mRNA_S-firma_F_contig1055.759.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1055.759.1
Unique NamemRNA_S-firma_F_contig1055.759.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig1055.759.1 vs. uniprot
Match: D7FKJ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKJ3_ECTSI)

HSP 1 Score: 412 bits (1058), Expect = 1.650e-132
Identity = 208/251 (82.87%), Postives = 238/251 (94.82%), Query Frame = 3 
Query:  426 QQAGMGLAALVAGVAVGAAPANAAAGTAVEVMRLRFGDKLRRAAKMLDELQEDIANDDWDLVSTYPNAFRSLVPVFTKYTDAAFPTEDPVDTTSRVALRYEVGRFFGAVERLKRAAEEQNNREAQTAFAAMSVAYDRYLKAGNLYDGYDTVTSTEGFYAGVSNTNLKFVPPSKDPPKIQDNVLLLAGPDKGKTGYVIGMEGGGMATTKAIIKLETSSALGMREIKVVPLDYVAKTIEQQGITN-KTSKRMR 1175
            +QAG+ LAA+  G A GAAPA A AG+AVEVMRLRFGDKLRRAAKMLDELQ+DI+N DWDLV+TYPNAFR+LVPVFTKYTDAAFPT+DPVDTTSRVALRYEVGRF+GAVERLKRAAE+QN+REAQ+AFAAMSVAYDRYLKAGNLYDGYD+VTSTEGFYA VSN++LK+VPPSKDPPKI+DNVLL+AGPDKGKTG++IG+EGG ++ TKAI+KLETSSALGMREIKVVPLDYVAKT++QQG+ N KT+K+MR
Sbjct:   95 KQAGLSLAAVAMGGATGAAPAKAQAGSAVEVMRLRFGDKLRRAAKMLDELQDDISNSDWDLVTTYPNAFRTLVPVFTKYTDAAFPTDDPVDTTSRVALRYEVGRFYGAVERLKRAAEQQNSREAQSAFAAMSVAYDRYLKAGNLYDGYDSVTSTEGFYADVSNSSLKYVPPSKDPPKIKDNVLLVAGPDKGKTGFMIGVEGGSLSATKAIVKLETSSALGMREIKVVPLDYVAKTVDQQGMFNSKTTKKMR 345
[Close]
BLAST of mRNA_S-firma_F_contig1055.759.1 vs. uniprot
Match: A0A7S3Y3I2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3I2_HETAK)

HSP 1 Score: 246 bits (628), Expect = 1.560e-70
Identity = 135/229 (58.95%), Postives = 162/229 (70.74%), Query Frame = 3 
Query:  477 AAPANAAAGTAVEVMRLRFGDKLRRAAKMLDELQEDIANDDWDLVSTYPNAFRSLVPVFTKYTDAAFPTEDPVDTTSRVALRYEVGRFFGAVERLKRAAEEQNNREAQTAFAAMSVAYDRYLKAGNLYDGYDTVTSTEGFYAGVSNTNLKFVPPSKDPPKIQDNVLLLAGPDKGKTGYVIGME----GGGMATTKAIIKLETS--SALGMREIKVVPLDYVAKTIEQQG 1145
            A PA AA   A E     +GD+LRR A+ LDELQ DI N+DW+ V+TYP  FR+ VPVFT+YTDA F  E   D  SRVALRYEVGR FGAVERLKRAAE+++ REAQ AFA +SVAYDRYLKAG LYD YD VTSTE F+A V ++ L+F PP+ DPPKI+D VLL AGPDKGKTG +IG+E      G      I+KL+ +      +REIKVVP   VAK ++ +G
Sbjct:   69 ALPAAAAPAPAKEAALKGYGDRLRRIARTLDELQRDIFNEDWEFVATYPATFRAFVPVFTRYTDARFEGEGEADRQSRVALRYEVGRLFGAVERLKRAAEKKDPREAQAAFAQISVAYDRYLKAGYLYDAYDPVTSTEKFFADVPDSALRFAPPAADPPKIKDLVLLTAGPDKGKTGTLIGLEETLGSKGEKKKSGIVKLDNTIGRVSKIREIKVVPYAIVAKRLDTEG 297
[Close]
BLAST of mRNA_S-firma_F_contig1055.759.1 vs. uniprot
Match: A0A0G4GSY0_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GSY0_VITBC)

HSP 1 Score: 234 bits (596), Expect = 1.580e-65
Identity = 118/222 (53.15%), Postives = 165/222 (74.32%), Query Frame = 3 
Query:  483 PANAAAGTAVEVMRLRFGDKLRRAAKMLDELQEDIANDDWDLVSTYPNAFRSLVPVFTKYTDAAFPTEDPVDTTSRVALRYEVGRFFGAVERLKRAAEEQNNREAQTAFAAMSVAYDRYLKAGNLYDGYDTVTSTEGFYAGVSNTNLKFVPPSKDPPKIQDNVLLLAGPDKGKTGYVIGMEGGGMATTK--AIIKLETSSALGMREIKVVPLDYVAKTIEQQ 1142
