mRNA_S-firma_F_contig10461.654.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10461.654.1
Unique NamemRNA_S-firma_F_contig10461.654.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10461.654.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10461contigS-firma_F_contig10461:117..4536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size501
Cds size501
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10461.654.1prot_S-firma_F_contig10461.654.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10461 117..4536 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815580.900555-CDS-S-firma_F_contig10461:116..2301622815580.900555-CDS-S-firma_F_contig10461:116..230Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10461 117..230 +
1696949431.9755957-CDS-S-firma_F_contig10461:116..2301696949431.9755957-CDS-S-firma_F_contig10461:116..230Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10461 117..230 +
1622815580.9151733-CDS-S-firma_F_contig10461:1405..15131622815580.9151733-CDS-S-firma_F_contig10461:1405..1513Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10461 1406..1513 +
1696949431.988366-CDS-S-firma_F_contig10461:1405..15131696949431.988366-CDS-S-firma_F_contig10461:1405..1513Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10461 1406..1513 +
1622815580.9333003-CDS-S-firma_F_contig10461:3120..32961622815580.9333003-CDS-S-firma_F_contig10461:3120..3296Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10461 3121..3296 +
1696949431.997484-CDS-S-firma_F_contig10461:3120..32961696949431.997484-CDS-S-firma_F_contig10461:3120..3296Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10461 3121..3296 +
1622815580.9462452-CDS-S-firma_F_contig10461:4433..45361622815580.9462452-CDS-S-firma_F_contig10461:4433..4536Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10461 4434..4536 +
1696949432.0069618-CDS-S-firma_F_contig10461:4433..45361696949432.0069618-CDS-S-firma_F_contig10461:4433..4536Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10461 4434..4536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10461.654.1

>prot_S-firma_F_contig10461.654.1 ID=prot_S-firma_F_contig10461.654.1|Name=mRNA_S-firma_F_contig10461.654.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=167bp
