mRNA_S-firma_F_contig1048.674.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1048.674.1
Unique NamemRNA_S-firma_F_contig1048.674.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig1048.674.1 vs. uniprot
Match: A0A6H5LIM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIM4_9PHAE)

HSP 1 Score: 330 bits (847), Expect = 1.010e-101
Identity = 163/288 (56.60%), Postives = 221/288 (76.74%), Query Frame = 3 
Query:  672 GDEPPSKKAKTANGASAKKPTPARQPRMSGDPKGKEIFIDNLPATATEEAVKELAADVGGEVISVRVMMSKDEEPKCTGLALVRFKEREFAAKALKSIPDQELDGNKLEARPSSNVNTLFIGSLSKNWTKEMVLKEFEEKLEGVVNFEVAPDNIGHNVNRGFGFCTFKDQEACKAAHSKHESIKLEILDTPVVLHWAESKGGREEDESGVYLSNVVEDVTSDFIRKELGRFGEIKEVVLGADNPNNKRKDFVIIKFIKPDSAAACIESINGTDMKGRKVTAVKAQAKR 1535
            GDEPP+KKAKTANGASA K   A +P++SGDP GKEIFIDNLP +ATEE VK++A + GGEV+S+RV+M+KDEEPKC GLALVRF+ R+ AA+AL+ +P+ +++ NKLEARPSSN NTLFIG+L+K WTKE VLKEFE++++G+VNFEV  D +  N+NRGFGF TFKD ++CKAAH+K+   KL IL+  V++ WAE++G +++DE GVY++ + E V    +RK  G +G I +VV+G      +RKDF II +   D+A  CIES++GTD   +K+    A++KR
Sbjct:  180 GDEPPTKKAKTANGASAAKKD-APKPKVSGDPSGKEIFIDNLPPSATEETVKKVAEEEGGEVVSMRVIMTKDEEPKCAGLALVRFQNRDHAARALERLPETKMESNKLEARPSSNANTLFIGNLNKTWTKETVLKEFEKEVDGIVNFEVTMDALNKNLNRGFGFATFKDVDSCKAAHTKYYKDKLTILENKVLIDWAETRGNKQDDERGVYITGLDEKVDEAALRKHFGSYGTIVKVVVGNQVGTAQRKDFAIINYSTADAAKTCIESMHGTDFMDKKLEVTMAKSKR 466
[Close]
BLAST of mRNA_S-firma_F_contig1048.674.1 vs. uniprot
Match: D7FTF9_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTF9_ECTSI)

HSP 1 Score: 310 bits (794), Expect = 6.730e-95
Identity = 165/328 (50.30%), Postives = 224/328 (68.29%), Query Frame = 3 
Query:  672 GDEPPSKKAKTANGASAKKPTPARQPRMSGDPKGKEIFIDNLPATATEEAVKELAADVGGEVISVRVMMSKDEEPKCTGLALVRFKEREFAAKALKSIPDQELDGNKLEARPSSNVNTLFIGSLSKNWTK----------------------------EMVLKEFEEKLEGVVNFEVAPDNIGHNVNRGFGFCTFKDQEACKAAHSKHESIKLEILDTPVVLHWAESKGGREEDESGVYLSNVVEDVTSDFIRKELGRFGEIKEVVLGADNPNNKRKDFVIIKFIKPDSAAACIESINGTDMKG---------RKVTAVKAQAKRRRE 1544
            GDEPP+KKAKTANGASA K   A +P++SGDP GKEIFIDNLP +ATEE VK++A + GGEV+S+RVMM+KDEEPKC GLALVRF+ R+ AA+AL+ +P+ +++ NKLEAR SSN NTLFIG+L+K WTK                            E VLKEFE++++G+VNFEV  D +  N+NRGFGF TFKD ++CKAAH+K+   KL IL+  V++ WAE++G +++DE GVY++ + E V    +RK  G +G I +VV+G      +RKDF II +   ++A  CIES++GTD  G         RK+    A++KR+R+
Sbjct:  217 GDEPPTKKAKTANGASAAKKD-APKPKVSGDPSGKEIFIDNLPPSATEETVKKVAEEQGGEVVSMRVMMTKDEEPKCAGLALVRFQNRDHAARALERLPEIKMESNKLEARSSSNANTLFIGNLNKTWTKXXXXXXXXXXXXXXXXXXXXXXXXXXKKETVLKEFEKEVDGIVNFEVTMDALNKNLNRGFGFATFKDVDSCKAAHAKYYKDKLTILENKVLIDWAETRGNKQDDERGVYITGLDEKVDEAGLRKHFGSYGTIVKVVVGNQVGTAQRKDFAIINYSAAEAAKTCIESMHGTDFMGKLTVTSPAGRKLEVTMAKSKRKRD 543
[Close]
BLAST of mRNA_S-firma_F_contig1048.674.1 vs. uniprot
Match: A0A388JQ19_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JQ19_CHABU)

HSP 1 Score: 123 bits (308), Expect = 2.700e-26
Identity = 77/267 (28.84%), Postives = 134/267 (50.19%), Query Frame = 3 
Query:  735 PARQPRMSGDP-----KGKEIFIDNLPATATEEAVKELAADVGGEVISVRVMMSKDEEPKCTGLALVRFKEREFAAKALKSIPDQELDGNKLEARPSSNVNTLFIGSLSKNWTKEMVLKEFEEKLEGVVNFEVAPDNIGHNVNRGFGFCTFKDQEACKAAHSKHESIKLEILDTPVVLHWAESKGGREEDESG------VYLSNVVEDVTSDFIRKELGRFGEIKEVVLGADNPNNKRKDFVIIKFIKPDSAAACIESINGTDMKGR 1502
            PA +  +S DP      G E+F+  +    +++ V+E     G EV  VR+++ + E  +C G   V F  +E A KA++++ + E  G K+   PS + + LFIG++ K WTKE +LK   ++  G+ + ++  D    + NRGF F  + +  A + A          +      +++AE++   E D +       VY+ N+ E VT D++RK   + GEI +++L    P   ++DF  I F +  SA A I+     ++ GR
Sbjct:  119 PATKKEVSKDPLDRPPHGSEVFLGGIGRDVSDDEVREFCLPCG-EVYEVRLVVDR-ETGQCKGYGFVTFMNKESAQKAIETLNETEFKGKKIRVTPSQSKHRLFIGNIPKLWTKEELLKALSDESAGIESVDLLQDPSNPHKNRGFAFVEYYNHAAAEQARRVLSKQSFLLGGRTPTVNYAENR--TEPDAAAMAQVKVVYVRNLPESVTEDYLRKLFEKHGEITKIILPIPKPGQPKRDFGFIHFAERSSAVAAIDKDEKYEVDGR 381
[Close]
BLAST of mRNA_S-firma_F_contig1048.674.1 vs. uniprot
Match: UPI001CC693B8 (heterogeneous nuclear ribonucleoprotein R-like isoform X1 n=2 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC693B8)

HSP 1 Score: 114 bits (284), Expect = 8.080e-23
Identity = 86/272 (31.62%), Postives = 135/272 (49.63%), Query Frame = 3 
Query:  777 EIFIDNLPATATEEAVKELAADVGGEVISVRVMMSKDEEPKCTGLALVRFKEREFAAKALKSIPDQELDGNKLEARPSSNVNTLFIGSLSKNWTKEMVLKEFEEKLEGVVNFE---VAPDNIGHNVNRGFGFCTFKDQ----EACK------AAHSKHESIKLEILDTPVVLHWAESKGGREEDESGVYLSNVVEDVTSDFIRKELGRFGEIKEVVLGADNPNNKRKDFVIIKFIKPDSAAACIESINGTDMK-GRKVTAVKAQAKRRRESG 1550
