81.48%), Postives = 166/189 (87.83%), Query Frame = 1 
Query:   52 MPKVGIHRNYRKTFKTPRRPYEKERLDSELKLCGEYGLRCKREIWRVQFALAKIRKAARQLLTLDTKDPKRLFEGPALLRRMARFGLLGEDERELDFVLQLTTEKMLERRLQTKVFKQGLAKSIHHARVLIKHRHIRVGKQLVNVPQFMVRMDSEKHIDFSITSPYGQGRPGRVARKRAASKAAAGGDD 618
            MP    HRNYRKT+KTPRRPYEKERLD+ELKL GEYGLRCKREIWR Q+ALAK+RKAAR LLTLD KDPKR+FEG ALLRRM+R+GLL EDE ELDFVLQLTT+K+LERRLQTKVFKQGLAKSIHHARVLI+ RHI VG QLVNVP F VR  SEKHID S  SPYGQG PGRVA+KRAA+KAAAG DD
Sbjct:    1 MPTNAQHRNYRKTYKTPRRPYEKERLDAELKLVGEYGLRCKREIWRCQYALAKLRKAARTLLTLDPKDPKRIFEGTALLRRMSRYGLLAEDELELDFVLQLTTQKLLERRLQTKVFKQGLAKSIHHARVLIRQRHISVGGQLVNVPSFNVRTSSEKHIDISADSPYGQGAPGRVAKKRAAAKAAAGDDD 189
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig106.814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBC1_ECTSI6.430e-12898.45Uncharacterized protein n=3 Tax=Eukaryota TaxID=27... [more]
A0A836CIZ7_9STRA5.450e-10984.38Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A7S2V9P4_9STRA6.480e-10885.86Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0TCI6_9STRA5.210e-10583.67Hypothetical protein n=2 Tax=Pelagophyceae TaxID=3... [more]
A0A7S2BVT2_9STRA1.350e-9980.61Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A3R6WW56_9STRA2.050e-9980.87Ribosomal_S4 domain-containing protein n=6 Tax=Sap... [more]
A0A7S1BHT3_9STRA2.440e-9981.48Hypothetical protein n=5 Tax=Bacillariophyta TaxID... [more]
A0A3R7JV42_9STRA2.510e-9980.75Ribosomal_S4 domain-containing protein n=4 Tax=Per... [more]
K0SZN6_THAOC3.810e-9881.48Uncharacterized protein n=8 Tax=Bacillariophyta Ta... [more]
B8C1H2_THAPS5.400e-9881.48RS9, ribosomal protein 9 n=1 Tax=Thalassiosira pse... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig106contigS-firma_F_contig106:3174..7584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LBC1
Preferred nameRPS9
PFAMsRibosomal_S4,S4
Max annot lvl2759|Eukaryota
KEGG koko:K02997,ko:K17675
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005911,GO:0006417,GO:0006450,GO:0008150,GO:0009506,GO:0009507,GO:0009536,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0016020,GO:0019222,GO:0019843,GO:0022626,GO:0022627,GO:0030054,GO:0030312,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0042788,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0055044,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0071944,GO:0080090,GO:0097159,GO:0098588,GO:0098805,GO:1901363,GO:1990904,GO:2000112
Evalue1.36e-132
EggNOG OGsCOG0522@1|root,KOG3301@2759|Eukaryota
