mRNA_S-firma_F_contig1054.751.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1054.751.1
Unique NamemRNA_S-firma_F_contig1054.751.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig1054.751.1 vs. uniprot
Match: D7G4L5_ECTSI (NDK domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4L5_ECTSI)

HSP 1 Score: 604 bits (1558), Expect = 6.330e-215
Identity = 315/401 (78.55%), Postives = 344/401 (85.79%), Query Frame = 1
Query:    1 MERKEVVFVLGGPGSGKGTHCARIASEFGYTHLSTGDLLREEQKKETELATKIADCIRDGQLVPSSTMVALVKEAILNGDSDRFLLDGFPRSKDNLEAWFDAFSDNEVKVSFTLFLHCPKEELKKRLLERGETSGRADDNVETVLKRFDTFEKESLPVVEQLQLLGMVRKVSTVPARELVSHRVRRFFRGCRLVDHLERTLALIKPDAVGSGNAGDIIARAEKEGFVVVGKIDGRTWSREDAEVFYAEHKDKPFFDTLVGFMSSGPIVQICLEKVNAIKAWRELTGPTNAADAKTAEPSSIRALYGTDGTKNAVHGSDSFASALREVNFCFNSAAEGAAVAAARLDTGDEMGQEE------GSAVGGPKYXXXXXXXXXXATEEKTLALVKPGVSELHSGE 1185
            MER EVVFVLGGPGSGKGTHCARIA+EFGYTHLSTGDLLREEQKKE+ELATKIA+CIRDGQLVPSSTMVAL+KEAILNGDS RFLLDGFPRSKDNLEAWFDAFSD E++VSFTLFLHCPKEELKKRLLERGETSGRADDNVETVLKRFDTFEKESLPVVE+L+ LGMVRKVSTVPARELV+HRVRR+F+GCRLVD +ERTLALIKPDA  +GN  +I+ R E+EGFVVVGKI+GR WS++DA  FY+EH  K FFDTLV FMSSGPIVQ+CLEKV AIKAWREL GPTN+ DAKT EPSSIRALYGT GTKNAVHGSDSFASALRE+NFCF+ A E AAV A   +T    G E+      GS  GG             A EE+TLAL+KPG+SELHSGE
Sbjct:    1 MERNEVVFVLGGPGSGKGTHCARIAAEFGYTHLSTGDLLREEQKKESELATKIAECIRDGQLVPSSTMVALLKEAILNGDSKRFLLDGFPRSKDNLEAWFDAFSDEEIQVSFTLFLHCPKEELKKRLLERGETSGRADDNVETVLKRFDTFEKESLPVVEELRRLGMVRKVSTVPARELVAHRVRRYFKGCRLVDPVERTLALIKPDA--TGNTNEILNRVEQEGFVVVGKIEGRVWSQQDAATFYSEHSGKAFFDTLVDFMSSGPIVQLCLEKVGAIKAWRELAGPTNSTDAKTLEPSSIRALYGTCGTKNAVHGSDSFASALREINFCFDQAGEAAAVVAPAEETAPAGGAEQNINGRDGSVDGG-------YNEDGFAKEERTLALLKPGISELHSGE 392          
BLAST of mRNA_S-firma_F_contig1054.751.1 vs. uniprot
Match: A0A6H5KI40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI40_9PHAE)

HSP 1 Score: 445 bits (1145), Expect = 5.210e-151
Identity = 227/290 (78.28%), Postives = 254/290 (87.59%), Query Frame = 1
Query:  202 MVALVKEAILNGDSDRFLLDGFPRSKDNLEAWFDAFSDNEVKVSFTLFLHCPKEELKKRLLERGETSGRADDNVETVLKRFDTFEKESLPVVEQLQLLGMVRKVSTVPARELVSHRVRRFFRGCRLVDHLERTLALIKPDAVGSGNAGDIIARAEKEGFVVVGKIDGRTWSREDAEVFYAEHKDKPFFDTLVGFMSSGPIVQICLEKVNAIKAWRELTGPTNAADAKTAEPSSIRALYGTDGTKNAVHGSDSFASALREVNFCFNSAAEGAAVAAARLDTGDEMGQEEGS 1071
            MVAL+KEAIL GDS RFLLDGFPRSKDNLEAWFDAFSD E++VSFTLFLHCPKEELKKRLLERGETSGRADDNVETVLKRFDTFEKESLPV E+L+ LGMVRKVSTVPA+ELV+HRV R+F+GCRLVD +ERTLALIKPDA  +GN G+I+ R E+EGFVVVGKI+GR WS++DA  FY+EH+ K FFDTLV FMSSGPIVQ+CLEKV AIKAW+EL GPTN+ DAKT EPSSIRALYGT GTKNAVHGSDSFASALRE+NFCF+ A + AAV A   +T    G E+ S
Sbjct:    1 MVALLKEAILKGDSKRFLLDGFPRSKDNLEAWFDAFSDEEIQVSFTLFLHCPKEELKKRLLERGETSGRADDNVETVLKRFDTFEKESLPVFEELERLGMVRKVSTVPAQELVAHRVSRYFKGCRLVDPVERTLALIKPDA--TGNTGEILNRVEQEGFVVVGKIEGRMWSQQDAATFYSEHRGKAFFDTLVDFMSSGPIVQLCLEKVGAIKAWKELAGPTNSTDAKTLEPSSIRALYGTCGTKNAVHGSDSFASALREINFCFDQAGKAAAVVAPAEETAPAGGAEQKS 288          
BLAST of mRNA_S-firma_F_contig1054.751.1 vs. uniprot
