mRNA_S-firma_F_contig1055.760.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1055.760.1
Unique NamemRNA_S-firma_F_contig1055.760.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1055.760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1055contigS-firma_F_contig1055:5042..8783 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWW domain
Ec32 orthologEc-12_001670.1
Exons3
Model size2239
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1055.760.1prot_S-firma_F_contig1055.760.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1055 6809..7548 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.8623226-UTR-S-firma_F_contig1055:5041..56331622815590.8623226-UTR-S-firma_F_contig1055:5041..5633Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1055 5042..5633 +
1696949438.5903726-UTR-S-firma_F_contig1055:5041..56331696949438.5903726-UTR-S-firma_F_contig1055:5041..5633Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1055 5042..5633 +
1622815590.8744066-UTR-S-firma_F_contig1055:6789..68081622815590.8744066-UTR-S-firma_F_contig1055:6789..6808Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1055 6790..6808 +
1696949438.602444-UTR-S-firma_F_contig1055:6789..68081696949438.602444-UTR-S-firma_F_contig1055:6789..6808Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1055 6790..6808 +
1622815590.9190931-UTR-S-firma_F_contig1055:7548..87831622815590.9190931-UTR-S-firma_F_contig1055:7548..8783Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1055 7549..8783 +
1696949438.6318028-UTR-S-firma_F_contig1055:7548..87831696949438.6318028-UTR-S-firma_F_contig1055:7548..8783Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1055 7549..8783 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.8892941-CDS-S-firma_F_contig1055:6808..68701622815590.8892941-CDS-S-firma_F_contig1055:6808..6870Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1055 6809..6870 +
1696949438.6119695-CDS-S-firma_F_contig1055:6808..68701696949438.6119695-CDS-S-firma_F_contig1055:6808..6870Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1055 6809..6870 +
1622815590.9041536-CDS-S-firma_F_contig1055:7217..75481622815590.9041536-CDS-S-firma_F_contig1055:7217..7548Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1055 7218..7548 +
1696949438.6209257-CDS-S-firma_F_contig1055:7217..75481696949438.6209257-CDS-S-firma_F_contig1055:7217..7548Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1055 7218..7548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1055.760.1

>prot_S-firma_F_contig1055.760.1 ID=prot_S-firma_F_contig1055.760.1|Name=mRNA_S-firma_F_contig1055.760.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=131bp
MNNYDATMWHQGVDEYGRQFWVNNHTGQATYHLHGGVGGPPSPQYPMAYQ
APSQMGMPPAGMMAGPSFQPVREGIYDSKMNPGFATDSSERRRSYLGAAQ
