mRNA_S-firma_F_contig10504.711.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10504.711.1
Unique NamemRNA_S-firma_F_contig10504.711.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10504.711.1 vs. uniprot
Match: D7G6A7_ECTSI (Thioredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6A7_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 1.330e-60
Identity = 95/113 (84.07%), Postives = 102/113 (90.27%), Query Frame = 3 
Query:  234 STKNPEAAAASPKVTLYEEFSRYADRTSVAQEIIFEITSKEHFDDVVSRAAGADEHEGYEDAQGNWRVPHKLMMVQVHAGWCRVCKGLQPKLLKLIAKHPEVLCCKINKTHNE 572
            +  +   AA + KVTLYEEFSRYADR SVAQE+IFEITS EHF+DVVSRAAGADEHEGYEDAQGNWRVPHKLMMVQ+HAGWCRVCKGLQPKLLKLI KHPEVLCCKINK H+E
Sbjct:   12 AASSASGAADTAKVTLYEEFSRYADRRSVAQEVIFEITSAEHFEDVVSRAAGADEHEGYEDAQGNWRVPHKLMMVQIHAGWCRVCKGLQPKLLKLITKHPEVLCCKINKAHHE 124
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BLAST of mRNA_S-firma_F_contig10504.711.1 vs. uniprot
Match: A0A835Z3K6_9STRA (Thioredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3K6_9STRA)

HSP 1 Score: 119 bits (297), Expect = 2.710e-29
Identity = 55/99 (55.56%), Postives = 75/99 (75.76%), Query Frame = 3 
Query:  279 LYEEFSRYADRTSVAQEIIFEITSKEHFDDVVSRAAGADEHE-GYEDAQGNWRVPHKLMMVQVHAGWCRVCKGLQPKLLKLIAKHPEVLCCKINKTHNE 572
            +YEE S+YAD  +VA + + EITS EH D +++ AA  +  + GY D  GN R+PH+L+M+QVHA WCR C G++PKLLKL A+HPEVLCCK+NK ++E
Sbjct:    1 MYEESSKYADPHAVATDCVVEITSNEHLDRILATAAQVENPDAGYVDHHGNQRLPHRLIMIQVHANWCRACIGVRPKLLKLCARHPEVLCCKLNKGNHE 99
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BLAST of mRNA_S-firma_F_contig10504.711.1 vs. uniprot
Match: A0A7R9U8D8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8D8_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 3.610e-16
Identity = 54/139 (38.85%), Postives = 72/139 (51.80%), Query Frame = 3 
Query:  168 PRGGAHFRPRAVSRVLRMA---EDISTKNPEAAAASPKV--TLYEEFSRYADRTSVAQEIIFEITSKEHFDDVVSRAAGADEHEGYEDAQGNWRVPHKLMMVQVHAGWCRVCKGLQPKLLKLIAKHPEVLCCKINKTHN 569
            PR  A FR     R LR       +    P  A  + +     YEE S YAD T+ A E + ++TS+E FD ++S AAGA       +     + PHK++M+ VHA WCR CK L  + LK+   HPEVLC K+N   N
Sbjct:   32 PRRAAAFRSGVQRRSLRRTFADASVLASTPLRAQKAEEFEDVYYEECSFYADATACAMETLIDVTSQEQFDFIISHAAGA-------NPLSPDQKPHKMVMLMVHATWCRKCKYLMKQYLKVAKAHPEVLCLKLNLATN 163
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10504.711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G6A7_ECTSI1.330e-6084.07Thioredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A835Z3K6_9STRA2.710e-2955.56Thioredoxin n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A7R9U8D8_9STRA3.610e-1638.85Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10504contigS-firma_F_contig10504:1172..4094 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7G6A7