Match: A0A6V1RU54_HETAK (UMP-CMP kinase n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RU54_HETAK)

HSP 1 Score: 337 bits (865), Expect = 7.330e-106
Identity = 175/331 (52.87%), Postives = 227/331 (68.58%), Query Frame = 1
Query:    1 MERKEVVFVLGGPGSGKGTHCARIASEFGYTHLSTGDLLREEQKKETELATKIADCIRDGQLVPSSTMVALVKEAILNGDSDRFLLDGFPRSKDNLEAWFDAFSDNEVKVSFTLFLHCPKEELKKRLLERGETSGRADDNVETVLKRFDTFEKESLPVVEQLQLLGMVRKVSTVPARELVSHRVRRFFRGCRLVDHLERTLALIKPDAVGSGNAGDIIARAEKEGFVVVGKIDGRTWSREDAEVFYAEHKDKPFFDTLVGFMSSGPIVQICLEKVNAIKAWRELTGPTNAADAKTAEPSSIRALYGTDGTKNAVHGSDSFASALREVNFCF 993
            + + +V+FVLGGPGSGKGT CA +  ++G+ HLS GDLLREE+++    A  I + IR+G++VP    V L+K A+      +FL+DGFPRS DN E WF    D +V VS  LF  CP+E + +RLL+RGE+SGR DDN+E + KRF TF  +S+PVVE  + LG+VR+VS+V   ++V  +VR+   G  L    +RTLA+IKPDAV +G A +I+ R + EGFVVV + +  T SR   E FYAEHK K FF+TL GFM+SGP+  +CLEK  A+K WR L GPTN   AK   P S+RALYGTDGT NA HGSDS  SALRE+ F F
Sbjct:  212 LTKPQVIFVLGGPGSGKGTQCANLVRDYGFVHLSAGDLLREERQRGGPNAELIENYIREGKIVPVEITVGLIKAAMEQSGGRKFLVDGFPRSLDNTEGWFAVMGD-DVAVSMVLFFDCPEEVMTQRLLKRGESSGRIDDNIEAIQKRFRTFRDQSMPVVENFRRLGLVREVSSVAPVDVVYSKVRQLLDGLALCPPRQRTLAMIKPDAVRAGKADEIVQRLQAEGFVVVARKEA-TLSRAQVEEFYAEHKGKSFFETLAGFMTSGPMQALCLEKEGAVKGWRALMGPTNTEKAKAEAPQSLRALYGTDGTMNATHGSDSTFSALRELAFHF 540          
BLAST of mRNA_S-firma_F_contig1054.751.1 vs. uniprot
Match: A0A835YVW4_9STRA (UMP-CMP kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVW4_9STRA)

HSP 1 Score: 329 bits (843), Expect = 1.510e-102
Identity = 175/331 (52.87%), Postives = 224/331 (67.67%), Query Frame = 1
Query:    1 MERKEVVFVLGGPGSGKGTHCARIASEFGYTHLSTGDLLREEQKKETELATKIADCIRDGQLVPSSTMVALVKEAILNGDSDRFLLDGFPRSKDNLEAWFDAFSDNEVKVSFTLFLHCPKEELKKRLLERGETSGRADDNVETVLKRFDTFEKESLPVVEQLQLLGMVRKVSTVPARELVSHRVRRFFRGCRLVDHLERTLALIKPDAVGSGNAGDIIARAEKEGFVVVGKIDGRTWSREDAEVFYAEHKDKPFFDTLVGFMSSGPIVQICLEKVNAIKAWRELTGPTNAADAKTAEPSSIRALYGTDGTKNAVHGSDSFASALREVNFCF 993
            + R  VVFVLGGPGSGKGT CA I  EFGYTHLS GDLLREEQ   +++   I   I++G++VP    + L+K A+    +  FL+DGFPRS +N+E WF    D   +V+F LF  CP+E + +RLL+RG TSGRADDN  ++ KRF TF   S+PVVE L  LG VR VS  P  E+V  RV RFF+G  ++   ERTLA+IKPDA+ +G+   +I R E+EGFV+V K    T + E  + FY EH  KPFF+ L  FM+SGP   + LE+V+AI+AWR L GPTN   A+  +P S+RALYGTDG +NA HGSDS ASA+RE+ F F
Sbjct:  212 IRRYSVVFVLGGPGSGKGTQCANIVREFGYTHLSAGDLLREEQNCGSDVGEMIKTFIKEGKIVPVEVTIRLLKTAMERSGARDFLIDGFPRSFENMEGWFKEMGD-VAEVAFVLFFDCPEEVMAERLLKRGATSGRADDNEASIRKRFVTFRDTSMPVVEALARLGKVRIVSAAPPPEVVFARVSRFFKGLAMIPPTERTLAIIKPDAMAAGSEPAMIQRLEQEGFVIVEKKT-ETLTSEKVDGFYQEHIGKPFFEGLKKFMTSGPCTALSLERVDAIRAWRNLLGPTNTEKARAEKPDSLRALYGTDGQRNAAHGSDSTASAIRELAFWF 540          
BLAST of mRNA_S-firma_F_contig1054.751.1 vs. uniprot
Match: F6UHS2_CIOIN (UMP-CMP kinase n=1 Tax=Ciona intestinalis TaxID=7719 RepID=F6UHS2_CIOIN)

HSP 1 Score: 181 bits (458), Expect = 1.760e-51
Identity = 92/189 (48.68%), Postives = 127/189 (67.20%), Query Frame = 1
Query:    1 MERKEVVFVLGGPGSGKGTHCARIASEFGYTHLSTGDLLREEQKK-ETELATKIADCIRDGQLVPSSTMVALVKEAILNGDSDRFLLDGFPRSKDNLEAWFDAFSDNEVKVSFTLFLHCPKEELKKRLLERGETSGRADDNVETVLKRFDTFEKESLPVVEQLQLLGMVRKVSTVPARELVSHRVRRFF 564