TVGISLLLAAGKVRSTKSNRSKVLGFPYRR*
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mRNA from alignment at S-firma_F_contig1055:5042..8783+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1055.760.1 ID=mRNA_S-firma_F_contig1055.760.1|Name=mRNA_S-firma_F_contig1055.760.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3742bp|location=Sequence derived from alignment at S-firma_F_contig1055:5042..8783+ (Sphaerotrichia firma ET2_F female)
GCAAAGGTTGGGCGTAGGTAGTTTTGTGCAATGTAGTCAAGACGTCCTCT
GGCGTTGCCTCGATGATGCGGATGGTCTGCTGTACAGGGATGGTACATGC
ATACGTCTCCGCATCTCCGCTCCCCGGAGCCCGGAGCCCGGAGGTAGGGG
GAGGCAGGCAGCAAATCCAAACTTCTTGTTCTGTTCGGCAGACCGTTTTG
GAACCCGTAAAACGTTCCTTGGACCGCTATGCATCAGGGGCACCGGTTCA
CGCAACAAGCGTCACTTAGACTCCGCAAGGCTAGCCCACACTTGCCACAC
CCACGCCCAGACCTCGCATTCACTGTTGCTTCTGATCACCAAGCCCACAC
CTCACATCTCTCTTTCCCCCCTCTCTCGAGCATCGACTACCTACCGTCGT
CTTCTCTTCCACCACCTCTAGCGACACCTCCGGTTGAGCTTGTTTGGACC
GGGTTGAACTCTGACAAAACTTCAGCAGCTTTCGTAACCTCTACAAAGAA
CCGTTCAAAGGCCCCATCCATCCCTGCCTTCGAATCGCGAGGAGGTCGAG
ACATCGAGGCGCGCACATTGTTCAACGAAGCTAGGCAGCGAGGTGAGACG
AGAGAGCGTCCCGCGTCAATGTAGGATAGCTCGCGCGCCGAGAACATGCG
CGGGCGGTAATTTCTTCTCTGGTTGGGAGAACACCGTATCTTTGCGCAAT
CGATGGCGCATGTCGTGTGTTGGGGTAGCGGTGCGTGGCGTACGAACGAA
CGTGCATACCCGCGAGTTTAAGCCCCGCTGCCGACGCCTACTTGCGGAGC
CACTGCTGGGGCTCTCGTTCTGTTTGCTGGCAATAGGCTTCCAAACGAGA
GTGTGCCCTACATAAACTGCGTCGAACAAATTATCACGGGTGCGTGCACG
CAACTATGTGGTGAAGATTTGGATTCTACTTCAACCTTGAGGGTCCGTCC
GTGCACATAGTCTTGGCTTGAAAGGCGATACCAGTGAAGGACATCGTATA
ATGTATGTGTGCTGTAGATGCGACTTGTGCGTTGGATCTGCTGTAGATGC
GACTTGTGTATTAGATCGCTCAGACCTGCCTCTAGAGTGGTGATGCTGAA
GGCCGCAGTAGTAGACAACGTGAAAAACACAAAAAAAATCTGGACCGAGA
GAAAACTCCGGTGATGGCGGGCTCGCCGCCACGGACCCCCAGATTGCGGA
CTTTTCTATCGTCTGCTGCGGCCTTCGGCATCTCCGCCCAAGCGGCTGAT
CTGAGCGAGCCAATGCACACATCGCATCTACTTGTAATAGCGTTTCCTCA
GCTTATTTTACAACGTTTCAAGTGGGGACTCCCAACCCTCACCTTGTTTG
ACCGTCCGTAGTGTTGCCTGTTTCGACTTAATTTTGTGTCGGGGGAAATA
TTGAATTTGACTTGTCATCAGTCTGTCTGCGGTTGGTTGGAAAATAGAGG
CTACGTGACTGTAAGCTAGGAAAGAACAGCTCGTCACCGCTCGGTGAGCA
AACAAATAGAGGTTTTCTTTGTTCAACGCTTGCTGAATGGTGGGATGGAT
CGGTTGACGGGCGTCTTTTCGTGCATGCCCTGAGGAGATTGGTGCCGTGA
AAACAGATACTCCGTAAGTACCGCGGTGTTTTTTTCCTTCGCGTGGTGCA
CAGACGAGAGTTGCGTTCGAGGTCATCTGAACTGAACTCGCATATGCTTG
CTTTTTGGCTGTGACACCACCCGGCGTTTTTCGCCGATTGGATCGCAGGA
AGAAGCAACAAGAAAGGATGAACAACTACGATGCGACGATGTGGCACCAG
GGAGTCGACGAGTACGGCCGCCAGTTCTGGTGAGTGGGGTTCCTCTTCAC
CCCTCTCACTTTCTACCGGTATCGTCGATGAAAAGGCGTAGCTCCGCAGT
CCTTTGAGTCGATGATAGAAAATGCTGCCATGCTATGAGTCGGCTGAAAG
ATGAAGGCAACCTACGCCGCGACGAACACACATTGGATGAAGTTCTCGTC
GTATGGTAAATCCTTTCGAGAAAGCTATGTACTGCTCCATCTGCGTCTGC
TCTCGAGACATCTGTGATCTGCTAGGTTGAGCCCTGCAGAGTGTATTTCT
GTGTTCCGGTGTGAGACGGCATGGACTAACCAAACGCTCTCCCGTCCCAC
GACCCTCGTTTTTCCATTCTGCGAAGGGTTAACAACCACACAGGTCAGGC
CACCTATCACCTTCACGGTGGTGTTGGAGGCCCTCCCAGCCCACAGTACC