PFAMsTPR_16,Thioredoxin
Max annot lvl2759|Eukaryota
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
Evalue1.62e-63
EggNOG OGsKOG0908@1|root,KOG0908@2759|Eukaryota
Descriptionprotein-disulfide reductase activity
COG categoryS
BRITEko00000,ko00001,ko03110
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-10_001160.1
Exons4
Model size1006
Cds size570
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10504.711.1prot_S-firma_F_contig10504.711.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10504 1537..4023 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815586.5000064-UTR-S-firma_F_contig10504:1171..15361622815586.5000064-UTR-S-firma_F_contig10504:1171..1536Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10504 1172..1536 -
1696949435.7506406-UTR-S-firma_F_contig10504:1171..15361696949435.7506406-UTR-S-firma_F_contig10504:1171..1536Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10504 1172..1536 -
1622815586.566242-UTR-S-firma_F_contig10504:4023..40941622815586.566242-UTR-S-firma_F_contig10504:4023..4094Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10504 4024..4094 -
1696949435.8042488-UTR-S-firma_F_contig10504:4023..40941696949435.8042488-UTR-S-firma_F_contig10504:4023..4094Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10504 4024..4094 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815586.5144067-CDS-S-firma_F_contig10504:1536..18361622815586.5144067-CDS-S-firma_F_contig10504:1536..1836Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10504 1537..1836 -
1696949435.7681367-CDS-S-firma_F_contig10504:1536..18361696949435.7681367-CDS-S-firma_F_contig10504:1536..1836Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10504 1537..1836 -
1622815586.5292273-CDS-S-firma_F_contig10504:2304..23731622815586.5292273-CDS-S-firma_F_contig10504:2304..2373Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10504 2305..2373 -
1696949435.7765746-CDS-S-firma_F_contig10504:2304..23731696949435.7765746-CDS-S-firma_F_contig10504:2304..2373Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10504 2305..2373 -
1622815586.5422893-CDS-S-firma_F_contig10504:3638..37361622815586.5422893-CDS-S-firma_F_contig10504:3638..3736Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10504 3639..3736 -
1696949435.7849195-CDS-S-firma_F_contig10504:3638..37361696949435.7849195-CDS-S-firma_F_contig10504:3638..3736Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10504 3639..3736 -
1622815586.555016-CDS-S-firma_F_contig10504:3920..40231622815586.555016-CDS-S-firma_F_contig10504:3920..4023Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10504 3921..4023 -
1696949435.7946467-CDS-S-firma_F_contig10504:3920..40231696949435.7946467-CDS-S-firma_F_contig10504:3920..4023Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10504 3921..4023 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10504.711.1