            P+ AA  TA   +  +   ++R+ A +LDELQ DI ++DWD++++YP   R+ VP+FTKYTD+AFP +DPVD  +R ALRYEVGR FG+VERLKRA ++++ RE + AFAAMSV++DRYLKAG+LY+ YD + STE F+ GV ++ L +VPP +DPPKI+D VLLL GPDKGKTG ++G+EG  +A  K   ++KL+T     +RE+KVVP  ++AK   +Q
Sbjct:   95 PSEAAKNTA---LAQKIAPRIRQIATVLDELQADIYDEDWDILASYPQQLRAYVPIFTKYTDSAFPGKDPVDENTRFALRYEVGRLFGSVERLKRAVDKKDVRETEEAFAAMSVSFDRYLKAGDLYEVYDPIISTEKFFEGVEDSQLVYVPPLRDPPKIRDQVLLLRGPDKGKTGILLGVEGDEVAKVKRKGVVKLDTKVG-SIRELKVVPYAFIAKRKGEQ 312
[Close]
BLAST of mRNA_S-firma_F_contig1055.759.1 vs. uniprot
Match: A0A7S3Y3T3_HETAK (Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3T3_HETAK)

HSP 1 Score: 242 bits (617), Expect = 6.170e-64
Identity = 128/211 (60.66%), Postives = 155/211 (73.46%), Query Frame = 3 
Query:  531 FGDKLRRAAKMLDELQEDIANDDWDLVSTYPNAFRSLVPVFTKYTDAAFPTEDPVDTTSRVALRYEVGRFFGAVERLKRAAEEQNNREAQTAFAAMSVAYDRYLKAGNLYDGYDTVTSTEGFYAGVSNTNLKFVPPSKDPPKIQDNVLLLAGPDKGKTGYVIGME----GGGMATTKAIIKLETS--SALGMREIKVVPLDYVAKTIEQQG 1145
            +GD+LRR A+ LDELQ DI N+DW+ V+TYP  FR+ VPVFT+YTDA F  E   D  SRVALRYEVGR FGAVERLKRAAE+++ REAQ AFA +SVAYDRYLKAG LYD YD VTSTE F+A V ++ L+F PP+ DPPKI+D VLL AGPDKGKTG +IG+E      G      I+KL+ +      +REIKVVP   VAK ++ +G
Sbjct:  596 YGDRLRRIARTLDELQRDIFNEDWEFVATYPATFRAFVPVFTRYTDARFEGEGEADRQSRVALRYEVGRLFGAVERLKRAAEKKDPREAQAAFAQISVAYDRYLKAGYLYDAYDPVTSTEKFFADVPDSALRFAPPAADPPKIKDLVLLTAGPDKGKTGTLIGLEETLGSKGEKKKSGIVKLDNTIGRVSKIREIKVVPYAIVAKRLDTEG 806
[Close]
BLAST of mRNA_S-firma_F_contig1055.759.1 vs. uniprot
Match: A0A7R9UEJ4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEJ4_9STRA)

HSP 1 Score: 215 bits (548), Expect = 1.260e-60
Identity = 101/166 (60.84%), Postives = 131/166 (78.92%), Query Frame = 3 
Query:  528 RFGDKLRRAAKMLDELQEDIANDDWDLVSTYPNAFRSLVPVFTKYTDAAFPTEDPVDTTSRVALRYEVGRFFGAVERLKRAAEEQNNREAQTAFAAMSVAYDRYLKAGNLYDGYDTVTSTEGFYAGVSNTNLKFVPPSKDPPKIQDNVLLLAGPDKGKTGYVIGME 1025
            R G+K+RR A++LD+LQ DI  +DW  +STYP   RS VP+FTKYTD AFP+E  +DT +R ALRYEVGRFFGAVERLKRA + ++  EA+ +FA +S+++DRYLKAGNLY+ YD + STE FY G+ + +L FVPPS + PK +D VLL+AGPDKGKTG +IG+E
Sbjct:   39 RAGEKIRRIARILDDLQRDIFEEDWTFISTYPVELRSFVPIFTKYTDTAFPSESAIDTQTRFALRYEVGRFFGAVERLKRAVDSRDIGEAEASFAQISISFDRYLKAGNLYEQYDPIVSTEKFYEGIPDKDLVFVPPSAETPKTRDPVLLIAGPDKGKTGLLIGIE 204
[Close]
BLAST of mRNA_S-firma_F_contig1055.759.1 vs. uniprot
Match: B7FPD1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FPD1_PHATC)

HSP 1 Score: 194 bits (492), Expect = 1.670e-51
Identity = 100/204 (49.02%), Postives = 136/204 (66.67%), Query Frame = 3 