            E+F+  L   ATEE ++++   VG EV  VR+MM+     K  G A +RF   E A +A+  +    ++G +    PS + +TLF+G++ K WTKE  LKE +  L GV +FE   +  D+    +NRGF F  F  +    +ACK             + K+   DT     + E           +++  +      D +R+ L ++G+I++V L  + P  KR DF  + F   DSA AC+E IN T++  G K   V+A+  R R+ G
Sbjct:  163 EVFVGGLDRDATEEDLRKVFIQVG-EVTEVRLMMNPMTH-KNKGFAFIRFATVEQARRAINELKHPTVNGKQCGVSPSQDSDTLFVGNICKTWTKE-ALKE-KLSLYGVDSFEDLTLVEDSKNEGMNRGFAFLDFPSRADALDACKRLQRMDVVFGTDRTAKVAFADT-----FIEPDDEIMSQVKTIFIDGLPPAWDEDRVREPLKKYGKIEKVELARNMPAAKRTDFGFVTFDTHDSAVACVEGINNTELHDGDKKVKVRARLSRPRQRG 425
[Close]
BLAST of mRNA_S-firma_F_contig1048.674.1 vs. uniprot
Match: A0A8J5LX52_ZINOF (Uncharacterized protein n=7 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5LX52_ZINOF)

HSP 1 Score: 112 bits (279), Expect = 3.530e-22
Identity = 74/244 (30.33%), Postives = 116/244 (47.54%), Query Frame = 3 
Query:  777 EIFIDNLPATATEEAVKELAADVGGEVISVRVMMSKDEEPKCTGLALVRFKEREFAAKALKSIPDQELDGNKLEARPSSNVNTLFIGSLSKNWTKEMVLKEFEE-KLEGVVNFEVAPDNIGHNVNRGFGFCTFKDQEACKAAHSKHESIKLEILDTPVVLHWAESKGGREEDE----------SGVYLSNVVEDVTSDFIRKELGRFGEIKEVVLGADNPNNKRKDFVIIKFIKPDSAAACIES 1475
            EIFI  L   A EE +K++   VG E++ VR+MM   +  K  G A +R+K+   A KA+   P  E+ G    A      +T+++GS+ K+W KE V+K  ++  +E +    V PD    + NRGF F   +       A+ K +   +      + + WAE      E+E            VY+  +        +R+  G+FGEI+ +V   D    KRKDF  + F   ++A +CIES
Sbjct:  336 EIFIGGLSRDAKEEDLKKVFGKVG-EIVEVRLMMD-GQTRKNKGYAFLRYKDPAHAKKAVSEFPRVEICGKLCGAAALEGNDTIYLGSIDKDWKKEDVMKILQDIGIEKIDTVTVMPDPHNADANRGFAFLELETNRDAHIAYRKLQKKDVFGKGRNISVSWAEPLNDPNEEELKKVSLSFLVKSVYVEGIPSSWNESKLRELFGKFGEIERIVHSRDIHTAKRKDFAFVNFTVREAALSCIES 577
[Close]
BLAST of mRNA_S-firma_F_contig1048.674.1 vs. uniprot
Match: A0A2I0WI65_9ASPA (Polyadenylate-binding protein 2 n=3 Tax=Epidendroideae TaxID=158332 RepID=A0A2I0WI65_9ASPA)

HSP 1 Score: 109 bits (272), Expect = 8.670e-22
Identity = 75/267 (28.09%), Postives = 128/267 (47.94%), Query Frame = 3 
Query:  765 PKGKEIFIDNLPATATEEAVKELAADVGGEVISVRVMMSKDEEPKCTGLALVRFKEREFAAKALKSIPDQELDGNKLEARPSSNVNTLFIGSLSKNWTKEMVLKEFEEKLEGVVNFEVAPDNIGHNVNRGFGFCTFKDQEACKAAHSKHESIKLEILDTPVVLHWAESKGGREEDESG----VYLSNVVEDVTSDFIRKELGRFGEIKEVVLGADNPNNKRKDFVIIKFIKPDSAAACIESINGTDMKGR--KVTAVKAQAKRRRES 1547
            P G E+F+  LP   T+E +++L    G E+  VR++  KD++ +  G A + F  ++ A  A++ I D++  G  L    S   + LFIG++ K+  +E + +  EE   GV N E   D    + NRGF F  + +      A  K      +I  +   + WA+ K   +   +     +Y+ N+ E VTS+ +++   R GEI +VVL       KR DF  + F +  SA   ++     ++ G   +V+  K Q  ++ ES
Sbjct:  109 PHGSEVFVGGLPRDVTDEELRDLCESFG-EIYEVRLVKDKDKK-ESKGFAFIVFTTKDAAQMAVEEIQDKDFKGRTLRCSLSQVKHRLFIGNVPKSLAEEELKRILEETGPGVENIECFKDPQNPSRNRGFVFVEYYNNACADYARQKMSRSNFKIDGSTPTVSWADPKNSADASAAAQVKAIYVKNLPESVTSEKLKENFERHGEITKVVLPPAKAGQKR-DFGFVHFAERSSALKAVKGTEKYEIDGHTIEVSLAKPQTDKKSES 372
[Close]
BLAST of mRNA_S-firma_F_contig1048.674.1 vs. uniprot
Match: UPI001C4EDC8E (heterogeneous nuclear ribonucleoprotein Q-like n=1 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C4EDC8E)

HSP 1 Score: 109 bits (273), Expect = 1.860e-21
Identity = 85/272 (31.25%), Postives = 135/272 (49.63%), Query Frame = 3 
Query:  777 EIFIDNLPATATEEAVKELAADVGGEVISVRVMMSKDEEPKCTGLALVRFKEREFAAKALKSIPDQELDGNKLEARPSSNVNTLFIGSLSKNWTKEMVLKEFEEKLEGVVNFE---VAPDNIGHNVNRGFGFCTFKDQ----EACKAAHSKH------ESIKLEILDTPVVLHWAESKGGREEDESGVYLSNVVEDVTSDFIRKELGRFGEIKEVVLGADNPNNKRKDFVIIKFIKPDSAAACIESINGTDMK-GRKVTAVKAQAKRRRESG 1550
            E+FI  L   ATE+ ++++ + VG EV  VR+M +     K  G A +RF   E A +A+  +    ++G +    PS + +TLF+G++ K WTKE  LKE +  L GV NFE   +  D     +NRGF F  F  +    +ACK    +        + K+   DT     + E           +++  +      D +R+ L ++G+I++V L  + P  KR DF  + F   +SA AC+E IN T++  G K   V+A+  R R+ G
Sbjct:  158 EVFIGGLDRDATEDDLRKVFSQVG-EVTEVRLMKNPMTH-KNKGFAFLRFATVEQARRAITELKHPTVNGKQCGVSPSQDSDTLFLGNICKMWTKE-ALKE-KLALYGVDNFEDLTLVEDTKNEGMNRGFAFLDFPSRADALDACKRLQRRDVVFGTDRTAKVAFADT-----FIEPDDEIMSQVKTIFVDGLPPTWDEDRVREHLKKYGKIEKVELARNMPAAKRTDFGFVTFDTHESAVACVEDINNTELHDGDKKVKVRARLSRPRQRG 420
[Close]
BLAST of mRNA_S-firma_F_contig1048.674.1 vs. uniprot
Match: A0A1D1YM63_9ARAE (Heterogeneous nuclear ribonucleoprotein Q (Fragment) n=2 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1YM63_9ARAE)