            M + ++VFVLGGPG+GKGT C++I   FGYTHLS GDLLR E+K   +++ T I  CI++G++VP      L+K AI    + +FL+DGFPR+KDNL+ W +   D +V V F L+L CP+E   KR+L RG TSGR DDNVE++ KRF T+  E+LP+++  +  G VR V T    + V  RVR+ F
Sbjct:   24 MSKPQIVFVLGGPGAGKGTQCSKIVETFGYTHLSAGDLLRAERKNPSSKVGTLIERCIKEGKIVPVKITCGLLKTAIFANKNTKFLIDGFPRNKDNLDGWDEEMGD-KVDVQFILYLDCPEEVCTKRILNRGLTSGRTDDNVESLKKRFQTYVNETLPIIKHYEKDGKVRSVVTDCTPDEVFERVRKHF 211          
BLAST of mRNA_S-firma_F_contig1054.751.1 vs. uniprot
Match: H2ZHH9_CIOSA (UMP-CMP kinase n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2ZHH9_CIOSA)

HSP 1 Score: 179 bits (453), Expect = 5.080e-51
Identity = 88/188 (46.81%), Postives = 133/188 (70.74%), Query Frame = 1
Query:    4 ERKEVVFVLGGPGSGKGTHCARIASEFGYTHLSTGDLLREEQKK-ETELATKIADCIRDGQLVPSSTMVALVKEAILNGDSDRFLLDGFPRSKDNLEAWFDAFSDNEVKVSFTLFLHCPKEELKKRLLERGETSGRADDNVETVLKRFDTFEKESLPVVEQLQLLGMVRKVSTVPARELVSHRVRRFF 564
            ++ ++VFVLGGPG+GKGT CA+I  +FGYTHLS GDLLR E+K  E+E+   I   I +G++VP      L+++AI + ++++FL+DGFPR++DNL  W D   D +V+V F L+L CPKE   +R+L RG+TSGR+DDNVE++ KRF+T+  E++P+++  +    VR V T  + + V  RV++ F
Sbjct:    4 KKPQIVFVLGGPGAGKGTQCAKIVEKFGYTHLSAGDLLRAERKNPESEVGNLIETYITEGKIVPVKITCGLLEKAISSSENNKFLIDGFPRNEDNLTGWSDQMGD-KVEVKFVLYLDCPKEICTERILNRGKTSGRSDDNVESLHKRFETYVNETIPIIKHYEAENKVRHVLTEVSADEVFERVKKHF 190          
BLAST of mRNA_S-firma_F_contig1054.751.1 vs. uniprot
Match: UPI0009E5DDD4 (UMP-CMP kinase-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E5DDD4)

HSP 1 Score: 178 bits (451), Expect = 1.990e-50
Identity = 84/184 (45.65%), Postives = 127/184 (69.02%), Query Frame = 1
Query:   16 VVFVLGGPGSGKGTHCARIASEFGYTHLSTGDLLREEQKKETELATKIADCIRDGQLVPSSTMVALVKEAILNGDSDRFLLDGFPRSKDNLEAWFDAFSDNEVKVSFTLFLHCPKEELKKRLLERGETSGRADDNVETVLKRFDTFEKESLPVVEQLQLLGMVRKVSTVPARELVSHRVRRFFR 567
            V+FVLGGPG+GKGT C RI  EFGY HLS GDLLREE+   +E    I  CI++G++VP    ++L+++A+      +FL+DGFPR++DNL+ W     + +V VS  LF  C ++E  KR++ERG++SGR+DDN+E++ KRF T+E +++P++E  Q LG+VRK+  + + + V   V+   R
Sbjct:   27 VIFVLGGPGAGKGTQCERIVEEFGYIHLSAGDLLREERASGSENGDLIESCIKEGKIVPVEITISLIEKAMNKNSVKKFLIDGFPRNEDNLQGW-KRVMEGKVDVSCVLFFECAEDECIKRIMERGKSSGRSDDNIESLRKRFYTYETQTMPIIEHYQKLGLVRKIQAIKSPDEVFEEVQSVLR 209          
BLAST of mRNA_S-firma_F_contig1054.751.1 vs. uniprot
Match: W4G8P5_9STRA (UMP-CMP kinase n=6 Tax=Aphanomyces TaxID=100860 RepID=W4G8P5_9STRA)

HSP 1 Score: 176 bits (447), Expect = 1.980e-49
Identity = 85/178 (47.75%), Postives = 124/178 (69.66%), Query Frame = 1
Query:    7 RKEVVFVLGGPGSGKGTHCARIASEFGYTHLSTGDLLREEQKKETELATKIADCIRDGQLVPSSTMVALVKEAILNGDSDRFLLDGFPRSKDNLEAWFDAFSDNEVKVSFTLFLHCPKEELKKRLLERGETSGRADDNVETVLKRFDTFEKESLPVVEQLQLLGMVRKVSTVPARELV 540
            R +V+FVLGGPGSGKGT C++I ++FG+ HLS GDLLREE+   +     I   IRDG +VP    + L+++A+L    D FL+DGFPR+ DNLE W    +D  V V+  LF  CP+EE++KRLLERG+TSGR DDN++ + KRF T+ + ++P++E   L   V ++S++P+ ++V
