mRNA_S-firma_F_contig10519.728.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10519.728.1 vs. uniprot
Match: D7FQB2_ECTSI (Similar to ATP binding / alanine-tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQB2_ECTSI) HSP 1 Score: 260 bits (664), Expect = 3.440e-84 Identity = 130/173 (75.14%), Postives = 145/173 (83.82%), Query Frame = 2
Query: 101 VYMLDTYKLVDEAVLLGVVEDEAQGTAVILDRTIFHPQGGGQPSDQGTITCGPCIFSVGMVRDVAGVIYHFGAMLGSPSWP-EVGWPVSLALDGPKRLRHAALHSAGHAVDKAVVGAVGAGVFSPLKGYHFDDSPYVEYRGVLPDGLTKDAFIEKLNTELDKLVMADMATVVE 616
+Y+ DTY + EA +LGVVED++QG+A+ILDRTIFHPQGGGQPSD+GTITCG C V VRDV GVIYH+G M G+P E G P SLALD KRLRHAALHSAGHAVDKAVVGAVGAGVFSPLKGYHFDDSPYVEYRG LP GL KDAFIEK N+ELDKLVMA+M T+V+
Sbjct: 1 MYLQDTYLMTSEATVLGVVEDDSQGSAIILDRTIFHPQGGGQPSDEGTITCGDCTVPVSKVRDVGGVIYHYGTMSGTPQPRLEAGRPASLALDSAKRLRHAALHSAGHAVDKAVVGAVGAGVFSPLKGYHFDDSPYVEYRGTLPAGLEKDAFIEKCNSELDKLVMANMETMVK 173
BLAST of mRNA_S-firma_F_contig10519.728.1 vs. uniprot
Match: A0A6H5JDI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDI3_9PHAE) HSP 1 Score: 150 bits (378), Expect = 3.370e-43 Identity = 76/96 (79.17%), Postives = 82/96 (85.42%), Query Frame = 2
Query: 338 WPEVGW---PVSLALDGPKRLRHAALHSAGHAVDKAVVGAVGAGVFSPLKGYHFDDSPYVEYRGVLPDGLTKDAFIEKLNTELDKLVMADMATVVE 616
+P + W PVSLALD KRLRHA LHSAGHAVDKAV GAVGAGVFSPLKGYHFDDSPYVEYRG LP GL KDAFIEK N+ELDKLV+A+M TVV+
Sbjct: 5 YPPLSWAGRPVSLALDSAKRLRHAVLHSAGHAVDKAVAGAVGAGVFSPLKGYHFDDSPYVEYRGTLPAGLEKDAFIEKCNSELDKLVVANMETVVK 100
BLAST of mRNA_S-firma_F_contig10519.728.1 vs. uniprot
Match: A0A2D9ITL3_9FLAO (AA_TRNA_LIGASE_II_ALA domain-containing protein n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A2D9ITL3_9FLAO) HSP 1 Score: 125 bits (313), Expect = 5.550e-32 Identity = 74/171 (43.27%), Postives = 104/171 (60.82%), Query Frame = 2
Query: 92 TQRVYMLDTYKLVDEAVLLGVVEDEAQGTAVILDRTIFHPQGGGQPSDQGTITCGPCIFSVGMVRDVA-GVIYHFGAMLGSPSWPEVGWPVSLALDGPKRLRHAALHSAGHAVDKAVVGAVGAGVFSPLKGYHFDDSPYVEYRGVLPDGLTKDAFIEKLNTELDKLVMADM 601
T+ +Y+ DTY EA ++ D+ G A++LD+TIF+PQGGGQPSD G I C +F V VR G++ H+G S W E G V L +D KRL HA +HSAGH +D AV ++G SP KG+HF + PYVEY G+L D ++I L ++++LV+ D+
Sbjct: 2 TELIYLQDTYLSTLEARAQELICDDF-GEALVLDKTIFYPQGGGQPSDSGEIVCDTFVFEVSKVRLTNDGLVMHYGEF-SSGGWVE-GLAVELKIDAVKRLVHAKVHSAGHLLDCAV-SSLGLNQLSPTKGFHFPEGPYVEYEGILEDS---SSWIAPLEKKINELVLQDL 165