Query:  531 FGDKLRRAAKMLDELQEDIANDDWDLVSTYPNAFRSLVPVFTKYTDAAFPTEDPVDTTSRVALRYEVGRFFGAVERLKRAAEEQNNREAQTAFAAMSVAYDRYLKAGNLYDGYDTVTSTEGFYAGVSNTNLKFVPPSKDPPKIQDNVLLLAGPDKGKTGYVIGMEGGGMATTKAIIKLETSSALGMREIKVVPLDYVAKTIEQQ 1142
               K+R    ++DELQ D+  + WDLV +YP   RS VPVFT YTD+AFP++ P D   RVALRYEVGRFF +VER K+AA  Q   EA  A++ M++ +DRYL+ G LY  YD   STE ++ G+++  L +  P  DPP ++D V+L+ GP+KGKTG +IGM   G  T K++IKL+     GMREI+VV  D+VAK + +Q
Sbjct:  110 LASKIRNIGSVMDELQRDLMQERWDLVESYPAQLRSFVPVFTTYTDSAFPSDAPTDKGLRVALRYEVGRFFASVERFKQAASRQALDEAYLAYSEMALHFDRYLRVGGLYTYYDDSISTEPYFQGIADDALVYSDPKTDPPFVRDLVILVRGPEKGKTGIIIGMYSDG--TNKSVIKLDRYK--GMREIRVVANDWVAKRLGEQ 309
[Close]
BLAST of mRNA_S-firma_F_contig1055.759.1 vs. uniprot
Match: B8BUB6_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BUB6_THAPS)

HSP 1 Score: 194 bits (493), Expect = 2.240e-51
Identity = 99/204 (48.53%), Postives = 135/204 (66.18%), Query Frame = 3 
Query:  531 FGDKLRRAAKMLDELQEDIANDDWDLVSTYPNAFRSLVPVFTKYTDAAFPTEDPVDTTSRVALRYEVGRFFGAVERLKRAAEEQNNREAQTAFAAMSVAYDRYLKAGNLYDGYDTVTSTEGFYAGVSNTNLKFVPPSKDPPKIQDNVLLLAGPDKGKTGYVIGMEGGGMATTKAIIKLETSSALGMREIKVVPLDYVAKTIEQQ 1142
              +K+R  +K++DELQ D+  + WDLV  YPN  RS VPVFT YTD+AFPT+ P D   RVALRYEVGRFF ++ERLK A   ++  EA  A++ MS+ +DRYL+ G LY  YD   S E ++ G   TNL +V P KDP  ++D ++L  GPDKG+TG VIG+   G  T   ++KL+ +   G+REI+VVP  + AK + +Q
Sbjct:  132 LSNKIRGVSKVMDELQRDLMQERWDLVENYPNQLRSYVPVFTSYTDSAFPTDIPTDQGLRVALRYEVGRFFASLERLKTATSRRSINEAYVAYSDMSLHFDRYLRVGGLYTFYDDTVSLETYFQGTPETNLVYVDPKKDPALVRDLIVLREGPDKGRTGIVIGIYPDGSNT--CVVKLDRTR--GIREIRVVPCMWAAKRLGEQ 331
[Close]
BLAST of mRNA_S-firma_F_contig1055.759.1 vs. uniprot
Match: A0A7S2IJZ6_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IJZ6_9STRA)

HSP 1 Score: 192 bits (488), Expect = 5.380e-51
Identity = 99/202 (49.01%), Postives = 136/202 (67.33%), Query Frame = 3 
Query:  537 DKLRRAAKMLDELQEDIANDDWDLVSTYPNAFRSLVPVFTKYTDAAFPTEDPVDTTSRVALRYEVGRFFGAVERLKRAAEEQNNREAQTAFAAMSVAYDRYLKAGNLYDGYDTVTSTEGFYAGVSNTNLKFVPPSKDPPKIQDNVLLLAGPDKGKTGYVIGMEGGGMATTKAIIKLETSSALGMREIKVVPLDYVAKTIEQQ 1142
            +K+R  A+++DELQ D+  + WDLV  YP   RS VPVFT YTD+AFP+++P D   RVALRYEVGRFF ++ERL++A   ++  EA TAFA MS+ +DRYL+ G LY  YD+  +TE  +  +S+  L F  P KDPP ++D ++L  GPDKGKTG VIG+   G  T   ++KL+      MREI+VVPL +  K + +Q
Sbjct:  109 NKIRGVARVMDELQRDLMQERWDLVEKYPPQIRSYVPVFTTYTDSAFPSDEPTDQGLRVALRYEVGRFFASLERLRQATSRRSLDEAYTAFADMSLHFDRYLRVGGLYTYYDSTITTEPLFKNISDDALVFSDPKKDPPAVRDLIVLTKGPDKGKTGIVIGIYPDGKGT--CVVKLDRYK--DMREIRVVPLLWAGKRLGEQ 306
[Close]
BLAST of mRNA_S-firma_F_contig1055.759.1 vs. uniprot
Match: A0A7S3L2H9_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L2H9_9STRA)

HSP 1 Score: 187 bits (475), Expect = 6.440e-50
Identity = 98/201 (48.76%), Postives = 131/201 (65.17%), Query Frame = 3 