Sbjct:    7 RSKVLFVLGGPGSGKGTQCSKIVAKFGFVHLSAGDLLREERSSGSPNGDMIDRMIRDGAIVPVKVTLDLIRKAMLESGRDLFLIDGFPRNFDNLEGWEAEMTD--VDVAGVLFYDCPEEEMEKRLLERGKTSGRTDDNIDAIRKRFTTYLESTMPIIEHFALKDQVFRISSIPSPDVV 182          
BLAST of mRNA_S-firma_F_contig1054.751.1 vs. uniprot
Match: A0A7S0M1V9_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M1V9_9CRYP)

HSP 1 Score: 180 bits (457), Expect = 4.250e-49
Identity = 93/188 (49.47%), Postives = 127/188 (67.55%), Query Frame = 1
Query:    1 MERKEVVFVLGGPGSGKGTHCARIASEFGYTHLSTGDLLREEQKKETELATKIADCIRDGQLVPSSTMVALVKEAILNGDSDRFLLDGFPRSKDNLEAWFDAFSDNEVKVSFTLFLHCPKEELKKRLLERGETSGRADDNVETVLKRFDTFEKESLPVVEQLQLLGMVRKVSTVPARELVSHRVRRFF 564
            + + +VVFVLGGPG+GKGT CA I  E+G+ HLS GDLLR E++  +E A  I   I++G++VP    V L+  A+      +FL+DGFPRS DN + W+    D + +V+F LF  CP+EEL+KRLL+RGETSGR DDN+E++ KRF TF++ S+PVVE     GM+R VS+V   E V    +R F
Sbjct:  169 VPKPQVVFVLGGPGAGKGTQCANIVREYGWVHLSAGDLLRAERESGSENAAMINSFIKEGKIVPVEVTVKLLLAAMEKNPGKKFLIDGFPRSMDNKDGWYSVVGD-KAEVAFCLFYDCPEEELEKRLLKRGETSGRDDDNIESIKKRFRTFKETSMPVVEWFGSRGMLRTVSSVQTVEEVWAATKRVF 355          
BLAST of mRNA_S-firma_F_contig1054.751.1 vs. uniprot
Match: A0A7S2C1B9_9STRA (UMP-CMP kinase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C1B9_9STRA)

HSP 1 Score: 175 bits (443), Expect = 7.080e-49
Identity = 95/198 (47.98%), Postives = 130/198 (65.66%), Query Frame = 1
Query:    4 ERKEVVFVLGGPGSGKGTHCARIASEFGYTHLSTGDLLREEQKKETELATKIADCIRDGQLVPSSTMVALVKEAILNGDSDRFLLDGFPRSKDNLEAWFDAFSDNEVKVSFTLFLHCPKEELKKRLLERGETSGRADDNVETVLKRFDTFEKESLPVVEQLQLLGMVRKVSTVPARELVSHRVRRFFRGCRLVDHLER 597
            +R +VVFVLGGPGSGKGT CARI  EFG+ HLS GDLLR E+K  +EL   I   I+ G +VP+   V L+ EA+   ++  FL+DGFPR+ DNLE W    +    KV F L L CP+E +++RLL+RGETSGR+DDN+E++ KRF T+++ ++PVV+       VR+V +  A E V   VR     C + + LE+
Sbjct:   39 DRPKVVFVLGGPGSGKGTMCARIVEEFGFMHLSAGDLLRAERKSGSELGDMIEGHIQAGSIVPAEVTVRLLDEAMKKSEATCFLVDGFPRNADNLECWVKLMT--HCKVEFVLMLECPEEVMEQRLLKRGETSGRSDDNIESIRKRFKTYKESTMPVVQVFAKENKVREVVSDRAPEEVYADVRTAI--CEVTEPLEQ 232          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1054.751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4L5_ECTSI6.330e-21578.55NDK domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KI40_9PHAE5.210e-15178.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6V1RU54_HETAK7.330e-10652.87UMP-CMP kinase n=2 Tax=Heterosigma akashiwo TaxID=... [more]
A0A835YVW4_9STRA1.510e-10252.87UMP-CMP kinase n=1 Tax=Tribonema minus TaxID=30337... [more]
F6UHS2_CIOIN1.760e-5148.68UMP-CMP kinase n=1 Tax=Ciona intestinalis TaxID=77... [more]
H2ZHH9_CIOSA5.080e-5146.81UMP-CMP kinase n=1 Tax=Ciona savignyi TaxID=51511 ... [more]
UPI0009E5DDD41.990e-5045.65UMP-CMP kinase-like n=1 Tax=Orbicella faveolata Ta... [more]
W4G8P5_9STRA1.980e-4947.75UMP-CMP kinase n=6 Tax=Aphanomyces TaxID=100860 Re... [more]
A0A7S0M1V9_9CRYP4.250e-4949.47Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S2C1B9_9STRA7.080e-4947.98UMP-CMP kinase n=1 Tax=Florenciella parvula TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1054contigS-firma_F_contig1054:13163..16776 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7G4L5