BLAST of mRNA_S-firma_F_contig10519.728.1 vs. uniprot
Match: A0A835Z9X7_9STRA (Alanyl-tRNA editing protein AlaX-M-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9X7_9STRA) HSP 1 Score: 122 bits (307), Expect = 3.130e-31 Identity = 76/180 (42.22%), Postives = 102/180 (56.67%), Query Frame = 2
Query: 89 ATQRVYMLDTYKLVDEAVLLGVVEDEAQGTAVILDRTIFHPQGGGQPSDQGTITC-GPCIFSVGMVRDVAGVIYHFGAMLGSPSWPEVGWPVSLALDGPKRLRHAALHSAGHAVDKAVVGAVGAGVFSPLKGYHFDDSPYVEYRGVLPDGLTKDAFIEKLNTELDKLVMADMATVVETGQ 625
+T+R+Y+ DTY A ++ V +D AV+LDRT+FHPQGGGQP+D+GT+ F V V+ VI HFG + G V ++D +RL+ A LHSAGHA+D AV A G P KGYHF+D PYVEY G L + ++KLN EL L+ A + T V +
Sbjct: 3 STERLYLQDTYSHACSARVVEVRDD-----AVVLDRTVFHPQGGGQPTDRGTLKIHNEVAFVVANVKADGDVILHFGQHGEGDKKLQTGDEVEASIDLQRRLQLARLHSAGHALDAAVRNA-GFAALKPTKGYHFEDGPYVEYEGALSAD-DRATLVDKLNAELALLIEAAIETAVRQSE 175
BLAST of mRNA_S-firma_F_contig10519.728.1 vs. uniprot
Match: A0A7S1TVS7_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TVS7_9STRA) HSP 1 Score: 123 bits (309), Expect = 6.650e-31 Identity = 78/184 (42.39%), Postives = 107/184 (58.15%), Query Frame = 2
Query: 92 TQRVYMLDTYKLVDEAVLLGVV------EDEAQGTAVILDRTIFHPQGGGQPSDQGTITCGPCIFSVGMVRDVAGVIYHFGAMLG----SPSWPEVGWPVSLALDGPKRLRHAALHSAGHAVDKAVVGAVGAGVFSPLKGYHFDDSPYVEYRGVLPDGLTKDAFIEKLNTELDKLVMADMATVV 613
T+R+Y+LDTY +A L V +D+A AVILDRT+FH QGGGQP+D GTIT +F V VR ++HFG+ G +P+ G V L++D KR+ HA HSAGHA+D AV G + KGYHF D PYVEY G L + K+ ++ LN ++ +++ D+ T V
Sbjct: 28 TERLYLLDTYLFEADAAALSVEALEPNPKDDATH-AVILDRTVFHAQGGGQPADLGTITADGAVFEVTGVRSAGDAVHHFGSFRGGDGDAPAAFAAGAAVHLSVDEVKRVAHARCHSAGHALDVAVARIFGEDWVAG-KGYHFLDGPYVEYIGKLAPEM-KETIVDTLNEKIAEVLSEDIPTEV 208
BLAST of mRNA_S-firma_F_contig10519.728.1 vs. uniprot
Match: A0A2M7QBX6_9BACT (AA_TRNA_LIGASE_II_ALA domain-containing protein n=1 Tax=Candidatus Roizmanbacteria bacterium CG_4_10_14_0_8_um_filter_39_9 TaxID=1974829 RepID=A0A2M7QBX6_9BACT) HSP 1 Score: 119 bits (299), Expect = 8.180e-30 Identity = 71/167 (42.51%), Postives = 103/167 (61.68%), Query Frame = 2
Query: 89 ATQRVYMLDTYKLVDEAVLLGVVEDEAQGTAVILDRTIFHPQGGGQPSDQGTITCGPCIFSVGMVRDVAGVIYHFGAMLGSPSWPEVGWPVSLALDGPKRLRHAALHSAGHAVDKAVVGAVGAGVFSPLKGYHFDDSPYVEYRGVLPDGLTKDAFIEKLNTELDKLV 589
AT+ +YM D+YKL D A+ + +++ E TA+ILD+TIF+PQGGGQP D GTIT +FSV VR G +YH G + E G V+L +DG +R + H+AGH +D A+ +G + +P KGYHF D YVEY G++ D K+ K+ E+++L+