Query:  540 KLRRAAKMLDELQEDIANDDWDLVSTYPNAFRSLVPVFTKYTDAAFPTEDPVDTTSRVALRYEVGRFFGAVERLKRAAEEQNNREAQTAFAAMSVAYDRYLKAGNLYDGYDTVTSTEGFYAGVSNTNLKFVPPSKDPPKIQDNVLLLAGPDKGKTGYVIGMEGGGMATTKAIIKLETSSALGMREIKVVPLDYVAKTIEQQ 1142
            K+R    ++DELQ D+  + WDLV  YP   RS VPVFT YTD AFP++ P D   RVALRYEVGR F +VER   A+  Q+  EA  A+A M++ +DRYL+ G LY  YD   S E ++ GVS+T L F  P KDPP ++D ++L++GPDKGKTG V+     G  + K ++KL+     GMREI+VVP  +VAK + +Q
Sbjct:   54 KIRTVGNIMDELQRDLMQERWDLVGGYPAQLRSYVPVFTTYTDTAFPSDAPTDKGLRVALRYEVGRLFASVERFNLASSRQSLDEAYLAYADMALHFDRYLRVGGLYSYYDDTISNEPYFKGVSDTALVFADPIKDPPLVRDLIVLVSGPDKGKTGIVLAQYRDG--SNKTVVKLDRFK--GMREIEVVPNAWVAKRLGEQ 250
[Close]
BLAST of mRNA_S-firma_F_contig1055.759.1 vs. uniprot
Match: A0A7S2UB68_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UB68_9STRA)

HSP 1 Score: 190 bits (482), Expect = 7.730e-50
Identity = 96/202 (47.52%), Postives = 134/202 (66.34%), Query Frame = 3 
Query:  537 DKLRRAAKMLDELQEDIANDDWDLVSTYPNAFRSLVPVFTKYTDAAFPTEDPVDTTSRVALRYEVGRFFGAVERLKRAAEEQNNREAQTAFAAMSVAYDRYLKAGNLYDGYDTVTSTEGFYAGVSNTNLKFVPPSKDPPKIQDNVLLLAGPDKGKTGYVIGMEGGGMATTKAIIKLETSSALGMREIKVVPLDYVAKTIEQQ 1142
            +K+R   ++LDELQ D+  + WDLV  YPN  RS VPVFT YTD+AFP+++P D   RVALRYEVGRFF ++ER ++A   +   EA  A++ M++ +DRYL  G LY  YD V +TE ++ G+S + L +  P KD P ++D ++L+ GPDKGKTG VIG+   G  T    +KL+ S   GMREIK+VP  +  K + +Q
Sbjct:  137 NKIRSIGQVLDELQRDLMQERWDLVEQYPNQLRSYVPVFTTYTDSAFPSDEPTDKGLRVALRYEVGRFFASLERFRQAVARRALSEAYVAYSDMALHFDRYLHVGGLYTYYDDVVTTEVYFKGISESALVYADPIKDAPDVRDLIVLVKGPDKGKTGIVIGIYPDG--TNNCAVKLDRSK--GMREIKIVPRSWAGKRLGEQ 334
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1055.759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKJ3_ECTSI1.650e-13282.87Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3Y3I2_HETAK1.560e-7058.95Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0G4GSY0_VITBC1.580e-6553.15Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A7S3Y3T3_HETAK6.170e-6460.66Glutamyl-tRNA(Gln) amidotransferase subunit B, mit... [more]
A0A7R9UEJ4_9STRA1.260e-6060.84Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
B7FPD1_PHATC1.670e-5149.02Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
B8BUB6_THAPS2.240e-5148.53Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2IJZ6_9STRA5.380e-5149.01Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S3L2H9_9STRA6.440e-5048.76Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S2UB68_9STRA7.730e-5047.52Hypothetical protein n=1 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1055contigS-firma_F_contig1055:2..4554 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FKJ3
Max annot lvl2759|Eukaryota
Evalue1.04e-140