CGRGLQWKKALSSLVEMREAGVKANSFVYSAAIDACAKGRQWQKALVLLR
EMEAVDGLPGNLICYNAAVDACGKAGRPGEALALLSKMRKAGIKPNAVSY
LSAISACSRVGDWQQALWLLDEMTVFGVQPDLKCFCSAITACGKGGKWKQ
ALEVLDAMHRDGPPPND
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mRNA from alignment at S-firma_F_contig10461:117..4536+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10461.654.1 ID=mRNA_S-firma_F_contig10461.654.1|Name=mRNA_S-firma_F_contig10461.654.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4420bp|location=Sequence derived from alignment at S-firma_F_contig10461:117..4536+ (Sphaerotrichia firma ET2_F female)
TGCGGTCGGGGCTTGCAGTGGAAGAAGGCCCTGTCGTCGCTGGTGGAGAT
GCGGGAGGCGGGCGTCAAGGCTAACTCGTTTGTGTACTCAGCAGCGATCG
ACGCTTGTGCCAAGGTCGGTCACTGAATTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTCATCACAGTAAAAACCATCCCGGTCTCTCTATCCA
GTACCTCCTTCTGTCTCAACCTCTCCGCACTAATCCATCACTTGACGCGG
CCAATTTCAGTGGTCACAGGCTAACACACCTGAAAAAGGTATAGAAAAAA
AAAATGGACCCCAAGGGTCGGCAGAGCGATAAAATCATACCGTAGGAGGT
TATAGACGAATTATATTTTTAGTTGTGTTCTCCTCCCATTAGTGTTTCTG
TCGACTGCCCCACTGGCCCCCATCCTATACTACGACTAGCTAGACGACAG
ACGACCCACCAGGGGTCACAAAGACAGGAAGGGGGGGGGGGGGTTGACCT
CGGTACCGAAGCTACTGAAGCCATTGAATCCATTGTAGTATGGTGTTGGG
TGTATTTGTTCGTCGAAACCCTGCCGCTTCACTTGGTCTGACCGTCGAGG
TCAGTTTTATCGAAGCCTTCTCAAGCCTTGCCATCCATTTGTTTGTCGTT
GAGATTGGTTTATCGAAGCCTTCTAAAGCCTTGCCGCTCGTTTGCTTATC
GCTGAGATTGGATGATCGAAGCCTTCTAAAGCCTTGCCGTCCATTTTTTT
TGTCCATCGCCAAGGCCACATCGTCTACTCTATGTACTATGTACTATGCA
CCGCCAATCCTGCCCTGACTCTCACCGTCACTGGCTAACCACTAGCCTGT
CGCCGATATTCCTGTCGCCAGTGCCAGTCTTTCGTCCCCCCCCCCGATTC
AAAACTCGCAGCAGATTCTAGATAATAACGGCACTCTCTTTCTCTCTCTC
TCTCTCGCTGTGAAATGTTCTGTGTTTTCCTGTCCCCTCCCCTCCCCCCA
ACGCTCCACTTGTCGTTGTCGATGCTCCCTGTCGCTAGCTTTTATACGTA
CTTGACCTCGATCGTGTTCGGGCTTCCGACACTTGCTGTCGCTATTTGTT
TTTTGTTTTCCCTGCCTTCTTATCGTGATGTTGCTGCTGCTGCCGCTGTT
ACTGCTGCTGGTGCTGCTGTTACTGCTGGTGCTGCTGGTGCTGCTGCTGG
TGCTGCTGCTGCTGGTGCTGCTGCTGCTGCCGCTGCCAGGGGCGACAATG
GCAGAAGGCGCTGGTCCTGCTGCGGGAGATGGAGGCTGTGGACGGGCTGC
CGGGGAACTTAATTTGCTACAACGCCGCCGTTGACGCCTGCGGCAAGGTG
AGTCTTGTACTGTATAATTGTGTGTTCGTCTTGTCGTATTTTCGTCTTGT
AGTCTTGTAGTCTTGTAGTCTTGTAGTCTTTTCGTCTCTTGTAGTGTTGT
AGTATTTTCGTCCGGTAGTGTTTTCTTGTTGTTGTGTTTTCGTCTTGTCG
