mRNA_S-firma_F_contig106.820.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig106.820.1
Unique NamemRNA_S-firma_F_contig106.820.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig106.820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig106contigS-firma_F_contig106:43098..43723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size628
Cds size333
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815596.9901812-UTR-S-firma_F_contig106:43097..433901622815596.9901812-UTR-S-firma_F_contig106:43097..43390Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig106 43098..43390 +
1696949442.4576216-UTR-S-firma_F_contig106:43097..433901696949442.4576216-UTR-S-firma_F_contig106:43097..43390Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig106 43098..43390 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815597.0030556-CDS-S-firma_F_contig106:43390..437231622815597.0030556-CDS-S-firma_F_contig106:43390..43723Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig106 43391..43723 +
1696949442.4664488-CDS-S-firma_F_contig106:43390..437231696949442.4664488-CDS-S-firma_F_contig106:43390..43723Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig106 43391..43723 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig106.820.1prot_S-firma_F_contig106.820.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig106 43391..43723 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig106.820.1

>prot_S-firma_F_contig106.820.1 ID=prot_S-firma_F_contig106.820.1|Name=mRNA_S-firma_F_contig106.820.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=111bp
MDVSKLRIRQGLSRTKMVPSFQTSSLIWVFPGSMLRGRISAPMSISRSVA
EEHGENSTANARSYPRATRTTSCAGGFHSKTQNPQCCIFSNMFSTFFIAC
ASRLNSGARTS
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mRNA from alignment at S-firma_F_contig106:43098..43723+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig106.820.1 ID=mRNA_S-firma_F_contig106.820.1|Name=mRNA_S-firma_F_contig106.820.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=626bp|location=Sequence derived from alignment at S-firma_F_contig106:43098..43723+ (Sphaerotrichia firma ET2_F female)
CTTCTTGTTAGAGTTCCAGTGGTGGAGAGTTGCTGTTTCAAAATCGCCAT
CTTCAGTAGTAAAAGCTCCCACGCACGCCGCACTGGCCTCGATCGATTCC
TTCGAGGACACATGATCATGACACCATCTTCCGCCTCGTGGCTTGTTCGA
TCCAAGGATCCGGGACCACAACGACAAAATCGATCATTCTCGGCTAACTT
CTGTGGATCACCTCAAAACACACGCTTCACCCTCGACTGCGTGATTCATA
TAACCAAGCGGGGGGTCCACCACCGTCCCACAAAGAACGGCGAATGGATG
TGAGCAAACTTCGAATACGGCAAGGACTATCGCGTACGAAAATGGTGCCA
TCATTCCAGACATCGTCGTTAATTTGGGTGTTTCCAGGATCAATGCTCCG
CGGCCGAATTTCGGCGCCAATGTCTATTTCTAGGTCGGTTGCGGAGGAGC
ATGGAGAAAACTCCACTGCCAACGCAAGATCGTACCCGCGGGCCACCCGC
ACAACTTCTTGCGCGGGTGGGTTCCATTCCAAAACTCAAAACCCGCAATG
CTGTATCTTCTCAAATATGTTTTCTACGTTCTTCATCGCATGCGCTTCCC
GCCTCAATTCGGGGGCTAGGACCTCA
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Coding sequence (CDS) from alignment at S-firma_F_contig106:43098..43723+

>mRNA_S-firma_F_contig106.820.1 ID=mRNA_S-firma_F_contig106.820.1|Name=mRNA_S-firma_F_contig106.820.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=666bp|location=Sequence derived from alignment at S-firma_F_contig106:43098..43723+ (Sphaerotrichia firma ET2_F female)
ATGGATGTGAGCAAACTTCGAATACGGCAAGGACTATCGCGTACGAAAAT
GGTGCCATCATTCCAGACATCGTCGTTAATTTGGGTGTTTCCAGGATCAA
TGCTCCGCGGCCGAATTTCGGCGCCAATGTCTATTTCTAGGTCGGTTGCG
GAGGAGCATGGAGAAAACTCCACTGCCAACGCAAGATCGTACCCGCGGGC
CACCCGCACAACTTCTTGCGCGGGTGGGTTCCATTCCAAAACTCAAAACC
CGCAATGCTGTATCTTCTCAAATATGTTTTCTACGTTCTTCATCGCATGC
GCTTCCCGCCTCAATTCGGGGGCTAGGACCTCAATGGATGTGAGCAAACT
TCGAATACGGCAAGGACTATCGCGTACGAAAATGGTGCCATCATTCCAGA
CATCGTCGTTAATTTGGGTGTTTCCAGGATCAATGCTCCGCGGCCGAATT
TCGGCGCCAATGTCTATTTCTAGGTCGGTTGCGGAGGAGCATGGAGAAAA
CTCCACTGCCAACGCAAGATCGTACCCGCGGGCCACCCGCACAACTTCTT
GCGCGGGTGGGTTCCATTCCAAAACTCAAAACCCGCAATGCTGTATCTTC
TCAAATATGTTTTCTACGTTCTTCATCGCATGCGCTTCCCGCCTCAATTC
GGGGGCTAGGACCTCA
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