EggNOG OGs2BGND@1|root,2S19T@2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_001860.1
Exons6
Model size2929
Cds size750
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1055.759.1prot_S-firma_F_contig1055.759.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1055 439..2812 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.7380183-UTR-S-firma_F_contig1055:1..4381622815590.7380183-UTR-S-firma_F_contig1055:1..438Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1055 2..438 +
1696949438.5064723-UTR-S-firma_F_contig1055:1..4381696949438.5064723-UTR-S-firma_F_contig1055:1..438Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1055 2..438 +
1622815590.8123589-UTR-S-firma_F_contig1055:2812..45541622815590.8123589-UTR-S-firma_F_contig1055:2812..4554Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1055 2813..4554 +
1696949438.577798-UTR-S-firma_F_contig1055:2812..45541696949438.577798-UTR-S-firma_F_contig1055:2812..4554Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1055 2813..4554 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.747805-CDS-S-firma_F_contig1055:438..5971622815590.747805-CDS-S-firma_F_contig1055:438..597Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1055 439..597 +
1696949438.517211-CDS-S-firma_F_contig1055:438..5971696949438.517211-CDS-S-firma_F_contig1055:438..597Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1055 439..597 +
1622815590.7567403-CDS-S-firma_F_contig1055:913..10381622815590.7567403-CDS-S-firma_F_contig1055:913..1038Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1055 914..1038 +
1696949438.5274746-CDS-S-firma_F_contig1055:913..10381696949438.5274746-CDS-S-firma_F_contig1055:913..1038Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1055 914..1038 +
1622815590.7662914-CDS-S-firma_F_contig1055:1321..14451622815590.7662914-CDS-S-firma_F_contig1055:1321..1445Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1055 1322..1445 +
1696949438.5380375-CDS-S-firma_F_contig1055:1321..14451696949438.5380375-CDS-S-firma_F_contig1055:1321..1445Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1055 1322..1445 +
1622815590.7765253-CDS-S-firma_F_contig1055:1789..19121622815590.7765253-CDS-S-firma_F_contig1055:1789..1912Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1055 1790..1912 +
1696949438.5465217-CDS-S-firma_F_contig1055:1789..19121696949438.5465217-CDS-S-firma_F_contig1055:1789..1912Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1055 1790..1912 +
1622815590.7883985-CDS-S-firma_F_contig1055:2212..23441622815590.7883985-CDS-S-firma_F_contig1055:2212..2344Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1055 2213..2344 +
