mRNA_S-firma_F_contig1046.649.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig1046.649.1 vs. uniprot
Match: D8LSQ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSQ3_ECTSI) HSP 1 Score: 491 bits (1264), Expect = 5.590e-158 Identity = 349/705 (49.50%), Postives = 392/705 (55.60%), Query Frame = 3
Query: 72 LQQRRSF--SSSTGERRSRXXXQASRPRTSSVWEGVLLVVLLIVTCINLYTYGDRRERFQRAQAGV-----GAKPATSKSLRLPAPGDDRRYNYNDVGGGGRGGEL---------RTGGGTIVGTTAQNLAEHVYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPATRPERPTPLGRDRPLQIMAAAP-----------GASNLRWPAAAVGGDXXXXXXXEEGSSWRPGPGASAAEADTVSQFACSLTEVDYAPGLETRSNQEQLLLLK------KPWPTSGPCVISCSPPPSPLXXXXXXXXXPES-GPSSSLGR--------------------FKYCARAVRACELYQECTHVLMPPPASSEGTAGNXXXXXXXXXXXXXGFATLMHRPTEDGSMASVEAAAXXXXXXXXXXXXXXXXXXXXXSDGGFTLDTKPRTYYVVSFGGSGSKMLGGWLSERGKGMVKKVFHIHDPRPADQLFAKVARKSVTSRGMVXXXXXXXXXXXXXXXXXVDGAAVQDVDSYRVVLIFKDPAEALVSRYFYNHCKNIRGAECGATQADFPSLERYAEESGDRLHMQTFYDNYCDPDTVDKAAARNGG----RRRNYPVVCVNYHKMWDNKEALVRALGLPAGEASKLPERTETVRNDQTSAARGEPFTLAMRERLRRKHASLSEKVFGAPAVAIV 2012
+QQRRS SSSTG R + S P + WE + + LL++T +N+ TY +RR +FQ A GV SLR PAP + ++ GG GG R GG T + A XXXXXXXXXXXXXX XXXXXX PTPLGRD PLQ+ P G ++ RWP+ G G S AE+ V F CSLTE D APG R KPW TSGPCV+SCSP XXX E+ GP +G + C RA RAC LYQECTHV++P + GFA LMHR DGSM VEAAAXXXXX GGFTLD KPRTYYVVSFGGSGSKMLGGWLSERGKGMVK+VFHIHDPRP D+LFAKVAR+ V++ G +G AV DVD+YRVVLIFKDPAEALVSRYFYNHCKN+RGA CG+T ADFPSLE YAEESGDRLHM+ FYDNYC+P TV A A G RRNYPVVCVNYHKMWDNKEALV+ALGLPAGEASKLP RTETVRND+TSA RGEPFTLA+RERLRRKHASLS+KVF +PAVAIV
Sbjct: 1 MQQRRSLPPSSSTGRRGRQPQTPRSHPLCT--WEVLGVATLLVLTIVNVCTYSERRAKFQLAHGGVLHTSDDDNGLPEHSLRPPAP----QGKVSERTGGSEGGAGPDIYVASVGRPGGNVDASGTKRPDA---VGGXXXXXXXXXXXXXXEETMVGSGGWKWTNKTTGPVRPLSXXXXXXXXXXXXXPTPLGRDAPLQVAVLRPANEAGGGSSGTGMNSWRWPSDVGAGSGGSIG------------GVSEAES-AVGHFPCSLTEADDAPGPGHRGXXXXXXXXXXXXQRLKPWSTSGPCVVSCSPXXXXXXXXSGARQLVEARGPEDRIGXXXXXXXXXXXXXXXXXXXXGLERCERAARACNLYQECTHVMLPLGGGGGDGHSSGSGNRSGDKRNGGGFAVLMHRAARDGSMDGVEAAAXXXXXVSHAAGAGNGWSGPR---GGFTLDAKPRTYYVVSFGGSGSKMLGGWLSERGKGMVKEVFHIHDPRPGDKLFAKVARRGVSAGGGGGRGKDFRGYDFPEGDFPSEGTAVHDVDNYRVVLIFKDPAEALVSRYFYNHCKNLRGARCGSTPADFPSLESYAEESGDRLHMEAFYDNYCNPATVAGAGAGASGAIKKERRNYPVVCVNYHKMWDNKEALVKALGLPAGEASKLPTRTETVRNDRTSAERGEPFTLAVRERLRRKHASLSKKVFESPAVAIV 680
BLAST of mRNA_S-firma_F_contig1046.649.1 vs. uniprot
Match: A0A7S4A8H3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A8H3_9STRA) HSP 1 Score: 183 bits (464), Expect = 2.320e-46 Identity = 104/251 (41.43%), Postives = 141/251 (56.18%), Query Frame = 3
Query: 1266 TKPRTYYVVSFGGSGSKMLGGWLSERGKGMVKKVFHIHDPRPADQL--FAKVARKSVTSRGMVXXXXXXXXXXXXXXXXXVDGAAVQDVDSYRVVLIFKDPAEALVSRYFYNHCKNIRGAECGATQADFPSLERYAEESGDRLHMQTFYDNYCDPDTVDKAAARNGGRRRNYPVVCVNYHKMWDNKEALVRALGLPAGEASKLPERTETVRNDQTSAARG-EPFTLAMRERLRRKHASLSEKVFGAPAVAI 2009
TKPRTY VVS+GG GSKML GWL++ + K V+H HD RP D L R S R + V D+D YRV+ IFKDP EA+VSR+ Y HCK++ G +CG Q+ FP L+ YA++ DR+ + F++ Y P + YP+V +NYHK+W N+EA++ ALGLPA AS PERTETVRND T+A + + A R L R + + E++ PAV++