TCTGTTCGTCTTGTCACTCCACTCACTTCACTTCACTTCACTTGATCATG
CAGCAGCAGCACAGAGCCGCCCGAATCTATCTGCATATGTACGATTTTCA
AGCAGGCAGACAGGCAGTGTTGACGCTGTTTGGTCGGGTACGACGTGCAG
CCGGCGTCCTTTTTTTTTTTTTTTGTCTCTTTCCGATCATTGTTTTGTGT
GTGTGTGTGTGTGTGTGTGTGTTTTTTTCGTCGCCTGCCTCCCTCATCCT
TCCCTCCACACGTATAGCTAAGATAGACGTTCCAACCGGGGGCACACAGA
CAGGAAGGGGTGGGGGGGTGTCGTGAACGATTGACGTGACGAAGCAAGAC
GCGAGGGAGACAGGAGACAGCAGCGTCTCTTTGGAGTCGTGTGGTTTTGA
CCATGCTCACGGAAGAAAGAGCAGACTACCTCACGAATGACACAGCACTA
TTGAATAGTCTACGTAGATGAGCCTACCACGGAAGAAAGAGCAGACTTCT
CACGAATGACACAGCACTATTGAATAGTCTACGTATGTAGATGAGTCCAC
CCCGCGTCGGACGAGAAGGGACATCGCTTGGGTCCGTCTTTCACGGAGCT
GCTCCATTCGGTCAGAATGTGGTGACGTCATGTGGTGACGTCATGTGGTG
ACGTCATGTCATCAAGTTCTGTCACCCCACTCGACGTTCGACGAGCATGA
CGTCATCTTGTTCAGTCCTGTCTTTAGTCTTTAGCCTTTCGCCACAGCGC
GGCCTCTGCTGCCTGCGCCCGAGGTCAGCTCACACCCCACTGCACCTCAC
CTCACCTCCTCCGCGAGAGGATTGCATCGTCTCACCCCACTGGGTCAGCT
CTCACCCACCTGCACCTCACGAGAGAATTGCATATTTCACCCCACGGTAG
TCCATGGCACCGCCCTCAAAGTGTCGATACTGCTTTCGTCAAGCAAAATC
TGCTTGGAGGTCGGTGAGTGTACTGCTTTCATGAAGCAATAACTTCTTTG
AGGTCGGTGGTGTGGTGTGGCTGCAAGTATCGGTGCTGCCGTCGATGCTG
CAAGGGCAAGTACCTCACTCTCCATTCCGCTCCGCCGAACCCGCTTGGGC
ACCGCTCGTGCCACGATCGTCATTTCTCGACTTGTTTCTCCTTTTTTTGG
ACATTCGGTCCTAAATTATTCGGTTTTGATTCCGGCGGCGCGAAGAAGCG
CAAAACATCTCACCGCACAGACCAGCAGTACCCAAAATCTTTTGATTGAA
ATTTTGTCCCCGAACCTTTTACATACCCCCCCCCCGTCCCCCCATGAGAC
GCATTTTTTTATTCGGAGGGTAGGCACGTCGAAGCATGGCCCTCCCATTA
ACCCCCCTCACGAAAAACATTTTTTTTTCGGGGGGTACATATGCACGGCG
AAGCATGGCCGTCCCTTAACCCCCCCCCCCCCGTTAAACACATTTTTTCA
TCAGGCGGGTAGGCCCGGCGAAGCTCTGGCCCTCCTGAGCAAGATGCGGA
AGGCGGGCATCAAGCCCAACGCGGTGTCGTACCTGTCGGCCATCTCGGCG
TGCTCTCGCGTCGGGGACTGGCAGCAGGCCTTGTGGCTGCTGGACGAGAT
GACGGTGTTCGGGGTCCAGCCGGATCTAAAGTGAGGCTTTGGTTTGGTAT
TGGTTTTGGTTTGGGTTTTGGGTTTGGATTTGGTTTTGGTTTGGTTTGGG
TTGATTTGGTTTTGGGTTGGGTTGGTTTTGGGTTTTTGTGTTGTGGTGTT
GTTGTGGTTTTGGTTTGGTTTGGCGTGGTTTGGTGTGGTTTGGTTTGGTT
TGGGTTTGGGTTGATTTGGTTTTGGTTTGGTTTGTTTGGCTTGGGTTGGG
TTGATTTGGTTTTGGTTTTGGGTTGGGTTGGGTTGGGTTGGGTTGGGTTG
GTTTGGTTTGGTCTGGGTTCATTTGGTTTGGGTTGGGTTGATGTGGTTTG
TTTTGGTTTGGTTTGGTTTTGCTTGAAACATAGATCGAAGAAGGCACCTC
CTAACCCTAACCCTAACCCTAACCCTAACCCCGCAGTAGTGTAGGTTTGC
TCATACTTTCATCATGCGGTGAGGTGATGAAAACTGATGATAGGTATGGT
TTGCTCATACTTTATCATGCGGTGAGGTGATGAAAATTTTAGAGTTTCGG
