mRNA_S-firma_F_contig1001.73.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1001.73.1
Unique NamemRNA_S-firma_F_contig1001.73.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig1001.73.1 vs. uniprot
Match: A0A1U8B5U0_NELNU (Histone acetyltransferase n=2 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8B5U0_NELNU)

HSP 1 Score: 93.2 bits (230), Expect = 6.300e-21
Identity = 42/89 (47.19%), Postives = 55/89 (61.80%), Query Frame = 3
Query:   27 GEVFDNRETFLAVCRHNQYQFDTLRRAMHSTAMVLYHLHNPETPWCLPKCFFCGEGVFADKRSSCRSCVD*HVCKGCILKERT-HDHEL 290
             E+F+NR+TFL+ C+ N YQ+DTLRRA HST M+LYH HNP  P  +  C  C + + A +   C  C D  VC  C  KE   H+H+L
Sbjct:   35 NELFENRQTFLSFCQGNHYQYDTLRRAKHSTMMILYHFHNPAVPAVIATCSICYKDIEAGQGWHCEVCSDYDVCAVCYQKEVVDHNHKL 123          
BLAST of mRNA_S-firma_F_contig1001.73.1 vs. uniprot
Match: A0A7I8KEU3_SPIIN (Histone acetyltransferase n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8KEU3_SPIIN)

HSP 1 Score: 95.5 bits (236), Expect = 1.190e-20
Identity = 43/93 (46.24%), Postives = 55/93 (59.14%), Query Frame = 3
Query:   27 GEVFDNRETFLAVCRHNQYQFDTLRRAMHSTAMVLYHLHNPETPWCLPKCFFCGEGVFADKRSSCRSCVD*HVCKGCILKERTHDHELEPITQ 305
             E FD+R  FL +C+ N YQ+DTLRRA HST M+LYHLHNP  P  +  CF C E V A +   C +C D  +C  C  +E +  H  E + Q
Sbjct: 1228 SEFFDSRLAFLNLCQGNHYQYDTLRRAKHSTMMILYHLHNPTVPAFVSSCFHCHEDVEAGQGWHCETCPDYDLCNSCYQREGSTGHAHELVRQ 1320          
BLAST of mRNA_S-firma_F_contig1001.73.1 vs. uniprot
Match: S8C569_9LAMI (Histone acetyltransferase (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8C569_9LAMI)

HSP 1 Score: 91.3 bits (225), Expect = 1.650e-20
Identity = 40/88 (45.45%), Postives = 54/88 (61.36%), Query Frame = 3
Query:   33 VFDNRETFLAVCRHNQYQFDTLRRAMHSTAMVLYHLHNPETPWCLPKCFFCGEGVFADKRSSCRSCVD*HVCKGCILKE--RTHDHEL 290
            +FD R+ FL++C+ N YQ+DTLRRA HS+ MVLYHLHNP  P  + +C  C   + A +   C +C D  +C  C  K+  R H H L
Sbjct:    1 IFDTRQAFLSLCQGNHYQYDTLRRAKHSSMMVLYHLHNPSAPAFVAQCAVCHRDIEAGQGWHCGTCPDYDMCNACYQKDEGRNHPHSL 88          
BLAST of mRNA_S-firma_F_contig1001.73.1 vs. uniprot
Match: A0A7S2RCX7_9STRA (Histone acetyltransferase n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RCX7_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 2.240e-20
Identity = 42/97 (43.30%), Postives = 59/97 (60.82%), Query Frame = 3
Query:   15 PMR*GEVFDNRETFLAVCRHNQYQFDTLRRAMHSTAMVLYHLHNPETPWCLPKCFFCGEGVFADKRSSCRSCVD*HVCKGCILKERTHDHELEPITQ 305
            P+   + FD R+ FL++C+ N+YQ+D LRRA HS+ MVLYHLHNP+ P  +  C  C + +  D    C  C D  VC  C  K++ H H+LE + Q
Sbjct: 1793 PLMDNQFFDTRQQFLSLCQGNKYQYDQLRRAKHSSMMVLYHLHNPDEPGFVHSCNLCQQEIKEDSWWKCPVCEDFDVCNSCAAKKQ-HKHKLEQVHQ 1888          
BLAST of mRNA_S-firma_F_contig1001.73.1 vs. uniprot
Match: A0A453SNE6_AEGTS (Histone acetyltransferase n=3 Tax=Triticinae TaxID=1648030 RepID=A0A453SNE6_AEGTS)