1696949438.554859-CDS-S-firma_F_contig1055:2212..23441696949438.554859-CDS-S-firma_F_contig1055:2212..2344Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1055 2213..2344 +
1622815590.8019595-CDS-S-firma_F_contig1055:2725..28121622815590.8019595-CDS-S-firma_F_contig1055:2725..2812Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1055 2726..2812 +
1696949438.5643106-CDS-S-firma_F_contig1055:2725..28121696949438.5643106-CDS-S-firma_F_contig1055:2725..2812Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1055 2726..2812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1055.759.1

>prot_S-firma_F_contig1055.759.1 ID=prot_S-firma_F_contig1055.759.1|Name=mRNA_S-firma_F_contig1055.759.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=250bp
MGLAALVAGVAVGAAPANAAAGTAVEVMRLRFGDKLRRAAKMLDELQEDI
ANDDWDLVSTYPNAFRSLVPVFTKYTDAAFPTEDPVDTTSRVALRYEVGR
FFGAVERLKRAAEEQNNREAQTAFAAMSVAYDRYLKAGNLYDGYDTVTST
EGFYAGVSNTNLKFVPPSKDPPKIQDNVLLLAGPDKGKTGYVIGMEGGGM
ATTKAIIKLETSSALGMREIKVVPLDYVAKTIEQQGITNKTSKRMRTVS*
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mRNA from alignment at S-firma_F_contig1055:2..4554+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1055.759.1 ID=mRNA_S-firma_F_contig1055.759.1|Name=mRNA_S-firma_F_contig1055.759.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4553bp|location=Sequence derived from alignment at S-firma_F_contig1055:2..4554+ (Sphaerotrichia firma ET2_F female)
GTGCTCGCGCGATGCGCATGAACAACATATGCCCGTAGAGAGCTTGGCGC
TGGCCGGCGATCGGGGCTGGGGGGGGGGACAGGACGCTCGTTCTCGCGCT
CGGGGTGTTCGCTCTTGGCCTCAGTAAGACAGCGCTGCTCACAAATTCGG
GTTTGACGACGGCAGCCTTTGACGACGAGTCGACCGTTTTCAAGTTTACC
ACTTCGTGCAGACCAGCAGTATCGGATTGACAGCATGGTCTCAGTATCTT
GACACCCTATTTGGCATTTTTAAGACTCTTCATGTTTTTTTACTCTTCAA
GCATTTTGTAGCTCATTCAAGCACATTTAGACGTCCGTTGCTCTTCTCCC
CCCCCCTTTTGGTGGTCTTCGTTCGGCCTTTTGTCTCTCCCTGTGTTACC
TCTTGTGCCGTCTCTCTCTTTGCCGCAGCAAGCCGGGATGGGCCTGGCCG
CCTTGGTGGCGGGGGTGGCGGTGGGGGCGGCCCCCGCTAACGCGGCGGCG
GGTACGGCAGTGGAGGTGATGCGGTTGCGGTTCGGCGACAAGCTTCGAAG
GGCGGCCAAGATGCTGGACGAGCTCCAGGAGGACATTGCGAACGATGTGA
GAGATAGACGAGAGAGCGAGTGAGCGCAGCGTAATCGTCGAGAAGAGAAG
ACCGGTGTGCCACATTTTTCACGTACTGAGCTCGTGTGCGGTTTTGTCCT
TTCTGTCTGTTGGTCGGTGGGGTTGCGTTCCCGCGTTCCACGCAAGCCAG
TCTTCACGAGGGTGAAGAGCTTCACTCTCACGCTTTGATTGTTTTTTCAT
CAGGAGATAATACATATATACAAAATCGACAGAACGCTCCTGATGTTGGT
TTCTCTTGGCTCTTGGATGTTGTGCTTGGTCCCCGCGCGCCTTTCGCCCT
CTCGCGCGGCAGGACTGGGACCTGGTGTCGACCTACCCGAACGCGTTCCG
GTCTCTGGTACCAGTGTTCACCAAGTACACGGACGCCGCCTTCCCGACTG
AAGACCCCGTGGACACCACGTCGAGGGTGGCGCTTAGGTGAGACGGGGAG
ACGGCGCTGCTCGAACACAACACGCATGTAGGATAGCGTCGTGTACAAGC
CGTACCCCGGTGTGGCCCTGGTCCTTGACCACCGCAAGCAACACACGACA
TCGACCGCCTCGTAGCCTTGGGGTTTATCCGCTTTACCATTCGACGGCTC
GTTAGGTCAATCGTTAGTTTGCAACACCACGGATGGGACCCGTTTTTCCG