Preferred nameRSP23
PFAMsADK,Dpy-30,IQ,NDK,Thioredoxin
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K00939,ko:K00940,ko:K13800,ko:K19868,ko:K20790
KEGG ReactionR00124,R00127,R00139,R00156,R00158,R00330,R00512,R00570,R00722,R01137,R01547,R01665,R01857,R02093,R02326,R02331,R03530,R11319,R11891,R11892,R11894,R11895
KEGG Pathwayko00230,ko00240,ko00730,ko00983,ko01100,ko01110,ko01130,ko04016,map00230,map00240,map00730,map00983,map01100,map01110,map01130,map04016
KEGG ModuleM00049,M00050,M00052,M00053
Evalue1.04e-215
EggNOG OGsCOG0105@1|root,COG0563@1|root,KOG0888@2759|Eukaryota,KOG3079@2759|Eukaryota
Ec32 ortholog descriptionNucleoside diphosphate kinase
Ec32 orthologEc-07_000140.1
EC2.7.4.14,2.7.4.3,2.7.4.6
Descriptioncytidylate kinase activity
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000,ko03036,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons8
Model size1209
Cds size1209
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1054.751.1prot_S-firma_F_contig1054.751.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1054 13163..16776 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.2426128-CDS-S-firma_F_contig1054:13162..132221622815590.2426128-CDS-S-firma_F_contig1054:13162..13222Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1054 13163..13222 +
1696949438.262101-CDS-S-firma_F_contig1054:13162..132221696949438.262101-CDS-S-firma_F_contig1054:13162..13222Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1054 13163..13222 +
1622815590.2571912-CDS-S-firma_F_contig1054:13788..139011622815590.2571912-CDS-S-firma_F_contig1054:13788..13901Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1054 13789..13901 +
1696949438.275567-CDS-S-firma_F_contig1054:13788..139011696949438.275567-CDS-S-firma_F_contig1054:13788..13901Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1054 13789..13901 +
1622815590.271222-CDS-S-firma_F_contig1054:14265..144191622815590.271222-CDS-S-firma_F_contig1054:14265..14419Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1054 14266..14419 +
1696949438.2854443-CDS-S-firma_F_contig1054:14265..144191696949438.2854443-CDS-S-firma_F_contig1054:14265..14419Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1054 14266..14419 +
1622815590.2831979-CDS-S-firma_F_contig1054:14803..149771622815590.2831979-CDS-S-firma_F_contig1054:14803..14977Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1054 14804..14977 +
1696949438.3001482-CDS-S-firma_F_contig1054:14803..149771696949438.3001482-CDS-S-firma_F_contig1054:14803..14977Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1054 14804..14977 +
1622815590.2972057-CDS-S-firma_F_contig1054:15229..153871622815590.2972057-CDS-S-firma_F_contig1054:15229..15387Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1054 15230..15387 +
