mRNA_S-firma_F_contig10566.776.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10566.776.1
Unique NamemRNA_S-firma_F_contig10566.776.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10566.776.1 vs. uniprot
Match: D7G5T6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5T6_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 1.030e-56
Identity = 99/129 (76.74%), Postives = 110/129 (85.27%), Query Frame = 1 
Query:    1 MAAPRRRSGYKYAEAASASTSFRRHPHPDMQHPPDGYSLIEADLHRATTSLEVASFPFLSQLKLRSAINLSAEAIHDQAIQFFLDSGVALLNPLALEAFDGPYDLWEEAAKESLELLLDADNHPMILLD 387
            MA  RRRSGYKYAEAA+     RRHP  ++QHPPDGY LIEADLHRATTSLEVASFPFL+QLKLRSAINLSAE +HD+   FFL  GV +L+P +LE+FDGPYDLWEEAAKESLELLLDA NHPMIL+D
Sbjct:    1 MAVSRRRSGYKYAEAATV----RRHP--EIQHPPDGYCLIEADLHRATTSLEVASFPFLAQLKLRSAINLSAEPLHDKVNGFFLAEGVNMLHPQSLESFDGPYDLWEEAAKESLELLLDAGNHPMILID 123
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BLAST of mRNA_S-firma_F_contig10566.776.1 vs. uniprot
Match: A0A2P6MVI2_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MVI2_9EUKA)

HSP 1 Score: 63.2 bits (152), Expect = 2.200e-9
Identity = 37/107 (34.58%), Postives = 64/107 (59.81%), Query Frame = 1 
Query:   94 HPPDGYSLIEADLHRATTSLEVASFPFLSQLKLRSAINLSAEAIHDQAIQFFLDSGVALLNPLALEAFDGPYDLW----EEAAKESLELLLDADNHPMILLDRYINN 402
            +PP+ Y ++E  ++R+  SL   +FPF+ QL L++ + LS E        FF ++ + L++ L L+ +  P + W    EE  KE+LE+LL+ DNHP++L+   + N
Sbjct:   10 YPPETYGIVEKHIYRSN-SLNPLNFPFIKQLGLKTILQLSPEVPTRAVSTFFQENDINLIH-LGLKVWK-PDESWRPVTEELIKEALEILLNKDNHPIMLMCARLQN 113
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BLAST of mRNA_S-firma_F_contig10566.776.1 vs. uniprot
Match: A0A433QAD1_9FUNG (Protein-tyrosine phosphatase n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QAD1_9FUNG)

HSP 1 Score: 60.1 bits (144), Expect = 1.320e-8
Identity = 32/96 (33.33%), Postives = 58/96 (60.42%), Query Frame = 1 
Query:   97 PPDGYSLIEADLHRATTSLEVASFPFLSQLKLRSAINLSAEAIHDQAIQFFLDSGVALLNPLALEAFDGPYDLWEEAAKESLELLLDADNHPMILL 384
            PP  Y +IE DL+R+    E+ +FPFL +L L++ + L+ E  + + + F  D  + L +   + + +    + EEA  E+LE++L+ DN+PMI++
Sbjct:    8 PPLNYGMIEEDLYRSGQPNEL-NFPFLEKLGLKTVVWLAPEEPNQRFLDFIYDQDIQLNHLGVISSLNAWDPITEEAVLEALEIILNPDNYPMIIM 102
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BLAST of mRNA_S-firma_F_contig10566.776.1 vs. uniprot
Match: A0A388JWL6_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JWL6_CHABU)

HSP 1 Score: 58.2 bits (139), Expect = 3.050e-7
Identity = 32/99 (32.32%), Postives = 62/99 (62.63%), Query Frame = 1 
Query:  100 PDGYSLIEADLHRATTSLEVASFPFLSQLKLRSAINLSAEAIHDQAIQFFLDSGVALLNPLALEAFDGPYDLW----EEAAKESLELLLDADNHPMILL 384
            P+ Y ++E +++R+     + +FPF+ +L L++ + LS EA      QF  ++G   ++ L L+A+  PY  W    EE  KE+LE++LD+++HP++++
Sbjct:   19 PEFYGIVEPNVYRSNALYSI-NFPFVKRLNLKTVLYLSPEAPIRAVTQFLEETGTKFIH-LGLKAWK-PYVTWKPISEELIKEALEIVLDSNSHPVMIM 114
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BLAST of mRNA_S-firma_F_contig10566.776.1 vs. uniprot
Match: A0A507D6X6_9FUNG (Tyrosine-protein phosphatase domain-containing protein n=2 Tax=Synchytrium TaxID=286114 RepID=A0A507D6X6_9FUNG)