HSP 1 Score: 108 bits (271), Expect = 2.320e-21
Identity = 80/265 (30.19%), Postives = 133/265 (50.19%), Query Frame = 3 
Query:  777 EIFIDNLPATATEEAVKELAADVGGEVISVRVMMSKDEEPKCTGLALVRFKEREFAAKALKSIPDQELDGNKLEARPSSNVNTLFIGSLSKNWTKEMVLKEFEEK-LEGVVNFEVAPDNIGHNVNRGFGFCTFKDQ-EACKAAHSKHESIKLEILDTPVVLHWAES----KGGREEDESGVYLSNVVEDVTSDFIRKELGRFGEIKEVVLGADNPNNKRKDFVIIKFIKPDSAAACIESINGTDM-KGRKVTAVKAQAKRRRESG 1550
            E+F+  L   ATEE +K++  +VG EV  VR +M   +  K  G A +RF   E A +A+  + +  ++G +    PS + +TLF+G++SK WTKE +  + ++  +E + +  +  D+     NRGF F  F  + EA  A     +   L  +D    + +AES         +    V++  +      + +R+ L  FG+I+ V L  + P+ +RKDF  + F   DSA  C E IN  D+ +G K   V+A+  R  + G
Sbjct:   23 EVFVGGLDNDATEEDLKKVFTEVG-EVKEVR-LMKNPQTKKNKGFAFLRFATVEQAKRAVAELKNPVINGKQCGVSPSLDNDTLFVGNISKTWTKEHLKDKLKQYGVENIEDLTLVEDSNNEGNNRGFAFLEFSSRKEAMDAFRRLRKRDVLFGVDRNAKVSFAESFILPNDEIMKQVKTVFVDGLPVAWDEERVRESLKEFGQIERVELARNMPSARRKDFGFVTFDTHDSAVKCSEGINNADLGEGDKKVKVRARLSRPLQKG 285
[Close]
BLAST of mRNA_S-firma_F_contig1048.674.1 vs. uniprot
Match: W1P4L8_AMBTC (Uncharacterized protein n=2 Tax=Amborella trichopoda TaxID=13333 RepID=W1P4L8_AMBTC)

HSP 1 Score: 108 bits (270), Expect = 4.630e-21
Identity = 70/249 (28.11%), Postives = 125/249 (50.20%), Query Frame = 3 
Query:  768 KGKEIFIDNLPATATEEAVKELAADVGGEVISVRVMMSKDEEPKCTGLALVRFKEREFAAKALKSIPDQELDGNKLEARPSSNVNTLFIGSLSKNWTKEMVLKEFEEK-LEGVVNFEVAPDNIGHNVNRGFGFCTFKDQEACKAAHSKHESIKLEILDTPVVLHWAESKGGREEDES------GVYLSNVVEDVTSDFIRKELGRFGEIKEVVLGADNPNNKRKDFVIIKFIKPDSAAACIESINGTDM 1493
            K +EIF+  L   A E+ +K+    +G EV+ VR++ +     K  G A V+F  +E A++A+  + +  + G +    PS + +TLF+G++   WTKE + K+  E  ++GV    +  D     +++GF F  F        A+ + +   +           A ++  RE D+        V++  +      D +R+++  +GEI+ VVL  + P  KR+DF  + F   DSA ACIE++N T++
Sbjct:  252 KEQEIFVGGLDKDAVEDDLKKAFEKIG-EVVEVRLLKNHITN-KNKGFAFVKFATKEQASRAVSELKNPVIRGKRCGVAPSEDNDTLFLGNICNTWTKEAIKKKLMEYGVDGVETITLVADPQHEGLSKGFAFVEFSCHMDAMNAYKRLQQPDVIFGHPERTAKVAFAEPLREPDQEVMAQVKSVFVDGLPPHWDEDRVREQMKYYGEIERVVLARNMPTAKRRDFGFVNFTTHDSAVACIEALNSTEL 498
[Close]
BLAST of mRNA_S-firma_F_contig1048.674.1 vs. uniprot
Match: A0A8K0MH84_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0MH84_9ROSA)

HSP 1 Score: 104 bits (259), Expect = 1.060e-19
Identity = 68/245 (27.76%), Postives = 126/245 (51.43%), Query Frame = 3 
Query:  777 EIFIDNLPATATEEAVKELAADVGGEVISVRVMMSKDEEPKCTGLALVRFKEREFAAKALKSIPDQELDGNKLEARPSSNVNTLFIGSLSKNWTKEMVLKEFEEK-LEGVVNFEVAPDNIGHNVNRGFGFCTFKDQEACKAAHSKHESIKLEI-LDTPVVLHWAES--KGGRE--EDESGVYLSNVVEDVTSDFIRKELGRFGEIKEVVLGADNPNNKRKDFVIIKFIKPDSAAACIESINGTDM 1493
            E+F+  L   ATE+ +++    VG EV  VR+MM+   + K  G A +RF   E A +A+  + +  ++G +    PS + +TLF+G++SK WT+  + ++ +   ++ V +  +  D+    +NRGF F  F  +     A  + +   +   +D P  + +A+S    G E       V++  +      D + + L ++GEI+++ L  + P+ KRKDF  + F   D+A  C +SIN  ++
Sbjct:  219 EVFVGGLDKDATEDDLRKAFTAVG-EVTEVRLMMNPQTK-KNKGFAFLRFATVEQAKRAVTELKNPVINGKQCGVTPSQDSDTLFLGNISKAWTRNTLKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSTRSDAMDAFKRLQKRDIMFGVDRPAKVSFADSFIDPGDEIMAQVKTVFVDGLPASWDEDLVGELLKKYGEIEKIELARNMPSAKRKDFGFVTFDSHDAAVTCAKSINNAEL 461
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1048.674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LIM4_9PHAE1.010e-10156.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTF9_ECTSI6.730e-9550.30Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A388JQ19_CHABU2.700e-2628.84Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
UPI001CC693B88.080e-2331.62heterogeneous nuclear ribonucleoprotein R-like iso... [more]
A0A8J5LX52_ZINOF3.530e-2230.33Uncharacterized protein n=7 Tax=Zingiber officinal... [more]
A0A2I0WI65_9ASPA8.670e-2228.09Polyadenylate-binding protein 2 n=3 Tax=Epidendroi... [more]
UPI001C4EDC8E1.860e-2131.25heterogeneous nuclear ribonucleoprotein Q-like n=1... [more]
A0A1D1YM63_9ARAE2.320e-2130.19Heterogeneous nuclear ribonucleoprotein Q (Fragmen... [more]
W1P4L8_AMBTC4.630e-2128.11Uncharacterized protein n=2 Tax=Amborella trichopo... [more]
A0A8K0MH84_9ROSA1.060e-1927.76Uncharacterized protein n=1 Tax=Rhamnella rubriner... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1048contigS-firma_F_contig1048:14220..24555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FTF9