1696949438.3123236-CDS-S-firma_F_contig1054:15229..153871696949438.3123236-CDS-S-firma_F_contig1054:15229..15387Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1054 15230..15387 +
1622815590.3207295-CDS-S-firma_F_contig1054:15594..157571622815590.3207295-CDS-S-firma_F_contig1054:15594..15757Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1054 15595..15757 +
1696949438.3245046-CDS-S-firma_F_contig1054:15594..157571696949438.3245046-CDS-S-firma_F_contig1054:15594..15757Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1054 15595..15757 +
1622815590.3344283-CDS-S-firma_F_contig1054:16093..161761622815590.3344283-CDS-S-firma_F_contig1054:16093..16176Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1054 16094..16176 +
1696949438.3340545-CDS-S-firma_F_contig1054:16093..161761696949438.3340545-CDS-S-firma_F_contig1054:16093..16176Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1054 16094..16176 +
1622815590.3452957-CDS-S-firma_F_contig1054:16472..167761622815590.3452957-CDS-S-firma_F_contig1054:16472..16776Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1054 16473..16776 +
1696949438.3433075-CDS-S-firma_F_contig1054:16472..167761696949438.3433075-CDS-S-firma_F_contig1054:16472..16776Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1054 16473..16776 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1054.751.1

>prot_S-firma_F_contig1054.751.1 ID=prot_S-firma_F_contig1054.751.1|Name=mRNA_S-firma_F_contig1054.751.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=403bp
MERKEVVFVLGGPGSGKGTHCARIASEFGYTHLSTGDLLREEQKKETELA
TKIADCIRDGQLVPSSTMVALVKEAILNGDSDRFLLDGFPRSKDNLEAWF
DAFSDNEVKVSFTLFLHCPKEELKKRLLERGETSGRADDNVETVLKRFDT
FEKESLPVVEQLQLLGMVRKVSTVPARELVSHRVRRFFRGCRLVDHLERT
LALIKPDAVGSGNAGDIIARAEKEGFVVVGKIDGRTWSREDAEVFYAEHK
DKPFFDTLVGFMSSGPIVQICLEKVNAIKAWRELTGPTNAADAKTAEPSS
IRALYGTDGTKNAVHGSDSFASALREVNFCFNSAAEGAAVAAARLDTGDE
MGQEEGSAVGGPKYGGNGYGSNGFATEEKTLALVKPGVSELHSGESHKKA
CM*
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mRNA from alignment at S-firma_F_contig1054:13163..16776+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1054.751.1 ID=mRNA_S-firma_F_contig1054.751.1|Name=mRNA_S-firma_F_contig1054.751.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3614bp|location=Sequence derived from alignment at S-firma_F_contig1054:13163..16776+ (Sphaerotrichia firma ET2_F female)
ATGGAGCGCAAAGAGGTCGTGTTTGTGCTTGGAGGGCCAGGTTCAGGGAA AGGCACTCACGTGAGCGTTCTTTGCGTGCGCTTCGGAACGCATGTTGTCC TGTTGTCATGAAAGCTCTGCCTCCTGTGCTTTCAGGCGATCAACAATTCT CTTTAGAGCTTCCTAAACGCATCCACCGGATTCGCGCGTCGTTCCTTCTT TTGTAAAGAAAAATGCCATGGCGCGCTGGAGTTCGGGGAACCAGCCAGTC ATGCAAATACCCCGGCTGTTGTACGTACGGGACGATCCTATGATACAACA AACAGTAGATTTCGTGTCGTAACAAATGAGAGGCCGCCTGTTCGAGAAAT CACAGCACATGCATCACTTGCCTCTGCCTCTTTACAGCACGTTGATGTTA GTTCGACATGCATTCATGGAAAAGAGAATTGTCTTCGTAGTCCTGGCAAT TCCATATTCCGATCTACGCACAACTTCCGAAAACCTTCAGAGGCAAGTCA TTGCATGAGAGAGAAACTCTCCGAAGCACCAGTGCACATAGAAGTCGTGT GAGATATACTGTGGTACTAAGCATGAATTCAACAAATTGACACCAACTCT TCTCTCGCGGCTGCGTTCATGCGAAGTGTGCCAGGATTGCCTCGGAGTTT