Sbjct: 4 ATELLYMDDSYKLQDSAIYIDIIQTEGGKTALILDQTIFYPQGGGQPYDLGTITQEGNVFSVEEVRFKDGNVYHIGKF--TQGVIEKGAQVTLHVDGERRKFNRRNHTAGHLIDVAIKN-LGLSL-TPAKGYHFPDGAYVEYIGLM-DEAQKEELKSKIEAEVNRLI 165
BLAST of mRNA_S-firma_F_contig10519.728.1 vs. uniprot
Match: A0A7S2WSC3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WSC3_9STRA) HSP 1 Score: 119 bits (298), Expect = 3.920e-29 Identity = 74/183 (40.44%), Postives = 106/183 (57.92%), Query Frame = 2
Query: 53 AAPKAQ-PPSLFPATQRVYMLDTYKLVDEAVLLGVVE-DEAQGTAVILDRTIFHPQGGGQPSDQGTITCGPCIFSVGMVRD--VAGVIYHFGAMLGSPSWPEVGWPVSLALDGPKRLRHAALHSAGHAVDKAVVGAVGAGVFSPLKGYHFDDSPYVEYRGVLPDGLTKDAFIEKLNTELDKLV 589
A P +Q PP T ++Y+ DTY+ AV++ V E+ VILD+T+FHPQGGGQP+D+G ++ F V MV++ G+++HFG+M E G V +D R + LHSAGHA+D A+ +G+ +P KGYHF D+PYVEY G L KD+ E+L EL ++
Sbjct: 34 AGPASQDPPPSGLGTNKLYLADTYRTETPAVVVEVEPVPESGDLKVILDKTVFHPQGGGQPADKGVLSFPGGEFRVSMVKEDRSTGLVFHFGSMGSGSGSLEAGTEVDARIDPEWRSVCSRLHSAGHAMDAAMTALAVSGL-TPTKGYHFPDAPYVEYAGTLA-AEEKDSLQERLTNELQSII 214
BLAST of mRNA_S-firma_F_contig10519.728.1 vs. uniprot
Match: A0A7S2G7E6_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2G7E6_9EUKA) HSP 1 Score: 118 bits (295), Expect = 5.340e-29 Identity = 80/196 (40.82%), Postives = 109/196 (55.61%), Query Frame = 2
Query: 50 AAAPKAQPPSLFPATQRVYMLDTYKLVDEAVLLGVVED-EAQGTAVILDRTIFHPQGGGQPSDQGTITC--GPCIFSVGMV-RDVAGVIYHFGAMLGSPSWP--EVGWPVSLALDGPKRLRHAALHSAGHAVDKAVVGAVGAGVFSPLKGYHFDDSPYVEYRGVLPDGLTKDAFIEKLNTELDKLVMADMATVVET 619
A+ ++P S P T+ +Y DTY A +L + D + G +V LDRT FHPQGGGQP+DQGTI+ G F+V MV +D AGV+ H G P P +VG V+ +D R ++A +HSAGH +D A+ A P KGYHF YVEY G L + +DA + KL +D+L+ + T V T
Sbjct: 6 ASVAASEPASNLPPTEALYQTDTYLFTASATVLAIGPDAKGTGWSVKLDRTCFHPQGGGQPADQGTISACEGGGTFAVSMVSKDKAGVVSHDG-----PEEPSLKVGDSVTCTVDEASRRKNARVHSAGHLIDVAMTNAKCN--LRPTKGYHFTPGSYVEYDGKL-EAAERDALLPKLQASMDELIGQALPTKVLT 193
BLAST of mRNA_S-firma_F_contig10519.728.1 vs. uniprot
Match: A0A2H0SAS6_9BACT (AA_TRNA_LIGASE_II_ALA domain-containing protein n=1 Tax=Candidatus Peregrinibacteria bacterium CG10_big_fil_rev_8_21_14_0_10_36_19 TaxID=1974784 RepID=A0A2H0SAS6_9BACT) HSP 1 Score: 115 bits (288), Expect = 2.900e-28 Identity = 70/171 (40.94%), Postives = 102/171 (59.65%), Query Frame = 2