HSP 1 Score: 55.5 bits (132), Expect = 7.550e-7
Identity = 36/97 (37.11%), Postives = 57/97 (58.76%), Query Frame = 1 
Query:   97 PPDGYSLIEADLHRATTSLEVASFPFLSQLKLRSAINLSAEAIHDQAIQFFLDSGVALLNPLALEAFDGPYD-LWEEAAKESLELLLDADNHPMILL 384
            PP  + +IE DL+R+    E+ +FPFL +L LR+ + L+ E    + + F LD     L+ L L      +D + EE   ESLEL+LD +N+PM+++
Sbjct:   10 PPLNFGMIEEDLYRSGQPNEL-NFPFLEKLGLRTVVFLAQEEPAPRFLNF-LDDQEITLHHLGLNTSANAWDPISEEIVLESLELILDPNNYPMMVM 104
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BLAST of mRNA_S-firma_F_contig10566.776.1 vs. uniprot
Match: A0A1Y2CS44_9FUNG (Putative tyrosine phosphatase family protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2CS44_9FUNG)

HSP 1 Score: 55.1 bits (131), Expect = 9.910e-7
Identity = 32/97 (32.99%), Postives = 56/97 (57.73%), Query Frame = 1 
Query:   97 PPDGYSLIEADLHRATTSLEVASFPFLSQLKLRSAINLSAEAIHDQAIQFFLDSGVALLNPLALEAFDGPYD-LWEEAAKESLELLLDADNHPMILL 384
            PP  +  +E DL+R+    E+ +FPFL +L L++ + L+ E  + + + F  D  +A  +   L A    +D + EE   ESLEL+LD  N+P++++
Sbjct:    7 PPINFGCVEVDLYRSGQPNEL-NFPFLERLNLKTVVFLAPEEPNQRFLNFIDDQEIAFHHLGLLNASANAWDPISEEVVLESLELILDPKNYPLMVM 102
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BLAST of mRNA_S-firma_F_contig10566.776.1 vs. uniprot
Match: A0A261XTR4_9FUNG (GrpE protein homolog, mitochondrial n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261XTR4_9FUNG)

HSP 1 Score: 55.8 bits (133), Expect = 2.200e-6
Identity = 37/103 (35.92%), Postives = 59/103 (57.28%), Query Frame = 1 
Query:   97 PPDGYSLIEADLHRATTSLEVASFPFLSQLKLRSAINLSAEAIHDQAIQFFLDSGVALLNPLALEAF---DGPYDLW----EEAAKESLELLLDADNHPMILL 384
            PP+ Y ++EA + R+   L+ A  PF+ QLKL++ + LS E      + +  ++GV L++ L L  +   + P   W    EE  KE LE++LD D HPM+L+
Sbjct:  710 PPEQYGIVEAGVFRSDM-LQSAHLPFIRQLKLKTILVLSPELPGRAVLNYLEEAGVNLVH-LGLTTWKPANTPLS-WRPVSEELIKEGLEMVLDVDRHPMLLM 809
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BLAST of mRNA_S-firma_F_contig10566.776.1 vs. uniprot
Match: A0A507EP31_9FUNG (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A507EP31_9FUNG)

HSP 1 Score: 51.6 bits (122), Expect = 3.480e-5
Identity = 31/99 (31.31%), Postives = 57/99 (57.58%), Query Frame = 1 
Query:   97 PPDGYSLIEADLHRATTSLEVASFPFLSQLKLRSAINLSAEAIHDQAIQFFLDSGVALLNPLALEAFD---GPYDLWEEAAKESLELLLDADNHPMILL 384
            PPD + ++E  ++R++T L   +F ++  L LRS + L+ +        F+ D G  L++ L L+ +    G   + EE  KE LEL+L+ +NHP++++
Sbjct:    7 PPDAFGIVERGVYRSST-LHPTNFSYIRTLGLRSVVVLTPDVPSKGVQAFYEDCGARLIH-LGLQTWRPNLGWRPVSEELIKEGLELVLNVNNHPVMVM 103
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BLAST of mRNA_S-firma_F_contig10566.776.1 vs. uniprot
Match: A0A4P9ZWD8_9FUNG (Protein-tyrosine phosphatase n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4P9ZWD8_9FUNG)