EC3.6.4.13
Descriptionpositive regulation of translational fidelity
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein S4/S9, eukaryotic/archaeal
Ec32 orthologEc-27_004470.1
Exons5
Model size1331
Cds size588
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815597.1802166-UTR-S-firma_F_contig106:3173..32241622815597.1802166-UTR-S-firma_F_contig106:3173..3224Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig106 3174..3224 +
1696949442.5479066-UTR-S-firma_F_contig106:3173..32241696949442.5479066-UTR-S-firma_F_contig106:3173..3224Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig106 3174..3224 +
1622815597.246766-UTR-S-firma_F_contig106:6892..75841622815597.246766-UTR-S-firma_F_contig106:6892..7584Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig106 6893..7584 +
1696949442.6406069-UTR-S-firma_F_contig106:6892..75841696949442.6406069-UTR-S-firma_F_contig106:6892..7584Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig106 6893..7584 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815597.1908264-CDS-S-firma_F_contig106:3224..32521622815597.1908264-CDS-S-firma_F_contig106:3224..3252Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig106 3225..3252 +
1696949442.5605922-CDS-S-firma_F_contig106:3224..32521696949442.5605922-CDS-S-firma_F_contig106:3224..3252Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig106 3225..3252 +
1622815597.2000287-CDS-S-firma_F_contig106:4385..45251622815597.2000287-CDS-S-firma_F_contig106:4385..4525Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig106 4386..4525 +
1696949442.5700839-CDS-S-firma_F_contig106:4385..45251696949442.5700839-CDS-S-firma_F_contig106:4385..4525Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig106 4386..4525 +
1622815597.2128623-CDS-S-firma_F_contig106:5414..55881622815597.2128623-CDS-S-firma_F_contig106:5414..5588Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig106 5415..5588 +
1696949442.6064212-CDS-S-firma_F_contig106:5414..55881696949442.6064212-CDS-S-firma_F_contig106:5414..5588Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig106 5415..5588 +
1622815597.2228322-CDS-S-firma_F_contig106:6327..63951622815597.2228322-CDS-S-firma_F_contig106:6327..6395Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig106 6328..6395 +
1696949442.6162-CDS-S-firma_F_contig106:6327..63951696949442.6162-CDS-S-firma_F_contig106:6327..6395Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig106 6328..6395 +