HSP 1 Score: 92.0 bits (227), Expect = 2.710e-20
Identity = 42/89 (47.19%), Postives = 53/89 (59.55%), Query Frame = 3
Query:   30 EVFDNRETFLAVCRHNQYQFDTLRRAMHSTAMVLYHLHNPETPWCLPKCFFCGEGVFADKRSSCRSCVD*HVCKGCILKE--RTHDHEL 290
            E FD R+ FL++C+ N YQ+DTLRRA HS+ MVLYHLHNP  P  +  C  C   + A +   C  C D  VC GC  K+    H H+L
Sbjct:   64 EFFDTRQAFLSLCQGNHYQYDTLRRAKHSSMMVLYHLHNPTAPAFVTTCNICNNDIEAGQGWRCEECPDFDVCAGCYNKDGGANHRHKL 152          
BLAST of mRNA_S-firma_F_contig1001.73.1 vs. uniprot
Match: D8T4N9_SELML (Histone acetyltransferase n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8T4N9_SELML)

HSP 1 Score: 93.2 bits (230), Expect = 7.570e-20
Identity = 42/90 (46.67%), Postives = 52/90 (57.78%), Query Frame = 3
Query:   27 GEVFDNRETFLAVCRHNQYQFDTLRRAMHSTAMVLYHLHNPETPWCLPKCFFCGEGVFADKRSSCRSCVD*HVCKGCILKERT--HDHEL 290
             E FD R  FL +C+ N YQ+DTLRRA HS+ MVLYHLHNP  P  +  C  C   +   +   C +C +  VC GC  KE T  H H+L
Sbjct:  793 SEFFDTRHAFLTLCQGNHYQYDTLRRAKHSSMMVLYHLHNPMAPAFVVTCCICTHDIEPGQGWKCETCTEYDVCNGCYYKEETRKHPHKL 882          
BLAST of mRNA_S-firma_F_contig1001.73.1 vs. uniprot
Match: D8R0K0_SELML (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=6 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R0K0_SELML)

HSP 1 Score: 93.2 bits (230), Expect = 7.700e-20
Identity = 42/91 (46.15%), Postives = 54/91 (59.34%), Query Frame = 3
Query:   27 GEVFDNRETFLAVCRHNQYQFDTLRRAMHSTAMVLYHLHNPETPWCLPKCFFCGEGVFADKRSSCRSCVD*HVCKGCILKERT-HDHELEP 296
             E FD R+ FL++C+ N YQ DTLRRA HS+ MVLYHLHNP  P  +  C  C + +   K   C +C D  +C  C  KE   H H+L+P
Sbjct: 1088 SEFFDTRQAFLSLCQGNHYQHDTLRRAKHSSMMVLYHLHNPTAPAFVTSCNICNQDIETGKGWRCDTCADFDLCAACYHKELPKHPHKLKP 1178          
BLAST of mRNA_S-firma_F_contig1001.73.1 vs. uniprot
Match: A0A830HS00_9CHLO (Histone acetyltransferase n=3 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HS00_9CHLO)

HSP 1 Score: 93.2 bits (230), Expect = 7.710e-20
Identity = 45/96 (46.88%), Postives = 56/96 (58.33%), Query Frame = 3
Query:   15 PMR*GEVFDNRETFLAVCRHNQYQFDTLRRAMHSTAMVLYHLHNPETPWCLPKCFFCGEGVFADKRS-SCRSCVD*HVCKGCILKER-THDHELEP 296
            P    E FD R+ FL++C+ N YQFDTLRRA HS+ MVLYH+HNP+ P     C  CG  + AD R+  C  C D  VC+ C       H+H L P
Sbjct: 1272 PGEPSEFFDTRQNFLSLCQGNHYQFDTLRRAKHSSMMVLYHMHNPQAPGFAATCNVCGIEMQADARAYRCDECSDYDVCEACRRSPNFKHEHPLRP 1367          
BLAST of mRNA_S-firma_F_contig1001.73.1 vs. uniprot
Match: D8SJY6_SELML (Histone acetyltransferase n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SJY6_SELML)

HSP 1 Score: 93.2 bits (230), Expect = 7.720e-20
Identity = 42/90 (46.67%), Postives = 52/90 (57.78%), Query Frame = 3
Query:   27 GEVFDNRETFLAVCRHNQYQFDTLRRAMHSTAMVLYHLHNPETPWCLPKCFFCGEGVFADKRSSCRSCVD*HVCKGCILKERT--HDHEL 290
             E FD R  FL +C+ N YQ+DTLRRA HS+ MVLYHLHNP  P  +  C  C   +   +   C +C +  VC GC  KE T  H H+L
Sbjct: 1346 SEFFDTRHAFLTLCQGNHYQYDTLRRAKHSSMMVLYHLHNPMAPAFVVTCCICTHDIEPGQGWKCETCTEYDVCNGCYYKEETRKHPHKL 1435          
BLAST of mRNA_S-firma_F_contig1001.73.1 vs. uniprot
Match: A0A022RQU8_ERYGU (Histone acetyltransferase n=4 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022RQU8_ERYGU)