HSP 1 Score: 51.2 bits (121), Expect = 3.920e-5
Identity = 33/99 (33.33%), Postives = 55/99 (55.56%), Query Frame = 1 
Query:   97 PPDGYSLIEADLHRATTSLEVASFPFLSQLKLRSAINLSAEAIHDQAIQFFLDSGVALLNPLALEAFD---GPYDLWEEAAKESLELLLDADNHPMILL 384
            PPD +  +E  ++R++ ++    +PFL  L+L   + LS E +  +AIQ F       L  L L+A+    G   + EE  KE LEL+L+ +N P++L+
Sbjct:    6 PPDAFGTVEEGIYRSSDAITSDHYPFLRNLRLCHIVFLSTE-VPSRAIQKFAAEEKINLIHLGLKAWQANLGWKPVSEELVKEGLELILNRNNIPVLLM 103
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BLAST of mRNA_S-firma_F_contig10566.776.1 vs. uniprot
Match: A0A1S8VZT0_9FUNG (Uncharacterized protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VZT0_9FUNG)

HSP 1 Score: 50.4 bits (119), Expect = 8.850e-5
Identity = 30/99 (30.30%), Postives = 56/99 (56.57%), Query Frame = 1 
Query:  100 PDGYSLIEADLHRATTSLEVASFPFLSQLKLRSAINLSAEAIHDQAIQFFLDSGVALLNPLALEAFDGPYDLW----EEAAKESLELLLDADNHPMILL 384
            PD Y ++E +++RA+T L+ AS+P    +K  + ++LS EA     + +  ++ + L++    +        W    EE  KE LEL+L+AD HP++++
Sbjct:    8 PDVYGIVEKNVYRAST-LQPASYPLFKHIK--TILSLSPEAPTKSILSWMEENRITLVHLGYQQLVKPNTSSWRPVSEELVKEGLELILNADKHPLLVM 103
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10566.776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7G5T6_ECTSI1.030e-5676.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2P6MVI2_9EUKA2.200e-934.58Uncharacterized protein (Fragment) n=1 Tax=Planopr... [more]
A0A433QAD1_9FUNG1.320e-833.33Protein-tyrosine phosphatase n=1 Tax=Jimgerdemanni... [more]
A0A388JWL6_CHABU3.050e-732.32Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A507D6X6_9FUNG7.550e-737.11Tyrosine-protein phosphatase domain-containing pro... [more]
A0A1Y2CS44_9FUNG9.910e-732.99Putative tyrosine phosphatase family protein n=1 T... [more]
A0A261XTR4_9FUNG2.200e-635.92GrpE protein homolog, mitochondrial n=1 Tax=Bifigu... [more]
A0A507EP31_9FUNG3.480e-531.31Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
A0A4P9ZWD8_9FUNG3.920e-533.33Protein-tyrosine phosphatase n=1 Tax=Dimargaris cr... [more]
A0A1S8VZT0_9FUNG8.850e-530.30Uncharacterized protein n=1 Tax=Batrachochytrium s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10566contigS-firma_F_contig10566:284..2337 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7G5T6
PFAMsY_phosphatase2
Max annot lvl2759|Eukaryota
KEGG koko:K18043,ko:K18045
Evalue1.68e-57
EggNOG OGsCOG2365@1|root,KOG1572@2759|Eukaryota
EC3.1.3.48
Descriptionprotein tyrosine phosphatase activity
COG categoryT
BRITEko00000,ko01000,ko01009
Hectar predicted targeting categoryother localisation
Exons3
Model size405
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10566.776.1prot_S-firma_F_contig10566.776.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10566 284..2337 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815592.7302778-CDS-S-firma_F_contig10566:283..4181622815592.7302778-CDS-S-firma_F_contig10566:283..418Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10566 284..418 -
1696949439.8221273-CDS-S-firma_F_contig10566:283..4181696949439.8221273-CDS-S-firma_F_contig10566:283..418Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10566 284..418 -
1622815592.7409537-CDS-S-firma_F_contig10566:1421..15351622815592.7409537-CDS-S-firma_F_contig10566:1421..1535Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10566 1422..1535 -
1696949439.8364496-CDS-S-firma_F_contig10566:1421..15351696949439.8364496-CDS-S-firma_F_contig10566:1421..1535Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10566 1422..1535 -
1622815592.7514765-CDS-S-firma_F_contig10566:2181..23371622815592.7514765-CDS-S-firma_F_contig10566:2181..2337Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10566 2182..2337 -
1696949439.8461118-CDS-S-firma_F_contig10566:2181..23371696949439.8461118-CDS-S-firma_F_contig10566:2181..2337Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10566 2182..2337 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10566.776.1