GCACATTCGACGCCGTACGTGACACCAGCGTTGTTTCCTGTCGCTGACTT
TCACGACGCAACTGCGGCAGGTACGAGGTTGGAAGATTCTTCGGCGCGGT
GGAACGCCTAAAACGCGCGGCAGAAGAGCAAAACAACCGCGAGGCACAGA
CCGCTTTCGCGGCCATGTCGGTGGCGTACGACCGATATCTCAAGGTGAGC
ATGACTTGCCACTTGCGTCGTTGACAAGGGAACCTTCAGTCTCTGGTATT
GGTTATACGCTACTGCTGTCGCGCCGCTACCAGTTCCCGGAGGAAAGGTT
AACCACGCTGCACAACGGAAGTATCGACAATCTTGTCACCCTTTCAAATG
ATCACACACTTGCCTCTGTCCAAGTCGAAAGAGCATGTTGTTTGTCTAAC
CAACACTCTACGTGATGCTAGATGGTGCCCGGCTTGGGGTGTTGGGTTGG
AGGAGCATACTCCTTGGACCTCGCGCGCGGCATGTACGCTTGTTTCAGCG
CTGAGCTTCGTCGCGTGATGTGCACCTTCTTTGTTCAGGCCGGTAACCTG
TATGACGGGTACGACACCGTCACGTCCACCGAGGGATTCTACGCCGGTGT
CTCCAACACCAACCTCAAGTTCGTGCCTCCCAGCAAGGACCCTCCCAAGA
TTCAGGACAATGTGAGGAAGAAAAACGTCGCTCACTAGGCGCTGTTCTTT
GAAGCTCCGCAACAGCACCAGTGCCTGGCGGTGGAAGTAGGATCATCGAA
GGATGTTGGTTGGCTGCTGTCGACATCTCACGTCTTTTATGCAACAGTCG
CCGCTGTGTGCGGCTGGAGGAAGAAACACCTTGAGGTCATTTCAGTGCCA
GGACGAACAAAATATGTGGTTCATATCCAAGCTTTTCGAGGTTACAACAC
CGTTTCTACGGCAATATCTTGTCGTTGCCCACCCGCCCGCCTGCCCTGTG
CGTCTGTCCAGGTGCTCTTGCTAGCGGGGCCCGACAAGGGGAAAACCGGG
TACGTGATCGGCATGGAAGGCGGGGGCATGGCGACGACGAAGGCGATCAT
CAAGCTAGAAACGAGCTCTGCCCTTGGCATGCGCGAGATCAAGGTGCGGA
AATGTGGAAGGAAGGAGGGAAGGGATTTCGTGCGAATATACTCGTGCGAG
TGTCCTTTGCGTGTTGCGTATGTTTCGCTCTGTGTGCTACAGACGGAGAC
ACAGAGAGAGAGGGCGCCGTGGCCACGTCGTGTCGTTTCGACCCAAACCG
CTGTACGTGTGAGGAAGCTTGATAGGTTATTGCGCGCTTCTGTTGTGCCG
CAGGCTCGACAGTGTAGCGGGCAGGAGAGGGCTCTATGCAATTGTAGGTT
GCAGTAGATATCGAGCAGCGTATGTATTTCCCCTTCAAATGGGCCAACTT
CTCGCTTGCCTCACACAATATCGATTCCTCTACCCCCCCCCGCACCGCCC
GCCCGTGGTTTGATGTGCGCAAAGGTTGTGCCCCTCGATTATGTGGCCAA
GACGATCGAGCAGCAAGGCATAACGAACAAGACAAGCAAGAGGATGAGAA
CCGTGTCTTAACCTAAAAAGAGTGTCGACGCAACGAGCGACGTGGCGGCT
CTGTGTCTTGACGGGAGTACCATGGATGCAAGGGCTTGGGAAGATGGAAA
TCGTGCAAAGCGACAGCTATTGGTTCGGTTTGTAGGCCTCCGGAACTTTG
GTCGTTTTTTCGGGTCAATCGAGAAAAACCAGTTGGTGAGAGTATATAGC
TTATAGCTCATCGAGCCTTGTCGCGGGTTGACACGTCTACGGCATCTCCG
TGCTGCGCTCTGTGTCAGGGAGGTTGATTGGATACGGCGTGTAGTATCCA
GGATGTGAGAGCTTGGGTCAGCTTCCCTTGGAACCACGTCGGCTTTTCTC
AACTATATCAACACCAGGAAGTGAAGGACGATTAGCGTGCCAGAGAAAGT
TCAGCCCTCCCTGCTGTAGAAGGGTTTGGAGGTGACCCACGTCGCGCGAG
AGACAGAGGACAGTAATCACGTTGAGCGCGCAGTGCCTGGACGACGAAAC
TGATTTTGGCCGGAGGCTACGGCGGCGCAGAAGTGCGGTTTCTCTTTTGT
GTATGTTATATTTTCGATGGAAAGTATCAAACCTGATTCGTTTCCCTAGA
CTTGTCTTGTCGTCCCAGTTCCGTGGGAAGAGTCTCTCTCACGCCGTGAG
TGTTGACGTCGTGTCGCGACGACGTGCCGTTGGTAATCCACTTCCTGAAT
CGAGAGCGTGTAGCATCGAGACGCTTTTCGCCAAAAGTTATTATACTTCG
TATTAGAGTAAACTACAGCTTGGAGAGGCCTTGCTCCCTTTTTGGAGGGG
TTGGCTTACTGCTGTGCGAGTTCGTACTTCGCCAGGGGGTTGTTTTTTGT
TCTTTTCGGTTTCCCTCTTAACCCCGCCAGTGTAGTAACTCATGCCGAGA
GCAAGAAATTAGCTACGGACCTGCACCACACGGTATAGTACGTACTTCGG
TAGGGGCGAGGTGTGTGTTGACGCCCCCTTGGCTTTGGTCGGAAAAGTGA
CTTTCGCGACAAAGTAGGCATGGGGGGAAACCTTAGCTTCGAATTATGAT
ACCTATTTTTTCGTCGGGAGGGACAATGCCAAACGCGTTAGATCCGATTT
