mRNA_S-firma_F_contig10008.70.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10008.70.1
Unique NamemRNA_S-firma_F_contig10008.70.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10008.70.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10008contigS-firma_F_contig10008:2707..3435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size729
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10008.70.1prot_S-firma_F_contig10008.70.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10008 2714..3121 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815524.6631985-UTR-S-firma_F_contig10008:2706..27131622815524.6631985-UTR-S-firma_F_contig10008:2706..2713Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10008 2707..2713 +
1696949387.244084-UTR-S-firma_F_contig10008:2706..27131696949387.244084-UTR-S-firma_F_contig10008:2706..2713Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10008 2707..2713 +
1622815524.6891332-UTR-S-firma_F_contig10008:3121..34351622815524.6891332-UTR-S-firma_F_contig10008:3121..3435Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10008 3122..3435 +
1696949387.2711532-UTR-S-firma_F_contig10008:3121..34351696949387.2711532-UTR-S-firma_F_contig10008:3121..3435Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10008 3122..3435 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815524.6767478-CDS-S-firma_F_contig10008:2713..31211622815524.6767478-CDS-S-firma_F_contig10008:2713..3121Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10008 2714..3121 +
1696949387.2620614-CDS-S-firma_F_contig10008:2713..31211696949387.2620614-CDS-S-firma_F_contig10008:2713..3121Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10008 2714..3121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10008.70.1

>prot_S-firma_F_contig10008.70.1 ID=prot_S-firma_F_contig10008.70.1|Name=mRNA_S-firma_F_contig10008.70.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=136bp
MGDGNGAGGAGATSAAMGETDMLMFMPMPRSAPSDGDVATAGDVGDVGDA
ALGAAGAGVETPLSALPLRSPSPAGEVPSLASSPMPSLSMRSMRCCRRGR
SSPDRRQEETREAVGGEKRPRTNTGKQATHQQQQS*
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mRNA from alignment at S-firma_F_contig10008:2707..3435+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10008.70.1 ID=mRNA_S-firma_F_contig10008.70.1|Name=mRNA_S-firma_F_contig10008.70.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=729bp|location=Sequence derived from alignment at S-firma_F_contig10008:2707..3435+ (Sphaerotrichia firma ET2_F female)
CGCGGGCATGGGTGATGGCAACGGTGCTGGTGGTGCCGGTGCTACCTCCG
CGGCCATGGGAGAGACGGACATGCTCATGTTCATGCCCATGCCCCGCTCT
GCCCCCTCAGACGGAGATGTCGCCACCGCCGGAGACGTCGGAGATGTCGG
AGATGCTGCGCTTGGCGCGGCCGGTGCCGGGGTGGAAACGCCGCTGTCGG
CGTTGCCGTTGCGGTCGCCGTCGCCGGCGGGAGAGGTTCCCTCGCTCGCT
TCTTCTCCAATGCCGAGCCTTTCCATGCGCTCGATGAGGTGCTGCAGGCG
AGGCCGGTCGTCGCCTGACCGAAGACAAGAGGAGACAAGAGAAGCCGTGG
GGGGTGAGAAAAGGCCGCGAACGAACACCGGCAAACAGGCGACACACCAA
CAACAGCAGTCGTAAGGCCGAAGGCGACAGGATGCCACTGATGCGGATGG
TGTGTCGCGAACATCGAAACGTAGGCTGCAGCAAACCACAACCTGGCAGA
GGCTGTCTCGTAGCAAGGTTGTTCAAGACTGAAGGTTACGCTCAACATGT
TGCCATGTCGCTGTTGACGCCAAGAGAGTGCCGGTAGAAAGCATGCACCG
TCGGCTCAATCCCGACAGAGGCAAACAGGAACCAAATCGATTGAAGTGGC
ATACCGTGGAAGGTGGGGCATTAAAGAACAAAAAAGAGGGGAAAAGCCCC
AGTGTTCGCCCCCTCCTGTGTGACCCCGG
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Coding sequence (CDS) from alignment at S-firma_F_contig10008:2707..3435+

>mRNA_S-firma_F_contig10008.70.1 ID=mRNA_S-firma_F_contig10008.70.1|Name=mRNA_S-firma_F_contig10008.70.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=816bp|location=Sequence derived from alignment at S-firma_F_contig10008:2707..3435+ (Sphaerotrichia firma ET2_F female)
ATGGGTGATGGCAACGGTGCTGGTGGTGCCGGTGCTACCTCCGCGGCCAT
GGGAGAGACGGACATGCTCATGTTCATGCCCATGCCCCGCTCTGCCCCCT
CAGACGGAGATGTCGCCACCGCCGGAGACGTCGGAGATGTCGGAGATGCT
GCGCTTGGCGCGGCCGGTGCCGGGGTGGAAACGCCGCTGTCGGCGTTGCC
GTTGCGGTCGCCGTCGCCGGCGGGAGAGGTTCCCTCGCTCGCTTCTTCTC
CAATGCCGAGCCTTTCCATGCGCTCGATGAGGTGCTGCAGGCGAGGCCGG
TCGTCGCCTGACCGAAGACAAGAGGAGACAAGAGAAGCCGTGGGGGGTGA
GAAAAGGCCGCGAACGAACACCGGCAAACAGGCGACACACCAACAACAGC
AGTCGTAAATGGGTGATGGCAACGGTGCTGGTGGTGCCGGTGCTACCTCC
GCGGCCATGGGAGAGACGGACATGCTCATGTTCATGCCCATGCCCCGCTC
TGCCCCCTCAGACGGAGATGTCGCCACCGCCGGAGACGTCGGAGATGTCG
GAGATGCTGCGCTTGGCGCGGCCGGTGCCGGGGTGGAAACGCCGCTGTCG
GCGTTGCCGTTGCGGTCGCCGTCGCCGGCGGGAGAGGTTCCCTCGCTCGC
TTCTTCTCCAATGCCGAGCCTTTCCATGCGCTCGATGAGGTGCTGCAGGC
GAGGCCGGTCGTCGCCTGACCGAAGACAAGAGGAGACAAGAGAAGCCGTG
GGGGGTGAGAAAAGGCCGCGAACGAACACCGGCAAACAGGCGACACACCA
ACAACAGCAGTCGTAA
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