>prot_S-firma_F_contig10566.776.1 ID=prot_S-firma_F_contig10566.776.1|Name=mRNA_S-firma_F_contig10566.776.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=135bp
MAAPRRRSGYKYAEAASASTSFRRHPHPDMQHPPDGYSLIEADLHRATTS
LEVASFPFLSQLKLRSAINLSAEAIHDQAIQFFLDSGVALLNPLALEAFD
GPYDLWEEAAKESLELLLDADNHPMILLDRYINN*
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mRNA from alignment at S-firma_F_contig10566:284..2337-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10566.776.1 ID=mRNA_S-firma_F_contig10566.776.1|Name=mRNA_S-firma_F_contig10566.776.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2054bp|location=Sequence derived from alignment at S-firma_F_contig10566:284..2337- (Sphaerotrichia firma ET2_F female)
ATGGCAGCTCCTCGCCGACGGTCAGGCTACAAGTATGCCGAGGCGGCGTC
GGCGTCCACGTCGTTTCGGAGACACCCGCACCCGGACATGCAGCATCCGC
CAGACGGCTACTCCCTGATAGAGGCCGACCTTCATAGGGCGACAACATCC
TTGGAGGTACAGTACAGAGTTTGCACAGCAGACGGTAGAACTGCTGTAGG
TGATGGGTGATGAGGTGCTGACTGCTGTGTGGTTTGAAAGATTCGTGGCT
AGTGCTGCGTGCTTCTCGGCTTGTGATTGAATCCCAACCTCCCAACCCGA
GTTTTGAGGCTAACAGATCTCCACCCAGTGTGTGGTAGATCCAGACCTTC
CGATCTTGGTGGTTGCTGTTCTGCACAGCCCCCCCGCTCTCTCTGGCTAC
TAATAGCTTGCCTCCCACATGTTGTTACGTGCCGAGCATACCAATGGTGT
GTGAGGTGTCTAGTATGTCACATTTCAGAGGTTTGCCATGATGTATGGTA
CCATAAGCGGCAGACAGACGCGGAGGATTGTTCATTTTGAAAAGATGAAT
CGGAGGTTTCGTGGTGCTAGACAAGACGAACACATGTATGTACAACACTC
TCCCAGCCACCCAAAGCGTCTCAACACATCATCCGCTTATAGGCTTCAAG
ACCAAAGTACTACAACTGAAAGATCGCCCCTGGTTCAGAACAGAGCCTGC
CACTACGTACCAATTTGTTTTTGTCTCTCGTTCAATCCTCCCACCCCCTG
CTGTGCTACTCTGTGCACCCTTCTTTGCTCACTCCGTCTCCAACCTCCAC
AGGTGGCAAGTTTTCCTTTCCTGTCCCAGCTCAAGCTTCGGTCGGCGATT
AACCTGTCAGCGGAAGCGATCCACGACCAGGCTATACAGTTTTTCCTCGA
CTCGGGAGTTGCCTTGGTGAGCTAGCCAGCCTCAATAGGAAAATTGAAAG
CGCTTGCGTTAGTAAATACTTCAACTTTATTGTTGAGACGAGGGTGGGGG
CCAGTGGGGCAGACGACAGAAACATCAATGGGAGAAGAAAAAAAAGAAAA
AAATAGCGGCAGTCTAGAATCTAGGCCACGTCCCCCGCGGGGACACATGA
AGTAACACCAGTGTGATAGTATAGTAGCTGCACGCTCTGGCTGCTTGGAG
CAGCGATCACAAGGAATGCGCCGTCAGCCGGATTAGACTGGCGTTGGACA
GGCAGCGACGGTGCTGGATAAGAGATAAGAGTCGCCAGCTGTGGCCAAGT
CGACCATGCCGAGAGTGCAGCGGTTTCGTCTTCAATCCGTCGGTCTGGCT
CCCCCGCGCGTATAAGCAAAGCGAAGCCTCTGCTGATGACCGTGGATGTG
TTGCCGTAGTTGACCCAACTACCGGCTAAACAACCTGGCTGCTGTGGCCA
TTCAAAACGCACCCCGAGAACATGGCATTTTTTAGTTGGCGTGGGCAGCG
GGTACCCACCGACGCTAGCGGGCAGAGGGATGCAGTTGCAACATGACTGA
CCTACACATTGCGTTGGATTTCGACCATGGCGACGGACCATCGCGACGAG
TTAGCCTTGCGCCAGCGCATCAGGCTTGCATGTTCTCATCCATCCCTGTG
TGATGCGACCGACCCCTCCCCGCATCGTGCATCAATCTCATCGCATCTCT
CGCATCCCAGCTGAACCCGCTAGCTTTGGAGGCTTTCGCATGTTTTCATG
CATCCCCGTGTGATTCGACCTACCTCTCCCCGCATCGTGTATTAATCTCA
TCGCATCTCTCGTATCCCAGCTGAATCCGCTAGCTTTGGAGGCTTTCGCA
TGCTTTTTTGCATCCCTGTGTGATTTTGAGCCTTGCGCATGTTTTCATGC
ATCCCTGCATGATGAGACCTACCTCTCCCCGCATCGTGTATCAATCTCAT
CGCATCTCTCGTATCCCAGCTGAACCCGCTAGCGTTGGAGGCTTTCGACG
GACCGTATGACCTGTGGGAGGAGGCGGCCAAGGAGTCGCTAGAGCTCTTG
CTGGACGCCGACAATCACCCGATGATACTTCTCGACAGGTACATCAACAA
TTAA
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Coding sequence (CDS) from alignment at S-firma_F_contig10566:284..2337-