GCTCTCTGTGTCGACACTGGCAAGTGCTTGAGTCCTACAACAAATAAACT
GTCGTGTCGTATCAAGCCTCCGCGCTTTTTGGCGCCCCAGAAGCCTGTAA
GCTGAAACGCTACCTGAACCATCGCAAGTCTTCTCTCGATACTACGAAGT
AAACGTTCAGGGTGATGCACGAACTGTGAGGCACGTAGCAAGCTCTGCCC
AACATGCGATGGTCCTCCTGTCTCACAAACAAGCTCTTGATCTGGTTTTA
GACGAGGGGAAGCGACATATCGGTTGTTGTGGTTTTACTACAGGCTACAG
AAGGAAGGCTGCTGCTGTGGCACCCTTTCGAATCTTCTTCACTTCATTCC
TTCGATCCTTTCTGTCTGCGGAGGAAATACCGCCTTTCTTGCTGCACTGC
ATGGGTCCTGCTTTGATACCCCCCGAACAGCATCTCCAAGCCCGGAGAGC
CTACCAGCTACTAAACACAAATAAAAAAAAAACACACACACACGGCCTCT
CCGAAAAGGGCGGTGAGACGCAGCAAGATTTCGTCGATCAGCTCGAATAC
TCCTCCTGTAGATTACTTGACAAAGCGGCTGGTGCGCACCAGTCTCCGCA
CGGATAAATACGAGCATCAACGGTCCTCCGGGAAGCTTTGGTCTGCAAGT
CGT
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Coding sequence (CDS) from alignment at S-firma_F_contig1055:2..4554+

>mRNA_S-firma_F_contig1055.759.1 ID=mRNA_S-firma_F_contig1055.759.1|Name=mRNA_S-firma_F_contig1055.759.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1500bp|location=Sequence derived from alignment at S-firma_F_contig1055:2..4554+ (Sphaerotrichia firma ET2_F female)
ATGGGCCTGGCCGCCTTGGTGGCGGGGGTGGCGGTGGGGGCGGCCCCCGC
TAACGCGGCGGCGGGTACGGCAGTGGAGGTGATGCGGTTGCGGTTCGGCG
ACAAGCTTCGAAGGGCGGCCAAGATGCTGGACGAGCTCCAGGAGGACATT
GCGAACGATATGGGCCTGGCCGCCTTGGTGGCGGGGGTGGCGGTGGGGGC
GGCCCCCGCTAACGCGGCGGCGGGTACGGCAGTGGAGGTGATGCGGTTGC
GGTTCGGCGACAAGCTTCGAAGGGCGGCCAAGATGCTGGACGAGCTCCAG
GAGGACATTGCGAACGATGACTGGGACCTGGTGTCGACCTACCCGAACGC
GTTCCGGTCTCTGGTACCAGTGTTCACCAAGTACACGGACGCCGCCTTCC
CGACTGAAGACCCCGTGGACACCACGTCGAGGGTGGCGCTTAGGACTGGG
ACCTGGTGTCGACCTACCCGAACGCGTTCCGGTCTCTGGTACCAGTGTTC
ACCAAGTACACGGACGCCGCCTTCCCGACTGAAGACCCCGTGGACACCAC
GTCGAGGGTGGCGCTTAGGTACGAGGTTGGAAGATTCTTCGGCGCGGTGG
AACGCCTAAAACGCGCGGCAGAAGAGCAAAACAACCGCGAGGCACAGACC
GCTTTCGCGGCCATGTCGGTGGCGTACGACCGATATCTCAAGGTACGAGG
TTGGAAGATTCTTCGGCGCGGTGGAACGCCTAAAACGCGCGGCAGAAGAG
CAAAACAACCGCGAGGCACAGACCGCTTTCGCGGCCATGTCGGTGGCGTA
CGACCGATATCTCAAGGCCGGTAACCTGTATGACGGGTACGACACCGTCA
CGTCCACCGAGGGATTCTACGCCGGTGTCTCCAACACCAACCTCAAGTTC
GTGCCTCCCAGCAAGGACCCTCCCAAGATTCAGGACAATGCCGGTAACCT
GTATGACGGGTACGACACCGTCACGTCCACCGAGGGATTCTACGCCGGTG
TCTCCAACACCAACCTCAAGTTCGTGCCTCCCAGCAAGGACCCTCCCAAG
ATTCAGGACAATGTGCTCTTGCTAGCGGGGCCCGACAAGGGGAAAACCGG
GTACGTGATCGGCATGGAAGGCGGGGGCATGGCGACGACGAAGGCGATCA
TCAAGCTAGAAACGAGCTCTGCCCTTGGCATGCGCGAGATCAAGGTGCTC
TTGCTAGCGGGGCCCGACAAGGGGAAAACCGGGTACGTGATCGGCATGGA
AGGCGGGGGCATGGCGACGACGAAGGCGATCATCAAGCTAGAAACGAGCT
CTGCCCTTGGCATGCGCGAGATCAAGGTTGTGCCCCTCGATTATGTGGCC
AAGACGATCGAGCAGCAAGGCATAACGAACAAGACAAGCAAGAGGATGAG
AACCGTGTCTTAAGTTGTGCCCCTCGATTATGTGGCCAAGACGATCGAGC
AGCAAGGCATAACGAACAAGACAAGCAAGAGGATGAGAACCGTGTCTTAA
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