PFAMsRRM_1
Max annot lvl2759|Eukaryota
KEGG koko:K14795
GOsGO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005737,GO:0006417,GO:0006950,GO:0006952,GO:0006955,GO:0007623,GO:0008143,GO:0008150,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0016020,GO:0017148,GO:0019219,GO:0019222,GO:0030425,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031330,GO:0032268,GO:0032269,GO:0032270,GO:0032991,GO:0034097,GO:0034248,GO:0034249,GO:0034250,GO:0034341,GO:0036477,GO:0042221,GO:0042995,GO:0043005,GO:0043025,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043487,GO:0043488,GO:0043489,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0045087,GO:0045727,GO:0045934,GO:0048027,GO:0048255,GO:0048511,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051716,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0070717,GO:0070887,GO:0070934,GO:0070937,GO:0071013,GO:0071204,GO:0071310,GO:0071345,GO:0071346,GO:0080090,GO:0090365,GO:0090367,GO:0097159,GO:0097447,GO:0097452,GO:0097458,GO:0120025,GO:0120038,GO:1901363,GO:1902369,GO:1902373,GO:1902494,GO:1903311,GO:1903312,GO:1990635,GO:1990904,GO:2000112,GO:2000113
Evalue3.28e-96
EggNOG OGsKOG0117@1|root,KOG0117@2759|Eukaryota
Descriptioncytidine to uridine editing
COG categoryS
BRITEko00000,ko03009
Hectar predicted targeting categoryother localisation
Exons11
Model size1687
Cds size1560
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1048.674.1prot_S-firma_F_contig1048.674.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1048 14220..24430 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.591265-CDS-S-firma_F_contig1048:14219..143601622815582.591265-CDS-S-firma_F_contig1048:14219..14360Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1048 14220..14360 -
1696949433.0298586-CDS-S-firma_F_contig1048:14219..143601696949433.0298586-CDS-S-firma_F_contig1048:14219..14360Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1048 14220..14360 -
1622815582.604725-CDS-S-firma_F_contig1048:15516..155591622815582.604725-CDS-S-firma_F_contig1048:15516..15559Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1048 15517..15559 -
1696949433.0424616-CDS-S-firma_F_contig1048:15516..155591696949433.0424616-CDS-S-firma_F_contig1048:15516..15559Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1048 15517..15559 -
1622815582.6154597-CDS-S-firma_F_contig1048:16464..165861622815582.6154597-CDS-S-firma_F_contig1048:16464..16586Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1048 16465..16586 -
1696949433.0743968-CDS-S-firma_F_contig1048:16464..165861696949433.0743968-CDS-S-firma_F_contig1048:16464..16586Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1048 16465..16586 -
1622815582.62802-CDS-S-firma_F_contig1048:17386..175301622815582.62802-CDS-S-firma_F_contig1048:17386..17530Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1048 17387..17530 -
1696949433.1065805-CDS-S-firma_F_contig1048:17386..175301696949433.1065805-CDS-S-firma_F_contig1048:17386..17530Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1048 17387..17530 -
1622815582.639117-CDS-S-firma_F_contig1048:18131..183051622815582.639117-CDS-S-firma_F_contig1048:18131..18305Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1048 18132..18305 -
1696949433.119027-CDS-S-firma_F_contig1048:18131..183051696949433.119027-CDS-S-firma_F_contig1048:18131..18305Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1048 18132..18305 -
1622815582.652892-CDS-S-firma_F_contig1048:19107..191911622815582.652892-CDS-S-firma_F_contig1048:19107..19191Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1048 19108..19191 -
1696949433.1289732-CDS-S-firma_F_contig1048:19107..191911696949433.1289732-CDS-S-firma_F_contig1048:19107..19191Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1048 19108..19191 -
1622815582.6761932-CDS-S-firma_F_contig1048:19946..200691622815582.6761932-CDS-S-firma_F_contig1048:19946..20069Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1048 19947..20069 -
1696949433.1396573-CDS-S-firma_F_contig1048:19946..200691696949433.1396573-CDS-S-firma_F_contig1048:19946..20069Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1048 19947..20069 -
1622815582.6929555-CDS-S-firma_F_contig1048:20425..205001622815582.6929555-CDS-S-firma_F_contig1048:20425..20500Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1048 20426..20500 -