GGTTACACCCACCTGAGCACTGGCGATCTCCTGAGAGAGGAGCAGAAGAA GGAGACTGAGCTGGCGACGAAGATCGCGGATTGCATCAGGTAAAGCCGCA CTTTTTCCACGTCTGGTTGATGAGCGTACTTTGACAGGATATGTAGTGAG GGAGCGGAGGATGTTCCGAAATGCGAAGGGAGAACCAGCACTCTGTCTGG TGCCACAGTACCACCTATATCTGGGACGGAACGCAGCCACGGGTGTTGGT TCCGGCTCGAATCCACAACGGATATGTATATCAAAGTGCCCGAGAACTCA TGTGAAGAGCTTGAAGTCGGCCCCCACTTCCTTCCCTCCGTGGATCACTA GCCGTTCGCAGAGGTGGTGCATCAGACGACCACCGTGAACGCGACACTCT CGTTTACCGTTATTCCGATCAAACCGTACTTTTCCCGTGGTCTTGCTGCT CAGAGATGGCCAGCTTGTGCCTTCCTCCACCATGGTTGCCCTGGTGAAAG AGGCTATCCTTAACGGTGACTCGGATCGATTTCTGTTGGACGGTTTTCCC CGAAGCAAGGACAACCTCGAGGCCTGGTTTGACGCCTTCTCGGACAATGA AGTGAAGGTGTGTATGGAGCTCACAGCTGTACTGCAAATCCGGGGTATCG CGAAAAGGCTACGGGCGGGACATATTTGTGCTACGGCAGTGTCCCCTCAA AATTGGACGTTGGTGGCATGTTGCAACCTCCCTCCTTTGAAACACCGACA CACTCATCGCCCGACCCGTTGTTGGCTCGAACGATTTCTGTTCTTTAGCC TGGCCGTTCAGAAACGGTTAGGCGAGAAAACGTATCGACCTCCGGGTGGG TTCGATATCCGACGCCTGAGTGTATGTTTCGCGGCCTCCACGAGCCGAGA TCGATTTTGGTGACAGAGGTACATCGTGCCGCTTCATCCACGTACTCGCT CGTGCGCAACGGCTGGCGCCCGTATCGTGGTGGGTGGGTAGGTTTCGTTC ACGCTGTTCCTGCACTGCCCGAAGGAGGAGCTCAAGAAACGCCTGCTGGA GAGGGGAGAGACTTCTGGCCGCGCCGACGACAACGTGGAGACCGTGCTGA AGCGTTTCGACACGTTCGAGAAAGAGTCACTGCCGGTCGTCGAGCAGCTC CAACTCCTGGGTATGGTGAGAGTCGACTCACGAAACCTCAGGTCACAAGG GGTTCCGCGTCGAACAAATACGAAACGCCCAATTTTTGACGCTGCGAGAC AACGCGCGGCAGCGTGCACAAACATACCCCCTCTCTGCTGGTGTGCGTTT CGGGCCTGGGCAAGAATGGCTTTGCAAGGACGCGAGCTTTGCGGTATACG GACGCCTCCGGCATGATCAGTGACCGATAAGAACACCTTTTCTTGCTTGT GTCCTACGTATGTGTAGGTAAGGAAAGTTTCAACAGTTCCTGCTCGGGAG CTGGTGTCCCATCGTGTCCGCCGTTTTTTCCGGGGGTGTCGGCTGGTCGA TCACCTTGAGAGGACCCTCGCCCTCATCAAGCCTGACGCTGTGGGGTCCG GGAACGCCGGTGACATTATCGCCAGGTATAGCCGGATGTTGTGCAAACTG TGTATGTCTGGAAGAAGGAGAATGTGCTTTGAGAGTTGGCAACGAACGGC AACAAATACGAAAATGCTGGAATGATGTCATAAAAGTATAGACGTGTACT TCGAACTATAGGCAGATCACTGAAAGGGTCGGACACCCAATAAACCAATG TCACGACGCGATGGACTGGATGTACCATCCAGGGCCGAGAAGGAAGGCTT CGTGGTCGTCGGAAAAATCGACGGTCGCACGTGGTCCAGAGAGGACGCCG AAGTCTTCTACGCGGAACACAAGGACAAGCCCTTCTTTGACACGCTGGTG GGCTTCATGAGCAGCGGTCCAATAGTTCAAATCTGCCTGGAGAAGGTGAG GAGGTTAAGGGCTTGGCTGCTTCGAGAAATTTCGCCGTTTTTTTATGTGG ATACTATGTCACAGCCTTCACCAGTTCAACAACGGTTGTTTGAGCTTGTC GCGGCGTAGATAGTCGTCACATCGATCGATCAACTGCGCGCGACCAAGGC AGAAAGGCTGCCAGCCAGATCCACAACGCTCACGCTTAGAATGGACATCT TTTCACGTCGGCATACAAAACAAACCATAAACTCCCACATTTCCAATTTC AGACGCCCAACATGTTCAGCATCCTTTCGTAATAGAGAGCGCCTGAGAAT GATAACCCTGCGTTGTGCGCGAACCCGAAAGGTGAACGCGATCAAGGCCT GGCGAGAGCTGACGGGGCCGACGAACGCCGCCGACGCCAAGACTGCGGAA CCTTCCAGTATCAGGTATTGCTGATCGAGTCTGCGTGTCAAGCATGAAGG GGGCTACTTGTACTGCTGAACCATGACTTACGCTCCTACCTTGGGGGAGA AAATGTAGACACCAATAACAAGGGAGGGGTAACTTTTACGACAGTTACCC CGGAACGACGTTTTTACAGGTTGGACGTACCGTAGACGGCTAACGCCTAG AAAATTTAAAAAGCATTGTCGGCCCCACAACACTGAACACAAAGCGTCCG AAAACCCTTCCAACACTTATGATGACGTTGAATGACGAATGGCGTTGAAT GGCTTTGAAGGGCTCTTTACGGAACGGACGGGACCAAGAACGCCGTTCAC GGCAGCGACAGCTTCGCGTCCGCCCTGCGAGAAGTCAACTTCTGCTTCAA CTCGGCGGCAGAGGGTGCGGCGGTGGCGGCGGCGAGACTGGACACCGGAG ACGAGATGGGGCAAGAGGAAGGGAGCGCAGTAGGAGGGCCGAAATATGGC GGCAATGGTTACGGTTCGAACGGTTTTGCCACGGAGGAGAAAACTCTCGC TCTTGTAAAGCCCGGCGTATCAGAGCTCCACTCAGGTGAGAGCCACAAAA AAGCGTGTATGTAG