1622815597.2356777-CDS-S-firma_F_contig106:6714..68921622815597.2356777-CDS-S-firma_F_contig106:6714..6892Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig106 6715..6892 +
1696949442.6278627-CDS-S-firma_F_contig106:6714..68921696949442.6278627-CDS-S-firma_F_contig106:6714..6892Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig106 6715..6892 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig106.814.1prot_S-firma_F_contig106.814.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig106 3225..6892 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig106.814.1

>prot_S-firma_F_contig106.814.1 ID=prot_S-firma_F_contig106.814.1|Name=mRNA_S-firma_F_contig106.814.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=196bp
MPKVGIHRNYRKTFKTPRRPYEKERLDSELKLCGEYGLRCKREIWRVQFA
LAKIRKAARQLLTLDTKDPKRLFEGPALLRRMARFGLLGEDERELDFVLQ
LTTEKMLERRLQTKVFKQGLAKSIHHARVLIKHRHIRVGKQLVNVPQFMV
RMDSEKHIDFSITSPYGQGRPGRVARKRAASKAAAGGDDGDESDE*
back to top

mRNA from alignment at S-firma_F_contig106:3174..7584+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig106.814.1 ID=mRNA_S-firma_F_contig106.814.1|Name=mRNA_S-firma_F_contig106.814.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4411bp|location=Sequence derived from alignment at S-firma_F_contig106:3174..7584+ (Sphaerotrichia firma ET2_F female)
CCTCTCTCCCCTCCTCCCTTTACTCTCTGGTTGCCTAAGCCAACTAGAAC
CATGCCGAAGGTCGGCATACACCGGAACTGTGAGTTGAACGCCAGGGTGT
GTTGGTTTTGGGGCCGGCTCGAGCTTTGCGGATGCCAGAAAATCGTTTAG
TGTCTGTGTGTGAGCTCGTTTCTTGGCCAAGGAAAGAGAGGCCTTGTTTG
GCGCCAGAGCCAGCCTTTGGCACCCGGGAGCATGGTGTGATTCGGTACCA
TGCATGGGAAGGGGATTCGCAGAAACCCTGGCATGGAGATATCGGTTTGC
TTTGCAAGTTTGTTGGGTGCTATCGCACAGATCGGATTTGATAGTATTCG
GCCATCTCCTGCACACCCCGCTCGCCTCTTGTGAGCTCGCTCGGCTCCCA
GCCGTCGTGTGTTGTATGGAGGTCATGTTGATGGAAACGTCCACAGGCTT
GTGGACTTGCGAGGAGAGCAAGAAGTGCTAGCATGACCAAAACTGATTTG
TGTCAGCTTGTTCGTTGCACCTCTGTCACGTGTTTGAGTGTGTTTGAACG
CTTGTGGTTTGCTCACACACCCTCACGACTGCCGAAAAGCGGTGTTTGGG
TGGGTTGGCAACCCTCCTTGTTTACCTTATACCCCGTATGATACATACGA
GTACGAAGTCCACATCCGCAAGCGGTGCTGTTTTTGAAATGTTAGTGGTG
GTTGCTCCATCCCTTGGAAGATCGGACGTTACCCACTTTCGCACAAATGG
CACGTGCGTGGTGCCCACTCTTTGTGTATTGCTCGGATCATTTCTCTTGG
AAAGCTCTTGGCTTCGTTGTGCTTCGACGTGCGACGCTACACTGCTGTAC
TTACCCCCGCCGAGTTGCGGGAACAGCAGGTTGCTCAGTTGATACAACCG
TGGAAGCAAGCAGGATAACACGTGGTACATACATTTTTCGAAGGTATCAA
TGGCAGCACGTTGTGTGTGGATTTATCGCTGCTGTGCTGCTGTAATACTG
CACGGGCCAAACCTCCCTCTTGCCAGGTTTGTTTCCCTCGAACTTTAGTC
TGCAGCGCGAAAGGGCCGAACTTATCCCACCGTTTGATGGCAGTTGATCG