>mRNA_S-firma_F_contig10566.776.1 ID=mRNA_S-firma_F_contig10566.776.1|Name=mRNA_S-firma_F_contig10566.776.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=810bp|location=Sequence derived from alignment at S-firma_F_contig10566:284..2337- (Sphaerotrichia firma ET2_F female)
ATGGCAGCTCCTCGCCGACGGTCAGGCTACAAGTATGCCGAGGCGGCGTC
GGCGTCCACGTCGTTTCGGAGACACCCGCACCCGGACATGCAGCATCCGC
CAGACGGCTACTCCCTGATAGAGGCCGACCTTCATAGGGCGACAACATCC
TTGGAGATGGCAGCTCCTCGCCGACGGTCAGGCTACAAGTATGCCGAGGC
GGCGTCGGCGTCCACGTCGTTTCGGAGACACCCGCACCCGGACATGCAGC
ATCCGCCAGACGGCTACTCCCTGATAGAGGCCGACCTTCATAGGGCGACA
ACATCCTTGGAGGTGGCAAGTTTTCCTTTCCTGTCCCAGCTCAAGCTTCG
GTCGGCGATTAACCTGTCAGCGGAAGCGATCCACGACCAGGCTATACAGT
TTTTCCTCGACTCGGGAGTTGCCTTGGTGGCAAGTTTTCCTTTCCTGTCC
CAGCTCAAGCTTCGGTCGGCGATTAACCTGTCAGCGGAAGCGATCCACGA
CCAGGCTATACAGTTTTTCCTCGACTCGGGAGTTGCCTTGCTGAACCCGC
TAGCGTTGGAGGCTTTCGACGGACCGTATGACCTGTGGGAGGAGGCGGCC
AAGGAGTCGCTAGAGCTCTTGCTGGACGCCGACAATCACCCGATGATACT
TCTCGACAGGTACATCAACAATTAACTGAACCCGCTAGCGTTGGAGGCTT
TCGACGGACCGTATGACCTGTGGGAGGAGGCGGCCAAGGAGTCGCTAGAG
CTCTTGCTGGACGCCGACAATCACCCGATGATACTTCTCGACAGGTACAT
CAACAATTAA
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