Query: 92 TQRVYMLDTYKLVDEAVLLGVVEDEAQGTAVILDRTIFHPQGGGQPSDQGTITCGPCIFSVGMVR-DVAGVIYHFGAMLGSPSWPEVGWPVSLALDGPKRLRHAALHSAGHAVDKAVVGAVGAGVFSPLKGYHFDDSPYVEYRGVLPDGLTKDAFIEKLNTELDKLVMADM 601
T+ +Y+ DTY EA + + E +G A+ILD+TIF+PQGGGQP+D G IT +F+V VR D GV+YHFG P G V+L +D +R+ +A LHSAGH + +AV G+ P+KG+HF + PYVEY G L + +I ++ +++LV D+
Sbjct: 2 TKLIYLEDTYLFESEAEVKEIKNTE-KGLAIILDQTIFYPQGGGQPTDHGKITTENVVFNVADVRLDEDGVVYHFGNFQNGTIKP--GEKVTLKVDKERRINNAKLHSAGHLIAEAVKKLEIPGI-KPVKGFHFPEGPYVEYEGTLEN---PQEYIPEIEKTVNELVEEDI 165
BLAST of mRNA_S-firma_F_contig10519.728.1 vs. uniprot
Match: V4LWR5_EUTSA (AA_TRNA_LIGASE_II_ALA domain-containing protein n=4 Tax=Brassicaceae TaxID=3700 RepID=V4LWR5_EUTSA) HSP 1 Score: 115 bits (288), Expect = 4.620e-28 Identity = 72/175 (41.14%), Postives = 100/175 (57.14%), Query Frame = 2
Query: 83 FPATQRVYMLDTYKLVDEAVLLGVVEDEAQGTAVILDRTIFHPQGGGQPSDQGTI--TCGPCIFSVGMVRDVAGVIYHFGAMLGSPSWP----EVGWPVSLALDGPKRLRHAALHSAGHAVDKAVVGAVGAGVFSPLKGYHFDDSPYVEYRGVLPDGLTKDAFIEKLNTELDKLV 589
FP T+ VY +D + L +A L + + + TA+ILD T+FHPQGGGQPSD G I T FSV VR G++ H+G GS E G V L +D +R ++ LHSAGH +D + VG G P KGYHF D P+VEY+G+LP + + ++L E ++L+
Sbjct: 3 FPPTKLVYHVDMFNLQSQARFLSLFKAQDGRTALILDSTVFHPQGGGQPSDTGFIVFTGSDSKFSVQDVRSKDGIVLHYGVFEGSNPESGMNIEEGQEVHLIVDESRRKLNSRLHSAGHLLDLCMQ-KVGLGHLEPGKGYHFPDGPFVEYKGILPQDVLQ-VKQKELEAEANELI 175 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10519.728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10519.728.1 >prot_S-firma_F_contig10519.728.1 ID=prot_S-firma_F_contig10519.728.1|Name=mRNA_S-firma_F_contig10519.728.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=198bp MQEPQKAAAPKAQPPSLFPATQRVYMLDTYKLVDEAVLLGVVEDEAQGTAback to top mRNA from alignment at S-firma_F_contig10519:389..2480+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10519.728.1 ID=mRNA_S-firma_F_contig10519.728.1|Name=mRNA_S-firma_F_contig10519.728.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2092bp|location=Sequence derived from alignment at S-firma_F_contig10519:389..2480+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10519:389..2480+ >mRNA_S-firma_F_contig10519.728.1 ID=mRNA_S-firma_F_contig10519.728.1|Name=mRNA_S-firma_F_contig10519.728.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1188bp|location=Sequence derived from alignment at S-firma_F_contig10519:389..2480+ (Sphaerotrichia firma ET2_F female)back to top |