HSP 1 Score: 93.2 bits (230), Expect = 7.730e-20
Identity = 42/90 (46.67%), Postives = 54/90 (60.00%), Query Frame = 3
Query:   27 GEVFDNRETFLAVCRHNQYQFDTLRRAMHSTAMVLYHLHNPETPWCLPKCFFCGEGVFADKRSSCRSCVD*HVCKGCILKE--RTHDHEL 290
             E FD R+ FL++C+ N YQ+DTLRRA HS+ MVLYHLHNP  P  +  C  C   + A +   C +C D  VC  C  K+  R H H+L
Sbjct: 1395 SEFFDTRQAFLSLCQGNHYQYDTLRRAKHSSMMVLYHLHNPTAPAFVTTCIICHLDIEAGQGWRCETCPDYEVCNACYQKDGGRDHPHKL 1484          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1001.73.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1U8B5U0_NELNU6.300e-2147.19Histone acetyltransferase n=2 Tax=Nelumbo nucifera... [more]
A0A7I8KEU3_SPIIN1.190e-2046.24Histone acetyltransferase n=2 Tax=Spirodela interm... [more]
S8C569_9LAMI1.650e-2045.45Histone acetyltransferase (Fragment) n=1 Tax=Genli... [more]
A0A7S2RCX7_9STRA2.240e-2043.30Histone acetyltransferase n=1 Tax=labyrinthulid qu... [more]
A0A453SNE6_AEGTS2.710e-2047.19Histone acetyltransferase n=3 Tax=Triticinae TaxID... [more]
D8T4N9_SELML7.570e-2046.67Histone acetyltransferase n=1 Tax=Selaginella moel... [more]
D8R0K0_SELML7.700e-2046.15NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A830HS00_9CHLO7.710e-2046.88Histone acetyltransferase n=3 Tax=Pycnococcus prov... [more]
D8SJY6_SELML7.720e-2046.67Histone acetyltransferase n=3 Tax=Selaginella moel... [more]
A0A022RQU8_ERYGU7.730e-2046.67Histone acetyltransferase n=4 Tax=Erythranthe gutt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1001contigS-firma_F_contig1001:25423..26528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size331
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1001.73.1prot_S-firma_F_contig1001.73.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1001 25439..26528 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815524.721943-UTR-S-firma_F_contig1001:25422..254381622815524.721943-UTR-S-firma_F_contig1001:25422..25438Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1001 25423..25438 -
1696949387.286097-UTR-S-firma_F_contig1001:25422..254381696949387.286097-UTR-S-firma_F_contig1001:25422..25438Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1001 25423..25438 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815524.7322352-CDS-S-firma_F_contig1001:25438..255021622815524.7322352-CDS-S-firma_F_contig1001:25438..25502Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1001 25439..25502 -
1696949387.3019874-CDS-S-firma_F_contig1001:25438..255021696949387.3019874-CDS-S-firma_F_contig1001:25438..25502Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1001 25439..25502 -
1622815524.7419775-CDS-S-firma_F_contig1001:25786..259121622815524.7419775-CDS-S-firma_F_contig1001:25786..25912Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1001 25787..25912 -
1696949387.3341792-CDS-S-firma_F_contig1001:25786..259121696949387.3341792-CDS-S-firma_F_contig1001:25786..25912Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1001 25787..25912 -
1622815524.752016-CDS-S-firma_F_contig1001:26403..265281622815524.752016-CDS-S-firma_F_contig1001:26403..26528Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1001 26404..26528 -
1696949387.3513305-CDS-S-firma_F_contig1001:26403..265281696949387.3513305-CDS-S-firma_F_contig1001:26403..26528Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1001 26404..26528 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1001.73.1