GCCGCGTACATTTGCCTTCAACACGGGGTCTGTCCCTTTACCTTCAACCT
TCGACCTTCGCCTTCAACCTTCAACCTTCACCTTCGACCTTCAACCTTCA
ACCATAAGTAGGACCCAACATTCAACCTTCGACCGTAAGTAGGATCCAAC
GTTCAACCTTAGTAGGATCCAACATTCAACCGAAGCAGGATTCAGCACTC
ACCATAGTCCTCTTGCTTTGCTGCGCTTGCTGAGCTTGCTGAGAGGTTGA
ACGTTAGTTAAGTTTCTTGCATTTTTTTTTTTTGTGTGTTGTGGCGGTGC
TCGTGTCAAGATATGCAAGGCTCCTTCAGTAGCGCTTTGACAATTTTGAT
AACTGCACCGCCGTACCAGTAAGTGCCATGGTGTTTTGACCAAAGCCAGT
TTTCACACCGTGTCTTATTGTTTATTTGTTGCTTGTTTTTTTCGATTGTT
TTCCGACAATTGCAGACCCAGTCAAGACCACACACATGACCTGGTATACG
TATGCTTTGATCCGAAACCTTAAGCGATAAGTTAGCATAAACAGATAAAC
AAGATCAATGTGTCGGTACACCCCAACAAAAATAACCCCACCTGCGTACT
GCTCTGTGATATGATAGGTGCTTCTGCTCGGCCATCACGGCCTGCGGGAA
AGGGGGGAAGTGGAAGCAGGCGCTGGAGGTTCTGGATGCTATGCACCGCG
ATGGACCGCCTCCCAACGAT
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Coding sequence (CDS) from alignment at S-firma_F_contig10461:117..4536+

>mRNA_S-firma_F_contig10461.654.1 ID=mRNA_S-firma_F_contig10461.654.1|Name=mRNA_S-firma_F_contig10461.654.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1002bp|location=Sequence derived from alignment at S-firma_F_contig10461:117..4536+ (Sphaerotrichia firma ET2_F female)
TGCGGTCGGGGCTTGCAGTGGAAGAAGGCCCTGTCGTCGCTGGTGGAGAT
GCGGGAGGCGGGCGTCAAGGCTAACTCGTTTGTGTACTCAGCAGCGATCG
ACGCTTGTGCCAAGTGCGGTCGGGGCTTGCAGTGGAAGAAGGCCCTGTCG
TCGCTGGTGGAGATGCGGGAGGCGGGCGTCAAGGCTAACTCGTTTGTGTA
CTCAGCAGCGATCGACGCTTGTGCCAAGGGGCGACAATGGCAGAAGGCGC
TGGTCCTGCTGCGGGAGATGGAGGCTGTGGACGGGCTGCCGGGGAACTTA
ATTTGCTACAACGCCGCCGTTGACGCCTGCGGCAAGGGGCGACAATGGCA
GAAGGCGCTGGTCCTGCTGCGGGAGATGGAGGCTGTGGACGGGCTGCCGG
GGAACTTAATTTGCTACAACGCCGCCGTTGACGCCTGCGGCAAGGCGGGT
AGGCCCGGCGAAGCTCTGGCCCTCCTGAGCAAGATGCGGAAGGCGGGCAT
CAAGCCCAACGCGGTGTCGTACCTGTCGGCCATCTCGGCGTGCTCTCGCG
TCGGGGACTGGCAGCAGGCCTTGTGGCTGCTGGACGAGATGACGGTGTTC
GGGGTCCAGCCGGATCTAAAGCGGGTAGGCCCGGCGAAGCTCTGGCCCTC
CTGAGCAAGATGCGGAAGGCGGGCATCAAGCCCAACGCGGTGTCGTACCT
GTCGGCCATCTCGGCGTGCTCTCGCGTCGGGGACTGGCAGCAGGCCTTGT
GGCTGCTGGACGAGATGACGGTGTTCGGGGTCCAGCCGGATCTAAAGTGC
TTCTGCTCGGCCATCACGGCCTGCGGGAAAGGGGGGAAGTGGAAGCAGGC
GCTGGAGGTTCTGGATGCTATGCACCGCGATGGACCGCCTCCCAACGATG
TGCTTCTGCTCGGCCATCACGGCCTGCGGGAAAGGGGGGAAGTGGAAGCA
GGCGCTGGAGGTTCTGGATGCTATGCACCGCGATGGACCGCCTCCCAACG
AT
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