>prot_S-firma_F_contig10504.711.1 ID=prot_S-firma_F_contig10504.711.1|Name=mRNA_S-firma_F_contig10504.711.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=190bp
MRCACLGLVLLQPGVYGFAPSLASPRSVSWAPPRGGAHFRPRAVSRVLRM
AEDISTKNPEAAAASPKVTLYEEFSRYADRTSVAQEIIFEITSKEHFDDV
VSRAAGADEHEGYEDAQGNWRVPHKLMMVQVHAGWCRVCKGLQPKLLKLI
AKHPEVLCCKINKTHNEASRYIRIANTSATLGKVVYSSM*
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mRNA from alignment at S-firma_F_contig10504:1172..4094-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10504.711.1 ID=mRNA_S-firma_F_contig10504.711.1|Name=mRNA_S-firma_F_contig10504.711.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2923bp|location=Sequence derived from alignment at S-firma_F_contig10504:1172..4094- (Sphaerotrichia firma ET2_F female)
CCCGGATTGCCCTCGCCAACGCTGCGTAGTATGGTATTCCTGGGTTGCAC
TCTTTTGCTGCTTCCACCACCATGAGGTGTGCATGCTTGGGGCTCGTTCT
CTTACAGCCAGGAGTCTACGGATTTGCTCCGTCGTTGGCGTCGCCACGTT
CTGTTTCATGGGCGCCACCACGAGGTAAGGGCGCGAGCATTTTTTTGTCT
TTGCCCGGGTGCACGGCGGTGTAGATGGTTAAGCAGTCAGTAGTTGGACA
GCCGTGGAGAGCCGACGTCGTGTGGGGTCAAAGTCTTGCTGGCTGCAATG
ACACAAGAATACGATCTTGATATCGTAGCTGCCTGGTGCTTAATACCTTC
GACAGCAGGTGGAGCGCATTTTCGACCAAGAGCCGTTTCTCGCGTCCTGC
GAATGGCAGAGGACATCAGCACCAAGAACCCCGAGGCTGCTGCGGCATCT
CCCAAGGTGGGCACCTCGCAGCCGCCGTGTCGTCTACCTGAACTTTAATA
AAACTCTCCGCGCAAGGGTACTTCAAGTTCAAATTGGAATTAATACGCTG
CCAATTTGAGTATCAATAGTGGTCGCAGCTGTGAGAGAAGGATTGTAGAT
TGTAGACGCTACACAGCAGCAGCAGTAGACTATATAGCCCTCTCTGCTCG
GGAGACTAGACTAGACTACTACCGACGGTACATTACGGGCTGGGGCCAAC
GCTTCTCTTTCAGACGTCGTGCTGCCCACGCGTAATAACCCTTTTAGTAC
TTGTACTGGAAACCGGTTTAGAGAAAAATGATGAGAAACCTAAAATCTGG
CGACGTTCTTCGACCTGATAAGCAATGTTAGTCTTTGGAACCCCGTATGT
AGGTAAAAAAACAAACAAAAAACGCCCTGGGGGCACCCCACGAAGAGTAT
ACTTGCCCTACTTGCCCTGCACACAGCTCCACAGCAGTGCTGGAGACACA
ACTGAGTTGTTGCGGGTATGTGACAATTCTCGGAAACAAAATCGCCGCGA
TTCGTGCTTCCGCGGTGCCCCCGCGTCGGGTTCGGCCGTTGAGCGCACAC
CACACACAGCGCTTCGCTGTCACTCTCGAGAATCACGGTCTGCTTAGCTC
AGAGCGAGTTGCGCCGCCTTCGGCGGTCTCCTGTGTGCTGTGAGGGCTGC
TTCGTGTGTTACACACGCATAGCTCAGCAGGGTTCGCGCCATGTCTCTAC
ATCGAGAATTTCTGTTGTCTGGTACGCTAACCAAGTTTGACTTGCGGACT
GCTTTTTTTCTCAAAATGGTTCGCCAAGTTTCACGTGCTTTTTAATACAT
TTTCTACGTTCGTCAGCCGTATAGGTGTGCTTTTTTTGTATTGTTTTTTT
CTCAAAATGAGCAGGGTCGCGGCAGATGGAGTGCACCCCCCTAAAGGTGC
TGGGTCGGGACCGTGACCGTTGGCCAATCAGCGTCGCGCAGAAATCTCGA
CAACTGCGGAGCGATAATTTTTTTTTTCAGAGGGCTAGCGTACTAAAAGG
GTTAACTGAGTTGATCATCTGCAATTGGGGCGTTTAGCGTGTTTGCACGC
TCTTGGCTGCGTGCGTATGACGCATGTAATTTGTACGCACCGAAGAGCCG
AAAAGCACGCCGTCCCGGGCAAACACTGCACCGCCGTGGACCGTGGCACA
GTTCACGTGTCCCACACTTGGTTTTATGCCTCTCGCTCTGTTTCAACTTG
ATTGCACACGCAAACTTGCAGGTTACTCTCTACGAAGAGTTCTCTAGGTA
CGCCGATCGAACTTCTGTCGCGCAAGAAATCATCTTTGAGGTGGGGCTTT