AATACACTTTCCAATCTATCCATGAACAATCCGTCGCTCATTCGTTGTTC
TTCCTTCCGCGTCCCCTCCAACCGTCCCCGACGATCGCCGTTGTTGTTGT
TGTTGCGAGCAGACCGGAAGACCTTCAAGACTCCCAGGCGGCCGTATGAG
AAGGAACGCCTCGACTCGGAGCTCAAGCTCTGCGGAGAGTACGGCCTCCG
ATGCAAGCGCGAGATCTGGCGTGTCCAGTTCGCGTTGGCCAAGATCCGCA
AGGTGGGTGGTGCGGCTGTGGGGGGTGTGCTGGAGGAAGGGAGGGAGGGG
TGTGGGATGACGCTTGTGTTTGCGTGTCATGAAACCAACTCTGCGTGCAG
CAGTTGTGTGTCTTGTCGCTGTGTTTTGTCTGCTGGATGCGCGCATCCAT
TCGCGGTGGTTACAGCTGCGTGTTAGGTAACGTGCATGCTTCTCTTACCT
GGGCAACATATTTACTAACTTGCCGCAAGAGCGCTTTAGGTTGTATCCGG
CTTTGTACAACGTTGACCGCATCATTCGCTGGCTCTTGTACTGCATTTTT
TCTTTTCGGGCGAAGCTGGTACGCCAATACGCGGCCTCGCATGTAAGAGC
GCCCTACGTCGAGGGCAACGGCCACCCGAACGGCACACTCGTATGACGGA
TGGTGGAAAACTGATGGTACAGCAGTTTTAGGCCAAACCGAAGATTTCAT
CCCGCGGAAAGATCGTTCCGCGAGTACAAGTATTCGACTTCGGTTTTTGT
CGGTCCCTGGTTATGACCGGCCTAGCGATCTCTTTGATCGGTCTCGGGGA
TAACGTCAATGCGTACTAGTTGGGCACCATTTGTCAACTCAGGATAACGC
TCAAAGCTTGGGCCGTTGCTTTGCCTTGCGTTTACTTTAAAGCAAGGCCC
GGCGGTGCGGTAGTAAAGCGCAACGCCGCCCGTCTACACTGATTACCCTG
CACCGTTCGTTCACACTGTTTCCCACACCGCAAACCGGCCGGTACGCCTG
CCACAGGCTCGTTCACAACCAAGCAATACATCCTTGTCGTTCCCCCCCAC
CGCCGCCCTTCCTTCCCGCTCCTTCGCGTCATTGGCTACCGCCCAACGCG
TAACCATGTCTCGTCTTTCCCGCTCATCCTGTCCGCCGCAGGCTGCCCGC
CAGCTGCTGACTCTGGACACCAAGGACCCCAAGCGCCTGTTCGAGGGCCC
CGCTCTGCTGCGCCGCATGGCCCGCTTCGGGCTCCTCGGCGAGGACGAGA
GGGAGCTCGACTTCGTGCTCCAGCTCACCACCGAGAAGATGCTCGAGCGC
AGGCTCCAGACCAAGGTGTGACAACGCTGCTTGATTTTCCTAGTTGTTTG
TGTGTGTGTGTGTGCTTTCGTTTGTAAGCTGCTGCGCGTCGAGAAGCTAG
AGCGTTTTAAGCCACCGTTGGTGGTGTTTTAGGTCTTGGCCATTGAGCAT
GGGTTTGTGGTTATGAGTGGCGGATGAGGCGTGCTGATGTTTGTGCGGGG
GGGATCCCATGTCCTGTTGTTGACAGTCGGGCGAAACTCTGTCATATCAC
CCCGTCGTTTGGTTTTACCTGTGAGGAGAAATTTCAGTGGGCGTGATATG
TGGTATCTTTGCCTTTTGAATACTCGAGCATGGCTGCATCTCGGGTAAAC
CCGTGGTGCTGTGCACGCTTTTGCTGACATTCTAAATACACTGGGGGTCC
GCATGTCTCCAGACGGTTATTTGCAGCGTGTTTGTCGTACCGGCCAGCAC
GTGAAGTGTCCCTTGGCTTGGAGGGGATTTATTGTTTGTCAGCGTCGTTT
GCGAAGTGTGCAGCCGGCCGTTTGTTACACCAAAGAAGGATTTTGCAAGT
CCCGAAAGTCTTTGATTGTGGGCTGTGCAGAAGGAGTTGTTTCTGTCTCG
GTTTAGCCACGCAATCCGGCAGATAAAGCACGTCACTGGTTTGTCTCGGG
GCGAGAGGTACGGCAGCATACCTGTGTTGTACCAGCCAGCTGCCTGTGTT
CTCACTCGTTCCTGGTGCCCCCGGTGTACCAATGCGTTTTTCGCGAATCC
TCAGGTCTTCAAGCAAGGCCTTGCGAAATCTATCCATCACGCACGCGTGC
TTATCAAGCACCGTCACATCCGGTAAGTTCCGTTGTGGCATGCGCTCCTC
TTGGGAAAAGTGTCATCTTGTGAATGTAGGTGGGTCGTGAAGTGTTTATA
TTGGCGTTGAGCCCACCTGCTGCTGAAGACGCTGACAAAGGTGAAGCATC
ATTTCCTTTGCGTACATACAAGTAGTAGTGATTCAACTCTCTGGCGTTTG
CTCTATTATATTCGGGCCGTGATGATGCCCTCCATTCGTCTACCCTGCAG
TACGCACGCTTTCGAAGCAACGCGTCACAAGACCCCCCCTCCCCCACCCC
TTTCCCCCTCCGTCGTCGTCGATGTTTGTCGCTTTCAACAGCGTGGGCAA
