mRNA_S-firma_F_contig10016.77.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10016.77.1
Unique NamemRNA_S-firma_F_contig10016.77.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10016.77.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10016contigS-firma_F_contig10016:3224..3787 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size316
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815525.3601396-CDS-S-firma_F_contig10016:3223..32911622815525.3601396-CDS-S-firma_F_contig10016:3223..3291Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10016 3224..3291 -
1696949388.039304-CDS-S-firma_F_contig10016:3223..32911696949388.039304-CDS-S-firma_F_contig10016:3223..3291Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10016 3224..3291 -
1622815525.3750935-CDS-S-firma_F_contig10016:3540..37871622815525.3750935-CDS-S-firma_F_contig10016:3540..3787Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10016 3541..3787 -
1696949388.0530772-CDS-S-firma_F_contig10016:3540..37871696949388.0530772-CDS-S-firma_F_contig10016:3540..3787Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10016 3541..3787 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10016.77.1prot_S-firma_F_contig10016.77.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10016 3224..3787 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10016.77.1

>prot_S-firma_F_contig10016.77.1 ID=prot_S-firma_F_contig10016.77.1|Name=mRNA_S-firma_F_contig10016.77.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=105bp
STANERRRHSSWVSRENLPSGCSRGCRTASASCAATRSATRCCSCSAIRT
MATAPRARGREATPGARENVGLRLVSTRPSDEAHEGTGTQRAQGEAPPVV
GEEW*
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mRNA from alignment at S-firma_F_contig10016:3224..3787-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10016.77.1 ID=mRNA_S-firma_F_contig10016.77.1|Name=mRNA_S-firma_F_contig10016.77.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=564bp|location=Sequence derived from alignment at S-firma_F_contig10016:3224..3787- (Sphaerotrichia firma ET2_F female)
TCAACAGCCAATGAAAGGCGCCGACACAGCAGTTGGGTCTCCCGCGAGAA
CCTCCCTTCTGGTTGCTCACGCGGTTGCCGTACGGCCTCGGCCTCCTGCG
CGGCGACACGCTCCGCCACCCGCTGCTGCTCGTGTTCGGCAATCCGCACC
ATGGCGACGGCTCCGAGAGCGAGAGGACGCGAAGCAACCCCCGGAGCTAG
GGAAAACGTGGGGCTTCGACTCGTCTCGACACGACCCAGCGACGAGGGTG
AGCATGGCGTACTATTTGCTGTCGTTCTTGCACTTGCATGCATCCGCCCG
TTCCCTCGTGGCAGAGAACGAACGTTTCCGCCCTTTCAGTCCACGACGTT
TCGCTTGCTGGCGAGACTGTCAATTTGCCGGAGGACGGTGTCAAGCCCTT
GTCCTATTTGCGTCAGCTGTTGTTGATGTTCTCCCCCTCCCGCGCCTCCC
GAATCTCTCATTGTTGCGCACGTGTGTGTGTGATTTCACCCGGCAGCCCA
CGAAGGGACCGGCACCCAACGAGCGCAAGGAGAAGCCCCGCCGGTCGTGG
GGGAGGAGTGGTGA
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Coding sequence (CDS) from alignment at S-firma_F_contig10016:3224..3787-

>mRNA_S-firma_F_contig10016.77.1 ID=mRNA_S-firma_F_contig10016.77.1|Name=mRNA_S-firma_F_contig10016.77.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=630bp|location=Sequence derived from alignment at S-firma_F_contig10016:3224..3787- (Sphaerotrichia firma ET2_F female)
TCAACAGCCAATGAAAGGCGCCGACACAGCAGTTGGGTCTCCCGCGAGAA
CCTCCCTTCTGGTTGCTCACGCGGTTGCCGTACGGCCTCGGCCTCCTGCG
CGGCGACACGCTCCGCCACCCGCTGCTGCTCGTGTTCGGCAATCCGCACC
ATGGCGACGGCTCCGAGAGCGAGAGGACGCGAAGCAACCCCCGGAGCTAG
GGAAAACGTGGGGCTTCGACTCGTCTCGACACGACCCAGCGACGAGGTCA
ACAGCCAATGAAAGGCGCCGACACAGCAGTTGGGTCTCCCGCGAGAACCT
CCCTTCTGGTTGCTCACGCGGTTGCCGTACGGCCTCGGCCTCCTGCGCGG
CGACACGCTCCGCCACCCGCTGCTGCTCGTGTTCGGCAATCCGCACCATG
GCGACGGCTCCGAGAGCGAGAGGACGCGAAGCAACCCCCGGAGCTAGGGA
AAACGTGGGGCTTCGACTCGTCTCGACACGACCCAGCGACGAGGCCCACG
AAGGGACCGGCACCCAACGAGCGCAAGGAGAAGCCCCGCCGGTCGTGGGG
GAGGAGTGGTGACCCACGAAGGGACCGGCACCCAACGAGCGCAAGGAGAA
GCCCCGCCGGTCGTGGGGGAGGAGTGGTGA
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