1696949433.1496792-CDS-S-firma_F_contig1048:20425..205001696949433.1496792-CDS-S-firma_F_contig1048:20425..20500Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1048 20426..20500 -
1622815582.7072883-CDS-S-firma_F_contig1048:20809..208871622815582.7072883-CDS-S-firma_F_contig1048:20809..20887Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1048 20810..20887 -
1696949433.1643012-CDS-S-firma_F_contig1048:20809..208871696949433.1643012-CDS-S-firma_F_contig1048:20809..20887Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1048 20810..20887 -
1622815582.7223048-CDS-S-firma_F_contig1048:22353..228361622815582.7223048-CDS-S-firma_F_contig1048:22353..22836Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1048 22354..22836 -
1696949433.1756444-CDS-S-firma_F_contig1048:22353..228361696949433.1756444-CDS-S-firma_F_contig1048:22353..22836Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1048 22354..22836 -
1622815582.7334607-CDS-S-firma_F_contig1048:24337..244301622815582.7334607-CDS-S-firma_F_contig1048:24337..24430Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1048 24338..24430 -
1696949433.1864707-CDS-S-firma_F_contig1048:24337..244301696949433.1864707-CDS-S-firma_F_contig1048:24337..24430Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1048 24338..24430 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.7435243-UTR-S-firma_F_contig1048:24430..245551622815582.7435243-UTR-S-firma_F_contig1048:24430..24555Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1048 24431..24555 -
1696949433.195825-UTR-S-firma_F_contig1048:24430..245551696949433.195825-UTR-S-firma_F_contig1048:24430..24555Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1048 24431..24555 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1048.674.1

>prot_S-firma_F_contig1048.674.1 ID=prot_S-firma_F_contig1048.674.1|Name=mRNA_S-firma_F_contig1048.674.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=520bp
MTLTPQKARAMTVPKIKEELTERGLDTTGKKAVLVERLLAHAADEKAEPE
PEEEEEEEALSETEEPEAAAEPAAAAEPETPAEPEAAAEPEPEAAAEPEA
EVVKAEDAAEEGGSADKDGGSADSNAEEAKKVKDENEGEGGEEEEKAGDV
KGEEKAAEVDADAAETSSTGAAEAEAGDGDRNGDEPPSKKAKTANGASAK
KPTPARQPRMSGDPKGKEIFIDNLPATATEEAVKELAADVGGEVISVRVM
MSKDEEPKCTGLALVRFKEREFAAKALKSIPDQELDGNKLEARPSSNVNT
LFIGSLSKNWTKEMVLKEFEEKLEGVVNFEVAPDNIGHNVNRGFGFCTFK
DQEACKAAHSKHESIKLEILDTPVVLHWAESKGGREEDESGVYLSNVVED
VTSDFIRKELGRFGEIKEVVLGADNPNNKRKDFVIIKFIKPDSAAACIES
INGTDMKGRKVTAVKAQAKRRRESGGPRGGGPGGRSHGGGRSGGGMGGGS
RSRGQGGYGGGGGGGRRGGG
back to top

mRNA from alignment at S-firma_F_contig1048:14220..24555-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1048.674.1 ID=mRNA_S-firma_F_contig1048.674.1|Name=mRNA_S-firma_F_contig1048.674.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=10336bp|location=Sequence derived from alignment at S-firma_F_contig1048:14220..24555- (Sphaerotrichia firma ET2_F female)
CGGAGTTTTGAGTTCTTGACCGAGATCCTCAAGTTGTAGGTCGAGGGTAC
CCCACGCGTTCCGGAGCGTTCCCGCTTTTTTTGGTGCTCTCTCCACCCCT
CTCTCCAAAGAGCTACACGAGCAATATGACGCTCACTCCTCAGAAGGCGA
GGGCGATGACCGTGCCCAAGATCAAGGAAGAGCTGACCGAGAGGGGTCTC
GACACAACCGGGAAGAAAGTGAGTTTCCCGGCCTGTTTGGTGGTGTTGCG
AACAAGATTGGGGGCAACTACGTACTCTGTCTGCCGCTGTTGTGTGTGTT
CTCCTCAAAACTTCTGTGGTTTTTGGTTCCCCCTGCGGGCTCCTGCTGGC
AGCTACAGCACAGCAGTAGCGGTGGTGGGGCTGTTTGAACACGGGTTGCA
CGTGATAACCTCGCACCAACTCGGTGGCCGTGGTGCATCCCTCGAGTCGT
AGCCCTTTTCTCTTGTTCCCCAAGCCCGATCCACCAGTTTTCCGCTCATC
ATGTTCTCCCGTCGCCAAAAATATCACTTGGAAATAGACTGGACCACCCG
ATGCTCACGCACCGCCGCTCCGCCGTTGACTCGGCAACAGCAAGGCGTAG
GCTTTGCGCGCGATCGTGTCTAGCGTGCTTGCGTAGTACCCGGGGCTCAT
CGTGGCTTCACGCGCGCTTGCACGCCTTCTCCGGCGGTTGTGTGGCATTT
CTTTGCGAGAGTGTTGGCGTCGGCGGTGGGATGGTGATGCGTTCTGTGAT
GTTTGCGCTGCTGCTGTGAGCATGGTTGGTTGCTCGTTCATGGTGTGTAC
TGCTGTACTGCGTTCGCCCCCTCCTGTGTGACCCCGGTTGGTTTAGTTGG
ACAGAAAACTACGCTGCCAAATTGCAGTCCTCTGAATACACTCTGCAAAG
TGAAGTACACGTCTCGCCTTGACCAGAGGGACTGCTGTTACCAAAGTAGA
TGGGAAGAACACACACACACTCACACACACACCGCTGTACCTTCATACGG
AGTACTGCTGTAGTATACTTGTAATCGTCGTGAGCAGTATATAGCGGGAA
GTCGACATGTGTTCTTACTCTACTTCTGGGACGCAGCCGTCTTGCGCCAC
GGTCAGCGCCGCCTTGCCTTGTCAACCGGACTAGGAATCAGACTACTGGA
CGCTGGGGGGTGTCCGATCAAGCCGTGGAATAAATATCATGGGGATGCGA
ACAGTGCGCCAACTGCTGTGCCTGCCCCCTTTGGACATGGATACAGCAGC
AGCAGCAGCAGTATTTACCATCATACGAATGTCATGCAAATATCTTACTA