TCAACTGGTGTTTTCGGTCCGTTGGCCCGTGTACCCTGGACAGCAGTGTT
GATCGCAACTGACGGCGCCGAAGCACGTGCAGTTAGTCCTGAATTTACAA
CACCTGCTGGCAAGATATTTTACTCCCTTGACTTGGGTAGCCGATGACGT
TTTCAACCCGCTCAATCCTTTTGCATTATGCCTTCGTGTAATGAGAAAGA
AACACACCCACCGGGACCGGTGTTGACTTTTAGCTCGCGAGCTGATAGGA
TGCACAGGGAACACAATGTGGTGCAGACGTTTCTCTTAACCTATATATTA
TATCGCAACTCTCAGTCTAGGTGGTAAAAATTGAAGGATGTACACACCCA
CAGCAGTTGTTTTTTGGAGCAATACAAAGTAGGAGTATTCCTCAAGCGAG
GTCCTGGGAATACTGCATTTATGCTCTACCATCGAGGCTGCTCGTTTGCC
CTATACAGATTACATCGAAGGAGCACTTCGATGACGTGGTGTCTAGGGCA
GCAGGGGCGGACGAACATGAAGGGTACGAAGATGCTCAAGGAAATTGGCG
AGTTCCTCACAAGCTGATGATGGTCCAGGTGCATGCCGGCTGGTGCCGTG
TGTGCAAGGGTTTACAACCCAAGTTGTTGAAGCTAATCGCCAAGCACCCG
GAGGTGTTGTGCTGCAAGATCAACAAGACGCACAACGAGGCGAGTCGTTA
TATCCGAATCGCTAACACCTCCGCAACCTTGGGCAAGGTCGTGTATTCGT
CGATGTAGATTGCTCTGCGTTGCATCGCGCTTCCAATTTTATTTTCCTTT
TTCCACAAGAGACAGCGCGCCGTGTGGAAAGGAACACAAAAGGTACACGG
CCCCGAGCAAGAAGAGAAGAAAGGACGGACAGAAATTGAAAGATTGTTGA
AGAAAAAAATTTAGACAACGCACCGCATGAACTCCACGCGTACATACGAA
TTGTACTAGTCCGAACGCTGCTCAACAATTGCAAGGGCCCGCAGGAAGGC
AGCGTCGAGCCCGGAGCCGTTGCCCCGCGAGTTCCCGCTAGATCCTCCCG
CTAGATCCTCCCGTTACATCCCCAGCTACCACGTTGGTGCTACCCCCACT
ACTACAGACAGTAGTGCAATCAC
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Coding sequence (CDS) from alignment at S-firma_F_contig10504:1172..4094-

>mRNA_S-firma_F_contig10504.711.1 ID=mRNA_S-firma_F_contig10504.711.1|Name=mRNA_S-firma_F_contig10504.711.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1140bp|location=Sequence derived from alignment at S-firma_F_contig10504:1172..4094- (Sphaerotrichia firma ET2_F female)
ATGAGGTGTGCATGCTTGGGGCTCGTTCTCTTACAGCCAGGAGTCTACGG
ATTTGCTCCGTCGTTGGCGTCGCCACGTTCTGTTTCATGGGCGCCACCAC
GAGATGAGGTGTGCATGCTTGGGGCTCGTTCTCTTACAGCCAGGAGTCTA
CGGATTTGCTCCGTCGTTGGCGTCGCCACGTTCTGTTTCATGGGCGCCAC
CACGAGGTGGAGCGCATTTTCGACCAAGAGCCGTTTCTCGCGTCCTGCGA
ATGGCAGAGGACATCAGCACCAAGAACCCCGAGGCTGCTGCGGCATCTCC
CAAGGTGGAGCGCATTTTCGACCAAGAGCCGTTTCTCGCGTCCTGCGAAT
GGCAGAGGACATCAGCACCAAGAACCCCGAGGCTGCTGCGGCATCTCCCA
AGGTTACTCTCTACGAAGAGTTCTCTAGGTACGCCGATCGAACTTCTGTC
GCGCAAGAAATCATCTTTGAGGTTACTCTCTACGAAGAGTTCTCTAGGTA
CGCCGATCGAACTTCTGTCGCGCAAGAAATCATCTTTGAGATTACATCGA
AGGAGCACTTCGATGACGTGGTGTCTAGGGCAGCAGGGGCGGACGAACAT
GAAGGGTACGAAGATGCTCAAGGAAATTGGCGAGTTCCTCACAAGCTGAT
GATGGTCCAGGTGCATGCCGGCTGGTGCCGTGTGTGCAAGGGTTTACAAC
CCAAGTTGTTGAAGCTAATCGCCAAGCACCCGGAGGTGTTGTGCTGCAAG
ATCAACAAGACGCACAACGAGGCGAGTCGTTATATCCGAATCGCTAACAC
CTCCGCAACCTTGGGCAAGGTCGTGTATTCGTCGATGTAGATTACATCGA
AGGAGCACTTCGATGACGTGGTGTCTAGGGCAGCAGGGGCGGACGAACAT
GAAGGGTACGAAGATGCTCAAGGAAATTGGCGAGTTCCTCACAAGCTGAT
GATGGTCCAGGTGCATGCCGGCTGGTGCCGTGTGTGCAAGGGTTTACAAC
CCAAGTTGTTGAAGCTAATCGCCAAGCACCCGGAGGTGTTGTGCTGCAAG
ATCAACAAGACGCACAACGAGGCGAGTCGTTATATCCGAATCGCTAACAC
CTCCGCAACCTTGGGCAAGGTCGTGTATTCGTCGATGTAG
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