CGATGGCTTACCAAGCACCATCTCAGATGGGAATGCCACCTGCCGGTATG
ATGGCCGGTCCGTCTTTCCAACCGGTGCGCGAAGGGATCTACGACAGCAA
AATGAACCCAGGTTTTGCCACCGACAGCTCGGAACGCAGGCGTTCGTACC
TGGGCGCTGCTCAAACAGTGGGAATCTCGCTTCTACTTGCTGCTGGTAAA
GTTCGGAGTACTAAGAGCAACCGCAGCAAGGTTCTGGGATTCCCGTACCG
GCGCTGAGTGGCTGCCAACAACGTTCCTCTTTCGTGGCGCGGGCTGAAAG
CTAACGCTAGGTCGTCTCGAAACCGCGCATAAGCACGACGAGCGTTCCTA
CGTCATTGTACCCCGCCTCGAAGGGTTCGGGGGGAACGGTTTCCTGCTGT
GTTTTCTCACCCGTGTGGTTCCCTTCGTCAGGTAGAAGTCGACCGACCAT
ATATGGAGGGTGGCGAACATGTTGTGAATACTGTAAATATTGTAAGTAAA
ATACGGTGCTCGTCGGTGGGTATGCGGCTCGAGCATGGCCTTCCTCTGGT
GGAACGGAGGGCCCTGTTCTGTGTAGTCTTTAATTTGTCCGCATTCTCGT
TAATTTAAGCACATGTCGGGTTTTTGCTTGCTTCGAAGGGCAGGCATGAT
TTAACTCGCGGTATGTGCTGTTGGAGGGATCGGTGATGCGAGCTCTAGAA
ATACCTATTCGGGTCGCTCTGAGGAAAGACAGAAGTGTAGATAGGCCCGG
GTATTATTACTAAGTTCAGGGGTGGGTGCGAGTATTCTATGTGTGGTATG
CAGTTCAAACAACCTCTTTATTTTTTGCATTAGTTTCACTCTGTTGCCGA
CTCACTTAAAAGTTTACTATTACAAGAGGTTGTTTGTTTCTCAAAAGTAT
CGAAATATTTATGGTTGGTTTCGCTGTTTCCTGCGTGCTTGTACGGCCAT
AAGGCAAAATGTCGATCTTTGAATAGGTAGAGTCATGCTGTTACTGTCTG
ATTTGGTGTTGCAATATGTTTAGTTTTCCAGCTGAATTGATATTACTCGT
ATGTATGTACATAAGTCGGTCTTGTTGTTCATATTTCAAACATTCTGACG
CGAGACGACCACAAGAGGCGACCGTAAGAGGCGACCATAAGAGGAAGTAG
TGGTAGCTAAATTCTGCAGGGGAAATGAGACTTTCGTCGGGGGAACGGCA
TGACTATGTGTACTCTCAGGCGCATGTATCGTCAAGAAGTGGGCCATGTC
TTTCAAGGATGATGGTGTCACGAGAAGGACCATGTGCTTCGTGCTTTGAC
GTCGTGAGTACAGTAGTAGGCGGACACACCGTCGTAGGAGGCGCTATCTG
ATGGCGTGTAAATATTCAGTGCATGTTTCCACGTGGGACGTACGATAGAG
ATGAGAAGGGCCATATGCTTCATGAATTGATGGTGTGAGTAGAGGGATAC
CACGCATGTGCGTTAAGTCGATTTTAAAAAAATGCTAACAAC
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Coding sequence (CDS) from alignment at S-firma_F_contig1055:5042..8783+

>mRNA_S-firma_F_contig1055.760.1 ID=mRNA_S-firma_F_contig1055.760.1|Name=mRNA_S-firma_F_contig1055.760.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=786bp|location=Sequence derived from alignment at S-firma_F_contig1055:5042..8783+ (Sphaerotrichia firma ET2_F female)
ATGAACAACTACGATGCGACGATGTGGCACCAGGGAGTCGACGAGTACGG
CCGCCAGTTCTGATGAACAACTACGATGCGACGATGTGGCACCAGGGAGT
CGACGAGTACGGCCGCCAGTTCTGGGTTAACAACCACACAGGTCAGGCCA
CCTATCACCTTCACGGTGGTGTTGGAGGCCCTCCCAGCCCACAGTACCCG
ATGGCTTACCAAGCACCATCTCAGATGGGAATGCCACCTGCCGGTATGAT
GGCCGGTCCGTCTTTCCAACCGGTGCGCGAAGGGATCTACGACAGCAAAA
TGAACCCAGGTTTTGCCACCGACAGCTCGGAACGCAGGCGTTCGTACCTG
GGCGCTGCTCAAACAGTGGGAATCTCGCTTCTACTTGCTGCTGGTAAAGT
TCGGAGTACTAAGAGCAACCGCAGCAAGGTTCTGGGATTCCCGTACCGGC
GCTGAGGTTAACAACCACACAGGTCAGGCCACCTATCACCTTCACGGTGG
TGTTGGAGGCCCTCCCAGCCCACAGTACCCGATGGCTTACCAAGCACCAT
CTCAGATGGGAATGCCACCTGCCGGTATGATGGCCGGTCCGTCTTTCCAA
CCGGTGCGCGAAGGGATCTACGACAGCAAAATGAACCCAGGTTTTGCCAC
CGACAGCTCGGAACGCAGGCGTTCGTACCTGGGCGCTGCTCAAACAGTGG
GAATCTCGCTTCTACTTGCTGCTGGTAAAGTTCGGAGTACTAAGAGCAAC
CGCAGCAAGGTTCTGGGATTCCCGTACCGGCGCTGA
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