CTGTAGTTTACACCTTGTGGGTTTTTTTTTCAGTCGAGCTGCTTGAGCCG
CGAAGGACGCCACGACAGCAGCTGAGCCATTTTGCCATTGTGTCCGTTTT
CTTTCCACTCCTCCGCACTTGGCGTTTTGTGTGTCCCACCCCCCCCAACT
CGAGGTTAATTTAGACTCACTCCGTGGCGGCGTTGAACGCAAGCGAATGC
ATGCATTTTTTCATCGCAGGCTATCATTGTATGCATATTTACAATAGGAA
CGTGGCCGTCCTCCTTTCCGCCCACAAACTACCGGAGTGCTTCTTTCATG
TTGCAGCAGATCGCGCTCTTTCTGACATCGTCCGCACCCTTGCCCGATGA
TGCATATGCGCACGATCTATCGAATCGAACGGCGATCTATCGGCATGCCA
TGCCTCCACCATGTACCAGGCGGTCTTAGTGGAGAGGCTCTTGGCCCACG
CCGCCGATGAGAAGGCAGAGCCAGAGCCGGAAGAGGAAGAGGAAGAGGAA
GCGCTCAGCGAGACCGAAGAGCCTGAAGCGGCCGCAGAGCCTGCAGCGGC
GGCAGAGCCGGAGACGCCCGCTGAGCCCGAAGCGGCTGCAGAGCCTGAGC
CCGAAGCGGCTGCTGAGCCTGAAGCGGAGGTCGTGAAAGCCGAGGACGCC
GCGGAAGAGGGAGGCTCGGCGGACAAAGACGGGGGTTCGGCGGACAGTAA
CGCGGAGGAGGCGAAGAAGGTGAAGGATGAGAACGAGGGTGAGGGTGGGG
AGGAAGAGGAAAAGGCTGGTGACGTCAAGGGAGAGGAAAAGGCCGCAGAG
GTCGACGCAGACGCGGCAGAAACTAGCTCTACCGGTGCTGCTGAAGCTGA
AGCTGGAGACGGAGACAGGAACGGGGACGAGCCCCCGAGCAAGAAGGCCA
AGGTGAGGGGGGTGTGCGTGGGTGTTGTGTGTGTGTTTCCTGTTGTAGAG
AGGCAGAAAGGTGCGGTGTATGTGTGTGTGTAGCCTGTTGTAGAGAGGCA
GAAAGGTGATGCGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCCT
GTTGTAGAGAGGCAGAAAGGTGATGCGGTGTATGTGTGTGTGTATTGTGT
GTGTAACCTGTTGTAGAGAGGCAGATAGGAGAGAGGCGGTGTACCCACGC
GAGCCCGTAGTGCCTGTAGTCGCCTTTTCCTCCTCCCCTCTTCCATTGGA
GCTGCCTATGCAGCCACTCACAGCGACGACCAACAACAAACCAGCAGGCA
TTGCCGAGCGATGCTACGATAGGGGGGTCGCTTCGCCAAGAGACAACCGA
TCACTTTCAGGTTGATGAAATTCCGTCGCTTTTCTCGGGCTGTAGACGTG
GAGTACACCAGATGCGACCCTCCAAACATGCTAGTCTAAGGCGGCCAAAT
TATGCAAACGACATGTTTGGAAGAGACTTTAAGGGCGCCCGCCCTCACGT
CCTTAGCACGTGCAGGAATCGCGTGGCCAAAGTGAAGTCGTGAGTGCACC
GCCCACTACCGTAGAATCGCGGTACTGTAATCGATACACAGCTCAGCGCG
TTCTCGGCCTTGAGAGGGGTATGCGCTTGTACATGGTGGTGGTGGTGATG
ATGATGCGGGCAGGAACGTAGAATCGCGGTACTGTAATCGATACACAGCT
CAGCGCGTTCTCCGCCTTGAGAGGGGTTTGTGCTTCTACATGGTGGTGAT
GGTGATGCGGGCTGAAAAGCTTTGGCAACAGCAGCAGGGGCCCAACAACA
GCAGCCATCTACATGTAGCGTAGCGTGTCATGTCCGTCTTCTTTTGTGGA
GTGCGGAGAAACCAGCAGCGCGTCCATCCTCGGCCCTGCCTGCTCTTGTC
CGTTTCTTCTATGAGATCGGCACGAGAAGCTGGTTTTCTTCTTTGAAAAC
TCCGTTACAATGTGAAAAAGGTCCCCCCTTTGAACGATTCATTTTCGGGT
CATCTACGCAGTGTATATATATATATATATACTGTATGTATGCATTAATA
GGATTGTCATGTCAAACAGGAGTACGACGGGTTGAGTTAAGATTTTGTTG
GATACATTTGCAAGTAGTTGTCGGATGGCAAATAAAAAAATTAAAATTCA
TTTTGCGGGTCGAACGCAACGCGGCTGGCATTGTGCACAACAGTTTGTTG
AAAACAAGGTGGTGACACGTGCCTCCGCAGGAAAAGACCTATCATATTCC
CCCGCAGGCAGGCAGCGCTTGCTGTGTGGTCTCCAGCTCGGTTCTAAAAG
AATCCCCCCCTCTCTTTCCGCCGACGCCCTCTCTGCCTTTCTCTGTCTTT
CTTCACTCCGGTCGTGTGTGTGCGTGCGTGTGTGTGTGCGTGTTTGGTCT
GTTTTTTGTCTTTCGCAGACGGCCAACGGAGCGAGCGCCAAGAAGCCGAC
CCCCGCTCGGCAGCCCAGGATGTCGGGGGACCCGAAGGGGAAGGAGGTAG
GTTAGGTTAGGTTAGATCCCGATTATTGTAGGTATGTAACCCTCCCCGTC
CCAAACAACAGGTCTAAATCCGCATTCCATTAGGTCTGTTGGTTGTTTAT
TTTCTTCGTCTTTTGTAAGGGGGTATGTTGTTCAGCGTATGTGTGTTATC
TTCCGTATGATCACCGGACTGTTTGTCTTGTTTTGCCTTGTGCCCCCCTT
TGTGTTCAGATCTTCATCGATATCCATCCATCCATCCATCCATCCATCCA
TCCATCCTGCTTTTGGTCTTGTTTTGCCTTGTACCCCCCTTTGTGTTGTG
TTCAGATCTTCATCGACAACCTGCCGGCGACAGCCACCGAAGAGGCCGTC
AAGGAGCTTGCTGCGGACGTGGGGGGAGAGGTGGGCACAACACAAACACA
ACCTATATAGAGTAAAACATATATACTAACTTTTCGCCAACCCTTTCAAG
GAATTGTCCTAAATTACCGAAGAACTTTCTACTCAAACCCAGCAGTGCTG
TAGAACCTAGTTTGTATTGATTAATGTACCAAACCTACCAGTCTGCTATT
GAGAATAGCGCTGGCGATGTAGAGTAGACTAAATACATTTTTGTACCTGC
TTTGAAGATACTGGTACTGCGGTACTGCCTGTATGGTGTATGAAACCTTC
TTTCTTGCCTCTCACCACCCGTGTATGTTCGTGTCCGTGTTCCTGCTGCT
GCTGCTGCCGCTGCTACTGCTATGGGTTGTTTTCAGGTGATTTCCGTGCG
GGTGATGATGAGCAAGGACGAAGAGCCCAAGTGCACCGGCCTGGCCCTGG
TGCGGTTCAAGGAGCGAGAGTTCGCCGCCAAGGCCTTGAAGTCCATCCCG
GACCAGGAGGTGTGCGTGACATGGTTCTTTGAACGGTCTGTGCCAGTGCG
GCATGGAGTACAAGACGCCAACGCCATGGATAAATTTGATCGATCTGTGC
CAGTGCGGCGTGGAGTAGAACACGCCAACGCCACCGATAAATGCAATTTA
TGACTTCTCTGCTGTACGCACTTTGTTGCTTGTTGTCCCTTCTGGAGCTC
GCTCGCAGCAGCTAACGCCATTCAACAGCAGCAGTTTACCGCCCTAGTGT
TTTTTTCTCGGCAGACTGCAAGCAGTGCGGCTGAGACTTCCCGTACAGCA
GTTTAGCAGTAGTGCCTATTTTTTCTGCTGTTTCGTACCCCAGGAGCTCG
GCAAGGGGCGAGAGTTTTTATTTTATTTTTATTTTTAATAAAATTTCTAC
TTTCGTCAGCCGTAACAGTACGTCCGTCCTGTTGTACACACACTATCCCT
CCCCGTCCCATTTGGACATTCGGTTTCCTTGCCTTGGTGCCCACGGAGAG
AGAAGTTTGTTGATTGGCACTAGATACCCCCGCTACTTGTCAGAATTGCG
CGCGTCCGCTTACTCCCGGGTTTGACCACCTACTGTACTGTACCAGTATT
CTCGTCCTGCCGTGGGTGCTGTCCGTCGTTTGTATTGTATGATTTTTTTG
AAAGAAAGTCATGGAATCAACGACAGAACCTCCCCACATTGGAGACGGGA
CTGACTCCGTGGGTTGGCTCAAAACGGTGTTCATTCCGTGCATTTTTTTT
TTTCGTTGGAACAGCTCGACGGCAACAAGCTCGAGGCCCGTCCGTCGAGC
AACGTCAACACCCTCTTCATCGGCAGCCTCAGCAAAAACTGGACCAAGGT
