mRNA_S-firma_F_contig10488.684.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10488.684.1 vs. uniprot
Match: D7FHZ2_ECTSI (C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ2_ECTSI) HSP 1 Score: 427 bits (1097), Expect = 3.030e-137 Identity = 291/588 (49.49%), Postives = 341/588 (57.99%), Query Frame = 1
Query: 1 VHRHKTLKDEDLIPDDTVDNGEQAEVEEVVTGQGLDLSYLWVVDAKNLGQRSRPSTSNAKRSSSTATKKQTTPTTDAQGRKQQTSEDERSGDGGDEETEKAQGSGSDSASPKQVG--------GETQGPTKSGGGESLVEPGPDGERSPPGGARDASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKGRLVPGSLLLTSLSVSDLPNTEKGVFSKQQDPYLVVKWGGQEARTSAKRDSGRDCSWSNEELALIVRTKKQLQEPVEIEVWNDNAGDKKPSPDVLIAKGPLPVKHLALPQPTAPASATDGNGSMKGGGRDNHTDDERGREGVVLNVDLMHGGGWGRKKKNASAGVITLTLEYIPPRRKQTXXXXXXXXXXXXRGRG------------------------EEGDQAATDTDDDGLSSIAGLSALSSLGKKNNLSVQELGAAMSQALEGFDVREELNKIGYAQGIINEGFGQRGAFADIQEKHLVGHPIYVPRGARKRILTLAELVRLQMKAEASGVTKAKEVSEADGPTDVRAFEGGYTVDGVVFFDTLAAMKLSLEEDKIKAELAIANE 1668
VHRHKTLKD+DL+PDD+VDNGEQ EVE+V+ G+GLDLSYLWVVDA + RS STS+ + SS TA K TT ++ + +++ +D SG+G E E QGSG+ +A + G G+ +GGGE+LV G+ + RKGRLVPGSL+LTS+S +DLP+TEKGVFSKQ DPYLV +WG QE RTSAKRDSG+ CSW EE+AL+VRTKKQLQEP+EIEVWNDNAGDKKPSPDVLI KG LPVKHLA P AP XXXXXXXXXXXX EGD+ AT+TDDD LSSIAGLSA S GK+N+LSVQELGA MSQ LEGF++REEL KI + QGIINEGFGQRGAFA IQE+HLVGHPIY PRGARKR+L LAEL+RLQM+AE VT ++++E P A E GYT DGV FFDTLAAM SLEED+ K EL NE
Sbjct: 130 VHRHKTLKDDDLVPDDSVDNGEQEEVEDVLGGEGLDLSYLWVVDAGKVLSRSNKSTSDTEGSSHTA-KGGTTTDSEQEAEQRRPGDDRVSGNGDAEGVENEQGSGAHAAKKEGDGRLPLDKASGKKSRDATNGGGENLVGSLELGDGGGENAQPSIAQVDTKAEKRARNTEKRGEAGGGRAGDNGDARPEQPQVKKRKGRLVPGSLVLTSVSAADLPDTEKGVFSKQ-DPYLVARWGEQEVRTSAKRDSGKACSWVKEEVALLVRTKKQLQEPIEIEVWNDNAGDKKPSPDVLIGKGSLPVKHLASADPAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQARREGDRTATETDDDALSSIAGLSAWSIQGKRNHLSVQELGAVMSQTLEGFNIREELGKIEFVQGIINEGFGQRGAFAYIQEEHLVGHPIYAPRGARKRLLALAELIRLQMRAEKEKVTAVEDIAEDGSPFWSPALERGYTTDGVAFFDTLAAMNYSLEEDRAKLELTKTNE 715 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10488.684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10488.684.1 >prot_S-firma_F_contig10488.684.1 ID=prot_S-firma_F_contig10488.684.1|Name=mRNA_S-firma_F_contig10488.684.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=556bp VHRHKTLKDEDLIPDDTVDNGEQAEVEEVVTGQGLDLSYLWVVDAKNLGQback to top mRNA from alignment at S-firma_F_contig10488:389..4794- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10488.684.1 ID=mRNA_S-firma_F_contig10488.684.1|Name=mRNA_S-firma_F_contig10488.684.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4406bp|location=Sequence derived from alignment at S-firma_F_contig10488:389..4794- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10488:389..4794- >mRNA_S-firma_F_contig10488.684.1 ID=mRNA_S-firma_F_contig10488.684.1|Name=mRNA_S-firma_F_contig10488.684.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=3336bp|location=Sequence derived from alignment at S-firma_F_contig10488:389..4794- (Sphaerotrichia firma ET2_F female)back to top |