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Coding sequence (CDS) from alignment at S-firma_F_contig1054:13163..16776+

>mRNA_S-firma_F_contig1054.751.1 ID=mRNA_S-firma_F_contig1054.751.1|Name=mRNA_S-firma_F_contig1054.751.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2418bp|location=Sequence derived from alignment at S-firma_F_contig1054:13163..16776+ (Sphaerotrichia firma ET2_F female)
ATGGAGCGCAAAGAGGTCGTGTTTGTGCTTGGAGGGCCAGGTTCAGGGAA
AGGCACTCACATGGAGCGCAAAGAGGTCGTGTTTGTGCTTGGAGGGCCAG
GTTCAGGGAAAGGCACTCACTGTGCCAGGATTGCCTCGGAGTTTGGTTAC
ACCCACCTGAGCACTGGCGATCTCCTGAGAGAGGAGCAGAAGAAGGAGAC
TGAGCTGGCGACGAAGATCGCGGATTGCATCAGTGTGCCAGGATTGCCTC
GGAGTTTGGTTACACCCACCTGAGCACTGGCGATCTCCTGAGAGAGGAGC
AGAAGAAGGAGACTGAGCTGGCGACGAAGATCGCGGATTGCATCAGAGAT
GGCCAGCTTGTGCCTTCCTCCACCATGGTTGCCCTGGTGAAAGAGGCTAT
CCTTAACGGTGACTCGGATCGATTTCTGTTGGACGGTTTTCCCCGAAGCA
AGGACAACCTCGAGGCCTGGTTTGACGCCTTCTCGGACAATGAAGTGAAG
AGATGGCCAGCTTGTGCCTTCCTCCACCATGGTTGCCCTGGTGAAAGAGG
CTATCCTTAACGGTGACTCGGATCGATTTCTGTTGGACGGTTTTCCCCGA
AGCAAGGACAACCTCGAGGCCTGGTTTGACGCCTTCTCGGACAATGAAGT
GAAGGTTTCGTTCACGCTGTTCCTGCACTGCCCGAAGGAGGAGCTCAAGA
AACGCCTGCTGGAGAGGGGAGAGACTTCTGGCCGCGCCGACGACAACGTG
GAGACCGTGCTGAAGCGTTTCGACACGTTCGAGAAAGAGTCACTGCCGGT
CGTCGAGCAGCTCCAACTCCTGGGTATGGTTTCGTTCACGCTGTTCCTGC
ACTGCCCGAAGGAGGAGCTCAAGAAACGCCTGCTGGAGAGGGGAGAGACT
TCTGGCCGCGCCGACGACAACGTGGAGACCGTGCTGAAGCGTTTCGACAC
GTTCGAGAAAGAGTCACTGCCGGTCGTCGAGCAGCTCCAACTCCTGGGTA
TGGTAAGGAAAGTTTCAACAGTTCCTGCTCGGGAGCTGGTGTCCCATCGT
GTCCGCCGTTTTTTCCGGGGGTGTCGGCTGGTCGATCACCTTGAGAGGAC
CCTCGCCCTCATCAAGCCTGACGCTGTGGGGTCCGGGAACGCCGGTGACA
TTATCGCCAGGTAAGGAAAGTTTCAACAGTTCCTGCTCGGGAGCTGGTGT
CCCATCGTGTCCGCCGTTTTTTCCGGGGGTGTCGGCTGGTCGATCACCTT
GAGAGGACCCTCGCCCTCATCAAGCCTGACGCTGTGGGGTCCGGGAACGC
CGGTGACATTATCGCCAGGGCCGAGAAGGAAGGCTTCGTGGTCGTCGGAA
AAATCGACGGTCGCACGTGGTCCAGAGAGGACGCCGAAGTCTTCTACGCG
GAACACAAGGACAAGCCCTTCTTTGACACGCTGGTGGGCTTCATGAGCAG
CGGTCCAATAGTTCAAATCTGCCTGGAGAAGGGCCGAGAAGGAAGGCTTC
GTGGTCGTCGGAAAAATCGACGGTCGCACGTGGTCCAGAGAGGACGCCGA
AGTCTTCTACGCGGAACACAAGGACAAGCCCTTCTTTGACACGCTGGTGG
GCTTCATGAGCAGCGGTCCAATAGTTCAAATCTGCCTGGAGAAGGTGAAC
GCGATCAAGGCCTGGCGAGAGCTGACGGGGCCGACGAACGCCGCCGACGC
CAAGACTGCGGAACCTTCCAGTATCAGGTGAACGCGATCAAGGCCTGGCG
AGAGCTGACGGGGCCGACGAACGCCGCCGACGCCAAGACTGCGGAACCTT
CCAGTATCAGGGCTCTTTACGGAACGGACGGGACCAAGAACGCCGTTCAC
GGCAGCGACAGCTTCGCGTCCGCCCTGCGAGAAGTCAACTTCTGCTTCAA
CTCGGCGGCAGAGGGTGCGGCGGTGGCGGCGGCGAGACTGGACACCGGAG
ACGAGATGGGGCAAGAGGAAGGGAGCGCAGTAGGAGGGCCGAAATATGGC
GGCAATGGTTACGGTTCGAACGGTTTTGCCACGGAGGAGAAAACTCTCGC
TCTTGTAAAGCCCGGCGTATCAGAGCTCCACTCAGGTGAGAGCCACAAAA
AAGCGTGTATGTAGGGCTCTTTACGGAACGGACGGGACCAAGAACGCCGT
TCACGGCAGCGACAGCTTCGCGTCCGCCCTGCGAGAAGTCAACTTCTGCT
TCAACTCGGCGGCAGAGGGTGCGGCGGTGGCGGCGGCGAGACTGGACACC
GGAGACGAGATGGGGCAAGAGGAAGGGAGCGCAGTAGGAGGGCCGAAATA
TGGCGGCAATGGTTACGGTTCGAACGGTTTTGCCACGGAGGAGAAAACTC
TCGCTCTTGTAAAGCCCGGCGTATCAGAGCTCCACTCAGGTGAGAGCCAC
AAAAAAGCGTGTATGTAG
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