AACGGAACATTCCTGGAACATTCTTGCTACTGTAGGAGGGGGTCCAACAG
ACTGGACACTTTCACATACCAGGTACCGGAGGAGGGGGTCTTGTCCAACC
CCCCGCTCCTGTGTGACCCCGGGTGGGTCGCCTAGCTAGTCGTAGTGGAG
GATGGGGGCCAGTGGGGCAGACGACAGAAACACTTATGGGAAAGAAAAAA
AAAAAAAAAAAAACTCCGTATTTGATTGTTTGGTCTCGTTTTCCCAGAGC
CCCGAACGGGCTGTTTTTCTGTCTCGCCGCGGGAGTTTTTTTCTGCCGCT
GAAAGGTGATTTGCGTCCGTTTTTACTTCAAGAGAGGTCCCGTCCGTCGC
CAAGAGTCTCTCTCATTCGTGTTCGACCTAAACTACACTAGCACTCTTTA
TTCACGCAGTCGATGTCCGTCGCCAGAAAGCCTCATTCGCGTTCGACCTA
TAATTCATCTGGCACTCTTTATTCACGCTATCGATGTCCGTCGCCAGAAA
GCCTCATTCGCGTTCGACCTATAATACATCTGGCACTCCTTAGTCACGCA
GTCTATGCCCGTCGCCAGAAAGCCTCATTCGCGTTCGACCTATACTACAT
GTGGCACTCCTTATTCACGCAGTCTATGCACATCGCACGCTAATTTACGC
ATGTACCAGCGTACATGAACCTTATTTTGGCGCTCATGTTGCCGACACAC
CCACCGCAACGCAACACGTGCGGCCATCTGCTGTGCCCCCCCCCGCGCCA
AACCGCCGGACTTTTGAATTGGAATTGGATCAAAACTTGTTCGTTTTCAG
GAGATGGTCCTGAAGGAGTTCGAGGAGAAGCTGGAAGGCGTCGTCAACTT
CGAGGTGGCGCCGGACAACATCGGCCACAACGTCAACAGGGGTTTCGGGT
TCTGCACGTTCAAGGACCAGGAGGCCTGCAAGGCGGCGCACTCCAAGCAC
GAGTCCATCAAGTTGGAGATCTTGGTCAGTGCAAGCCACTTTTCGTGTAT
TTTCTGGTGCAATAATTATAATTTACGTCAGCCGTATTTATACGTCCGTC
CTGTGAATAGTAAACCGTTCCAGGGGGACCATCTGCTGTATGCACACTAA
CCCTCCCCGCCCCAGCCAACAAGCGCTTTTGTCTATAAGGCGTGATGTGT
GTTAGTACTGCGGTCAGTGCTTCCATACTGTTGGTATGTCCGCCAAGTTG
GAAATGTTGGTCAGTGCGAGGGCCTGTTTGATTAGGTGTGGGTACTTTTA
CACCACCTTTCGCGCCATTTTTTTTTTCCCTTTTCCCGCCTGTTCGGATT
AGATAATTCATCAGTATTTTATCATTATTTTTCCAAGAAGAACGGTAGTG
CGACCTCTTTAGCCCCACCTTCCCCCTCGTCTCACGCCCACCCTAATAAT
GACTCTACAACACATGCTTGTACCTTCTTTTTTTCAATTTTTTTTATTCT
CCCTTTTTTCTCCTGTTTTCTTGTATTTTGTTTTTGTTTGTTCCAGGATA
ACCCCACCACCCTCACCCTATTGTACGCTACAAAACATCACCCCTTTTTT
ATTTATTTTTTATTTATTTTTTCAGGATACCCCCGTGGTGCTGCACTGGG
CGGAGTCGAAGGGGGGCCGGGAGGAGGACGAGAGCGGCGTGTACCTCAGC
AACGTCGTCGAGGACGTGACGAGCGACTTCATAAGGAAGGAGCTCGGCCG
GTTCGGCGAGATCAAAGAGGCGAGTGACGACGACAGAGAGAGAGAGAGAC
AGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCAAATAACAA
TCTACGAAATCTACGAAGTCTACGAAGTAACAAAAAACAAAAATAAATCT
CTGCATTGGACAGTTAAACCACCGCATCAGACCTCGGTCCTGCAGTGGAG
TTCTTTCTTGGATTCCCCGTTTGATTTTTCAAAGAGACATCTGTGCGGAT
GTTGGCACTAGGCGTGGGTGGCGCTTGCTTGTGCTGCGCTGCCGCGATTG
GGTCGTGTATCGCTCACTCCCTTGGTTGGGGTTGGGGTTGGTGTTGGTGA
GAGACTGTTAGACCCAATTATGAAACATTTAAGGTGTTGAACCCATACAC
ACAAACATGAGAAAAAAAGGCAGTAGTAACTTGAAAACCTGGACGAATTT
AGCTTCCTAGAATTGTCTTTTTGTAAGGTTTTCAAGCGTTGATTGTGCGG
GCTGGTTCTGTGATACATGCTGTTGGTGATGAGCAAGATATGAGACAGAC
ATCAAGAGCAAAGAAGAACCATATGCTATGTCTCCTCTAAGGAAGCTACG
GGCGTGCATCCCGGCTGGCTGGCTGACGCCAAGTATCACAATGCTACTTG
CCGTCGCTTTTTTTCTTGTTTTTTTTCTGCGTTGGGTTGTTTGTTCGCGG
GTCGGTGCTCTGCTCTTAAATTCCAATCCCAACCCTAACCCTCATCCCAA
TCCTAATCCTAATCCTTATCCCAATCCTTATCCCAATCCTCATCCCAATC
CCAATCCCAATCCAATCAGGTCGTGCTCGGAGCAGACAACCCCAACAACA
AGCGAAAGGACTTCGTGATCATCAAGTTCATCAAGCCCGACTCCGCCGCA
GCCTGCATCGAGAGCATCAACGGCACCGACATGAAAGGAAGGTGGGTTAT
GGTGGGGGGGCATGAAACGAAGGTGGGTTAGGGTGGGGGGTGGGGGGCCC
AGGCGGCTCGGTCGCGGGGTTTCGGGTGCGAGCAGGCTTTATGGGGGCTC
AAGAGTGTGTAAATTTCAAATTTTCTAGACTGGGTAGGTCAATAGGAAAA
TGAAAAATGAGAAACGAGCTACAATAGATAGGCGCTTGTCCGCGAACGTG
CAGATGAGAGACAGAGACAGCCGTTTGTCTACTGTAATTTATAATTTAGT
CCACTACTGTACTGCCGTTTCGGTGACACCTACGTACGTGCCCCTCTTTT
GGTTGCGAGCGAGTACCCTACGAAACAAGTGGTTCTACGGTGCCCCCCCC
CCGTCTCGATTCAATTCGAGCTGTGCTGTCGGGGAGTCGCAACGCGAGTT
GTTATTTAAATAAATTATGGATGTCAAGCTGGATGTTTTTTTGTTTTTTT
TGCTCCTCCCATTAGTATTTTCTGTCGACTGCCCCACTGGCCCCCATCCT
CCACTACGGCTAGCTAGACGACCCACCCGGTATGTAGAGGTAGCTAAAAG
CCGTGTTTGGCCTACATGTACCGCTTTGGTTGAGGCGCGCTTGAGGTTTG
GTATAGTACTCCAGTTGTGTGATATCTGTGTGCAAGTTTTCGCGTGAGGA
GGGGGCTCTCGCCCGCGCTGCTGTGTTGCTGTGTTGCTCATTTGCTTGTT
TGCACCTACCTGCCACCTGCGCCCTGCTTTGCTCTTTCTCTGCCGTGACG
ACGTTACAAACCGTTACGACCGTTACAAACGTTACCACAGGAAAGTAACT
TGCTTGTTCGTACCTGCGCTCTGCTTTGCTCTTTCTCTGCCGTGACGACG
TTGCAAACGTTACAACCGTTTACAACCGTTACAAACGTTACCACAGGAAA
GTAACCGCCGTCAAGGCCCAGGCGAAGAGGAGAAGGGAGGTGGGTTCGGC
TCTCTTTTTTTTTTTGTTCTTCCCGGGTTCTATGTAGACAGAAAATAAAA
GTTGCTACGAAACGTCAGCCGAATACGTCCGTCCTGTGAATAAATCGTTC
CAGGGGACTACTGCTGTTGTATACACACGAACCCTCTCCTCCCCCCTTCT
CTTTTTTCTGTTGTTTGGTGTTTTTGCGGCGTCAATGCTTCTCCTTCGGC
TGTACTTCGTATACCGGTATATCGCATATCCCCTCCCAAAAAACATTTTT
TTGAAAATAAAACACACGGACAAAAACACACACACTTCTAAACATTTAAT
GTCCCTTCCAAGCACCAAGAAATAATAGCTAAGAAAACAGACACACACAC
ACACACACAATTTCGGCCTCGTTTCGTTGCTGTATACCTAGCAGCACATA
CTGCTGTAGCTCTCGCCCTCTCCGTGCGGTGAGAAACACCACACCACATG
TGATACGTGCGTTTCTGCGGAGGGAGCCACAAGTCGACCAGGCGTTAGAG
TAGTTCCGTGCCTCTCGAGCTTGTTGATCCTGCGCATAGAATTGACCAAA
GACCGTACAAAAGTACATGTTTTTTTTTTTCTCCTCCCATTAGTGTTTCT