GCAGCTTGTGAATGTGCCTCAGTTCATGGTCCGCATGGACTCCGAGAAGC
ACATCGACTTCTCGATTACCTCGCCTTACGGCCAGGGCCGACCCGGACGC
GTCGCCCGTAAGCGCGCCGCCAGCAAGGCCGCCGCCGGCGGTGACGACGG
CGACGAGTCGGACGAGTAGACGTCCGCTCCAGCAGTCGTGCGTTGCGCTC
GCAGTGAGCTAGGCAGAAGGGATTGTCCATCCGCCCGATCGATCCCTCCC
AGCTTTTTTGCCGGCGATTGGGTCGGGTGCGAAGGGGACATGAGGAGAAC
GCATGAATAGACCGCAGCTGACTGCCTTTTTTGGCCTCTTCTCTCTCTCC
ATGGCGCGATGATAATTCGTACCTGTAGGGGGAGGGGGGGGCTGGTGCCG
GGAGCTGAAGCGTTCTGGGAGGGCCACTTCGGTTTTTCGGTTTCGGGGCG
GGATTTTGCTGGGTTGTATTTTACTCTCAGTCTCTTGTAGCTGCTGCTGC
TTTTTTCTGCGAGGTGCATACGTTCGATCACCTTGGTCGCTTGGGTTGTC
ACCCGTTGTGTGAGGCGATTTGGAGACCATCTCACCAACGGGTTGAAAAA
TGAAACAGGGAATCAGAGGGCCCTAAATTATTCAGCGAAAACCTACGTTG
TGTATCTTTTTGCACGATTTGTGCCGTGTTGAGCGGTCATAGCCACTCAC
CGAGGCGAGAGCATGCAGTATGCGAAAGTCCCTCTTCCTCTCTTTCCTTA
CCATCATGTTCGCCCCGTTGCTGCACTTTGACGGCACATATGTACAGTGT
TCATGTGGTGTGCTCTTTTCAATCATTTGAGCCGGCGACGTTTGCCATGA
GTATTTTTCCA
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig106:3174..7584+

>mRNA_S-firma_F_contig106.814.1 ID=mRNA_S-firma_F_contig106.814.1|Name=mRNA_S-firma_F_contig106.814.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1176bp|location=Sequence derived from alignment at S-firma_F_contig106:3174..7584+ (Sphaerotrichia firma ET2_F female)
ATGCCGAAGGTCGGCATACACCGGAACTATGCCGAAGGTCGGCATACACC
GGAACTACCGGAAGACCTTCAAGACTCCCAGGCGGCCGTATGAGAAGGAA
CGCCTCGACTCGGAGCTCAAGCTCTGCGGAGAGTACGGCCTCCGATGCAA
GCGCGAGATCTGGCGTGTCCAGTTCGCGTTGGCCAAGATCCGCAAGACCG
GAAGACCTTCAAGACTCCCAGGCGGCCGTATGAGAAGGAACGCCTCGACT
CGGAGCTCAAGCTCTGCGGAGAGTACGGCCTCCGATGCAAGCGCGAGATC
TGGCGTGTCCAGTTCGCGTTGGCCAAGATCCGCAAGGCTGCCCGCCAGCT
GCTGACTCTGGACACCAAGGACCCCAAGCGCCTGTTCGAGGGCCCCGCTC
TGCTGCGCCGCATGGCCCGCTTCGGGCTCCTCGGCGAGGACGAGAGGGAG
CTCGACTTCGTGCTCCAGCTCACCACCGAGAAGATGCTCGAGCGCAGGCT
CCAGACCAAGGCTGCCCGCCAGCTGCTGACTCTGGACACCAAGGACCCCA
AGCGCCTGTTCGAGGGCCCCGCTCTGCTGCGCCGCATGGCCCGCTTCGGG
CTCCTCGGCGAGGACGAGAGGGAGCTCGACTTCGTGCTCCAGCTCACCAC
CGAGAAGATGCTCGAGCGCAGGCTCCAGACCAAGGTCTTCAAGCAAGGCC
TTGCGAAATCTATCCATCACGCACGCGTGCTTATCAAGCACCGTCACATC
CGGTCTTCAAGCAAGGCCTTGCGAAATCTATCCATCACGCACGCGTGCTT
ATCAAGCACCGTCACATCCGCGTGGGCAAGCAGCTTGTGAATGTGCCTCA
GTTCATGGTCCGCATGGACTCCGAGAAGCACATCGACTTCTCGATTACCT
CGCCTTACGGCCAGGGCCGACCCGGACGCGTCGCCCGTAAGCGCGCCGCC
AGCAAGGCCGCCGCCGGCGGTGACGACGGCGACGAGTCGGACGAGTAGCG
TGGGCAAGCAGCTTGTGAATGTGCCTCAGTTCATGGTCCGCATGGACTCC
GAGAAGCACATCGACTTCTCGATTACCTCGCCTTACGGCCAGGGCCGACC
CGGACGCGTCGCCCGTAAGCGCGCCGCCAGCAAGGCCGCCGCCGGCGGTG
ACGACGGCGACGAGTCGGACGAGTAG
back to top