>prot_S-firma_F_contig1001.73.1 ID=prot_S-firma_F_contig1001.73.1|Name=mRNA_S-firma_F_contig1001.73.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=105bp
MCPPSRCVRVKCSTTGRPSSPYADTTSTSSTRCEGPCIPRQWYCITCTTQ
KRRGACPSASSAAKAFSRTRGLAAAAASTDMSARDASSRKERTTTSSNRL
RRSR*
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mRNA from alignment at S-firma_F_contig1001:25423..26528-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1001.73.1 ID=mRNA_S-firma_F_contig1001.73.1|Name=mRNA_S-firma_F_contig1001.73.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1106bp|location=Sequence derived from alignment at S-firma_F_contig1001:25423..26528- (Sphaerotrichia firma ET2_F female)
ATGTGTCCGCCTTCCCGATGCGTTAGGGTGAAGTGTTCGACAACAGGGAG ACCTTCCTCGCCGTATGCCGACACAACCAGTACCAGTTCGACACGCTGCG AAGGGCCATGCATTCCACGGCAATGGTGAGTTCAACGTGTATGTCCATTC TAGGGGAGGTTATGAGCGCGCGATCGCACAAAAGCTTCCACGCTGCATCG AGGGGACCGGTAGTGCAGGTGGCCAAAACCCCGTGTTCGAGTGGAATGTT GACACCCCCTTGAGAGGAATGCTGAAACTTGCTGTCATACTTTATAGGCC ATCTCGGTGATATTGTGACAGTGAGTGTCTCGGGGCGGGTAGGAATCTTG TGCAATTCCAGCTTTTGCGTCTCTGCTTATTAGAAGCTTGGAAGGCGTAT CACAAGCACGGCGCGCAATCATGGATATATTGCGTTCATGAACTCAGTGC CACCGGCGGGAGACGTCTTGTATGCCCTACAGCACGTGATGATTCGTTCG GACTACTCGCTGTTTCTTCCCGATTTCCCGTTCTGCTGAGGATTCGCCGA CGATTTTGGCTTGGGTTGTCGTACCCCTGCCTACTCGAGACCTGCCGGTT CCCTCTCCTTCGCCAGGTACTGTATCACCTGCACAACCCAGAAACGCCGT GGTGCCTGCCCAAGTGCTTCTTCTGCGGCGAAGGCGTTTTCGCGGACAAG AGGTCTAGCTGCCGCAGCTGCGTCGACTGACATGTCTGCAAGGCAAGGCT GGAGTATCTGGCTTCTGTGCTTGGTTGTGGGTGGTAGGTAGGCATAGGCG TTGATGCTGTCGTCCCAAAAACGTGTCGAAATAATAAATCCGACTCATGC TACCTTTACAAGCAGAACCCATGCCCCAGTAATCAACGAATCACGGTGTG TTGCATCATCCGATGGCAACGAGTCAAACAACAAATAATGGCGAATAGAC CCCCCCCCCCCTTTCTTATTTCACTGTGTCGCGCTCGGCGCTATTCCCGT CTTCGTATCCTATTAATCACCCGCAGGGATGCATCCTCAAGGAAAGAACG CACGACCACGAGCTCGAACCGATTACGCAGGAGTAGATGAAGAAAAGAGA TACTGG
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Coding sequence (CDS) from alignment at S-firma_F_contig1001:25423..26528-

>mRNA_S-firma_F_contig1001.73.1 ID=mRNA_S-firma_F_contig1001.73.1|Name=mRNA_S-firma_F_contig1001.73.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=630bp|location=Sequence derived from alignment at S-firma_F_contig1001:25423..26528- (Sphaerotrichia firma ET2_F female)
ATGTGTCCGCCTTCCCGATGCGTTAGGGTGAAGTGTTCGACAACAGGGAG
ACCTTCCTCGCCGTATGCCGACACAACCAGTACCAGTTCGACACGCTGCG
AAGGGCCATGCATTCCACGGCAATGATGTGTCCGCCTTCCCGATGCGTTA
GGGTGAAGTGTTCGACAACAGGGAGACCTTCCTCGCCGTATGCCGACACA
ACCAGTACCAGTTCGACACGCTGCGAAGGGCCATGCATTCCACGGCAATG
GTACTGTATCACCTGCACAACCCAGAAACGCCGTGGTGCCTGCCCAAGTG
CTTCTTCTGCGGCGAAGGCGTTTTCGCGGACAAGAGGTCTAGCTGCCGCA
GCTGCGTCGACTGACATGTCTGCAAGGTACTGTATCACCTGCACAACCCA
GAAACGCCGTGGTGCCTGCCCAAGTGCTTCTTCTGCGGCGAAGGCGTTTT
CGCGGACAAGAGGTCTAGCTGCCGCAGCTGCGTCGACTGACATGTCTGCA
AGGGATGCATCCTCAAGGAAAGAACGCACGACCACGAGCTCGAACCGATT
ACGCAGGAGTAGATGAGGATGCATCCTCAAGGAAAGAACGCACGACCACG
AGCTCGAACCGATTACGCAGGAGTAGATGA
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