GTCGACTGCCCCACTGGCCCCCATCCTCCACTACGACTAGCTAGACGACC
CACCCGGGGTCACAGAGGAGGGGGGGGTTGGACCCCCTCCTACTTGTATG
TGTATATATACTACGGAAAATCAAGCTTCTGATCACGCCGCATGAGCCAC
GCAAGCTATCAAATTATGATAATGGTTTTGTCTTGTTGTGTCTCAGAGTG
GCGGTCCCCGAGGCGGAGGACCCGGAGGACGATCGCATTAATAAACAACA
TAGCGCCCCAAACAATTAATTAATTAAATAAATTAAACACACACCGTATA
AATATCATCGCTTTCTCTTTTTTAATATTATTTTTTTTGTCTTGTTGTGT
CTCAGAGTGGTGGTCCCCGAGGCGGAGGACCCGGAGGACGATCCCATTAA
TTAAAAAAACACATATTGTCCGCCCCAAACAAACAATAAATAAATTAATT
AATTACTCCTAAAAAAACACACACATATAAATATCATCGTTTTGTCTCTC
TTCACATTTATTACAATAATATTGTTTTGTCTTGTCATGTCTCAGAGTGG
CGGCCCCCGAGGCGGAGGACCCGGAGGACGATCCCACGGAGGCGGAAGGA
GCGGCGGCGGCATGGGAGGAGGAAGCCGTTCTCGTGGCCAGGGGGGATAC
GGTGGCGGCGGCGGTGGCGGGAGGAGGGGTGGCGGC
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig1048:14220..24555-

>mRNA_S-firma_F_contig1048.674.1 ID=mRNA_S-firma_F_contig1048.674.1|Name=mRNA_S-firma_F_contig1048.674.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=3120bp|location=Sequence derived from alignment at S-firma_F_contig1048:14220..24555- (Sphaerotrichia firma ET2_F female)
ATGACGCTCACTCCTCAGAAGGCGAGGGCGATGACCGTGCCCAAGATCAA
GGAAGAGCTGACCGAGAGGGGTCTCGACACAACCGGGAAGAAAATGACGC
TCACTCCTCAGAAGGCGAGGGCGATGACCGTGCCCAAGATCAAGGAAGAG
CTGACCGAGAGGGGTCTCGACACAACCGGGAAGAAAGCGGTCTTAGTGGA
GAGGCTCTTGGCCCACGCCGCCGATGAGAAGGCAGAGCCAGAGCCGGAAG
AGGAAGAGGAAGAGGAAGCGCTCAGCGAGACCGAAGAGCCTGAAGCGGCC
GCAGAGCCTGCAGCGGCGGCAGAGCCGGAGACGCCCGCTGAGCCCGAAGC
GGCTGCAGAGCCTGAGCCCGAAGCGGCTGCTGAGCCTGAAGCGGAGGTCG
TGAAAGCCGAGGACGCCGCGGAAGAGGGAGGCTCGGCGGACAAAGACGGG
GGTTCGGCGGACAGTAACGCGGAGGAGGCGAAGAAGGTGAAGGATGAGAA
CGAGGGTGAGGGTGGGGAGGAAGAGGAAAAGGCTGGTGACGTCAAGGGAG
AGGAAAAGGCCGCAGAGGTCGACGCAGACGCGGCAGAAACTAGCTCTACC
GGTGCTGCTGAAGCTGAAGCTGGAGACGGAGACAGGAACGGGGACGAGCC
CCCGAGCAAGAAGGCCAAGGCGGTCTTAGTGGAGAGGCTCTTGGCCCACG
CCGCCGATGAGAAGGCAGAGCCAGAGCCGGAAGAGGAAGAGGAAGAGGAA
GCGCTCAGCGAGACCGAAGAGCCTGAAGCGGCCGCAGAGCCTGCAGCGGC
GGCAGAGCCGGAGACGCCCGCTGAGCCCGAAGCGGCTGCAGAGCCTGAGC
CCGAAGCGGCTGCTGAGCCTGAAGCGGAGGTCGTGAAAGCCGAGGACGCC
GCGGAAGAGGGAGGCTCGGCGGACAAAGACGGGGGTTCGGCGGACAGTAA
CGCGGAGGAGGCGAAGAAGGTGAAGGATGAGAACGAGGGTGAGGGTGGGG
AGGAAGAGGAAAAGGCTGGTGACGTCAAGGGAGAGGAAAAGGCCGCAGAG
GTCGACGCAGACGCGGCAGAAACTAGCTCTACCGGTGCTGCTGAAGCTGA
AGCTGGAGACGGAGACAGGAACGGGGACGAGCCCCCGAGCAAGAAGGCCA
AGACGGCCAACGGAGCGAGCGCCAAGAAGCCGACCCCCGCTCGGCAGCCC
AGGATGTCGGGGGACCCGAAGGGGAAGGAGACGGCCAACGGAGCGAGCGC
CAAGAAGCCGACCCCCGCTCGGCAGCCCAGGATGTCGGGGGACCCGAAGG
GGAAGGAGATCTTCATCGACAACCTGCCGGCGACAGCCACCGAAGAGGCC
GTCAAGGAGCTTGCTGCGGACGTGGGGGGAGAGATCTTCATCGACAACCT
GCCGGCGACAGCCACCGAAGAGGCCGTCAAGGAGCTTGCTGCGGACGTGG
GGGGAGAGGTGATTTCCGTGCGGGTGATGATGAGCAAGGACGAAGAGCCC
AAGTGCACCGGCCTGGCCCTGGTGCGGTTCAAGGAGCGAGAGTTCGCCGC
CAAGGCCTTGAAGTCCATCCCGGACCAGGAGGTGATTTCCGTGCGGGTGA
TGATGAGCAAGGACGAAGAGCCCAAGTGCACCGGCCTGGCCCTGGTGCGG
TTCAAGGAGCGAGAGTTCGCCGCCAAGGCCTTGAAGTCCATCCCGGACCA
GGAGCTCGACGGCAACAAGCTCGAGGCCCGTCCGTCGAGCAACGTCAACA
CCCTCTTCATCGGCAGCCTCAGCAAAAACTGGACCAAGCTCGACGGCAAC
AAGCTCGAGGCCCGTCCGTCGAGCAACGTCAACACCCTCTTCATCGGCAG
CCTCAGCAAAAACTGGACCAAGGAGATGGTCCTGAAGGAGTTCGAGGAGA
AGCTGGAAGGCGTCGTCAACTTCGAGGTGGCGCCGGACAACATCGGCCAC
AACGTCAACAGGGGTTTCGGGTTCTGCACGTTCAAGGACCAGGAGGCCTG
CAAGGCGGCGCACTCCAAGCACGAGTCCATCAAGTTGGAGATCTTGGAGA
TGGTCCTGAAGGAGTTCGAGGAGAAGCTGGAAGGCGTCGTCAACTTCGAG
GTGGCGCCGGACAACATCGGCCACAACGTCAACAGGGGTTTCGGGTTCTG
CACGTTCAAGGACCAGGAGGCCTGCAAGGCGGCGCACTCCAAGCACGAGT
CCATCAAGTTGGAGATCTTGGATACCCCCGTGGTGCTGCACTGGGCGGAG
TCGAAGGGGGGCCGGGAGGAGGACGAGAGCGGCGTGTACCTCAGCAACGT
CGTCGAGGACGTGACGAGCGACTTCATAAGGAAGGAGCTCGGCCGGTTCG
GCGAGATCAAAGAGGATACCCCCGTGGTGCTGCACTGGGCGGAGTCGAAG
GGGGGCCGGGAGGAGGACGAGAGCGGCGTGTACCTCAGCAACGTCGTCGA
GGACGTGACGAGCGACTTCATAAGGAAGGAGCTCGGCCGGTTCGGCGAGA
TCAAAGAGGTCGTGCTCGGAGCAGACAACCCCAACAACAAGCGAAAGGAC
TTCGTGATCATCAAGTTCATCAAGCCCGACTCCGCCGCAGCCTGCATCGA
GAGCATCAACGGCACCGACATGAAAGGAAGGTCGTGCTCGGAGCAGACAA
CCCCAACAACAAGCGAAAGGACTTCGTGATCATCAAGTTCATCAAGCCCG
ACTCCGCCGCAGCCTGCATCGAGAGCATCAACGGCACCGACATGAAAGGA
AGGAAAGTAACCGCCGTCAAGGCCCAGGCGAAGAGGAGAAGGGAGGAAAG
TAACCGCCGTCAAGGCCCAGGCGAAGAGGAGAAGGGAGAGTGGCGGCCCC
CGAGGCGGAGGACCCGGAGGACGATCCCACGGAGGCGGAAGGAGCGGCGG
CGGCATGGGAGGAGGAAGCCGTTCTCGTGGCCAGGGGGGATACGGTGGCG
GCGGCGGTGGCGGGAGGAGGGGTGGCGGCAGTGGCGGCCCCCGAGGCGGA
GGACCCGGAGGACGATCCCACGGAGGCGGAAGGAGCGGCGGCGGCATGGG
AGGAGGAAGCCGTTCTCGTGGCCAGGGGGGATACGGTGGCGGCGGCGGTG
GCGGGAGGAGGGGTGGCGGC
back to top