Sbjct: 214 TKPRTYIVVSYGGCGSKMLAGWLAQLPRKYAKHVYHFHDKRPPDILRELPPPPRPSTRERDF------RARRFPGGGRFRTETKPVADLDDYRVLYIFKDPVEAMVSRFGYGHCKHLDG-DCGVEQS-FPKLDVYAQQGVDRMGLLAFFEAYTSP--------------QKYPIVALNYHKLWQNREAVMSALGLPASLASSFPERTETVRNDLTAAGENNQAHSEATRRGLDRMYGRILERIRALPAVSV 442
BLAST of mRNA_S-firma_F_contig1046.649.1 vs. uniprot
Match: A0A7S3NGV2_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NGV2_9STRA) HSP 1 Score: 156 bits (395), Expect = 6.170e-37 Identity = 97/272 (35.66%), Postives = 141/272 (51.84%), Query Frame = 3
Query: 1269 KPRTYYVVSFGGSGSKMLGGWLS--ERGKGM--------------------VKKVFHIHDPRPADQLFA-KVARKSVTSRGMVXXXXXXXXXXXXXXXXXVDGAAVQDVDSYRVVLIFKDPAEALVSRYFYNHCKNIRGAECGATQADFPSLERYAEESGDRLHMQTFYDNYCDPDTVDKAAARNGGRRRNYPVVCVNYHKMWDNKEALVRALGLPAGEASKLPERTETVRNDQTSAARG-EPFTLAMRERLRRKHASLSEKVFGAPAVAIV 2012
KPRTY V+S+GG GSKML GWLS E + VK+V+H+HD P L R T++ + +++ D YR++ IFKDP EALVSRY Y HC ++ G CG + FP L+ YA D +++ +F+ NY P+ R++P++ +NYHK+WDN +AL+ ALGLP AS P+RTETVRND T+ A G + + A R+ L + + + +++ PAV +V
Sbjct: 231 KPRTYVVISYGGCGSKMLAGWLSSLEAQSAVKRPSRKQQPITKKSATFPKYVKRVYHLHDAHPPLTLRELPPPRAPPTNQKDFRARRFPGGGHFRSDTPLIPESSLDD---YRLLFIFKDPVEALVSRYGYGHCLHL-GGNCGTNERTFPKLDAYARRGIDNMNILSFFKNYVTPNP-----------NRSFPIILLNYHKLWDNLDALMAALGLPPQLASTFPQRTETVRNDLTAQAEGNQAHSEATRQYLDKIYDPIIQRIRDLPAVTVV 487
BLAST of mRNA_S-firma_F_contig1046.649.1 vs. uniprot
Match: A0A7S2DQ38_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DQ38_9STRA) HSP 1 Score: 142 bits (358), Expect = 9.950e-35 Identity = 86/232 (37.07%), Postives = 123/232 (53.02%), Query Frame = 3
Query: 1326 GWLSERGKGMVKKVFHIHDPRPADQL--FAKVARKSVTSRGMVXXXXXXXXXXXXXXXXXVDGAAVQDVDSYRVVLIFKDPAEALVSRYFYNHCKNIRGAECGATQADFPSLERYAEESGDRLHMQTFYDNYCDPDTVDKAAARNGGRRRNYPVVCVNYHKMWDNKEALVRALGLPAGEASKLPERTETVRNDQTSAARGEP-FTLAMRERLRRKHASLSEKVFGAPAVAIV 2012
G+LS+ K V+HIHD P L K ++ S G D V D++ YRVV ++KDP EALVSRY + HC +I+G +CG +A +P L++YA++ DR+ ++ ++ + P+ R +P+V +NYH++WDN A++ ALGLPA AS P RTETVRND T + G T R L+R +A L +V PAV IV
Sbjct: 2 GFLSQLPKAHKTYVYHIHDRSPPKLLRQMPKPPPPTIRSGG----NDFRSGRFPGGSKFKRDTEPVDDLNEYRVVYMYKDPVEALVSRYGWGHCNHIQG-DCGDAEAQWPKLDKYAKKQVDRMRLKDHFNAFHHPEEP-----------REFPIVAINYHRLWDNIPAVLTALGLPASLASTFPPRTETVRNDMTGKSEGNAAHTEETRSGLKRMYAELQTEVLSNPAVLIV 217
BLAST of mRNA_S-firma_F_contig1046.649.1 vs. uniprot
Match: A0A7S2RTZ4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RTZ4_9STRA) HSP 1 Score: 120 bits (301), Expect = 8.500e-28 Identity = 64/134 (47.76%), Postives = 85/134 (63.43%), Query Frame = 3
Query: 1521 DVDSYRVVLIFKDPAEALVSRYFYNHCKNIRGAECGATQADFPSLERYAEESGDRLHMQTFYDNYCDPDTVDKAAARNGGRRRNYPVVCVNYHKMWDNKEALVRALGLPAGEASKLPERTETVRNDQTSAARGE 1922
D+D YRV+ I+KDP EALVSRY Y HC +I+G +CG ++ +P L++YA DR+ + + NY P + R++PVV VNYHK+WDN AL++ALGLP P RTETVRND T A+GE
Sbjct: 24 DLDKYRVLYIYKDPIEALVSRYGYGHCMHIQG-DCGEERS-WPKLDKYAAAQQDRMKLMAHFQNYMHPSEM-----------RSFPVVAVNYHKLWDNLPALMQALGLPDELIKTFPPRTETVRNDLT--AKGE 142
BLAST of mRNA_S-firma_F_contig1046.649.1 vs. uniprot
Match: A0A7S0TAQ6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chrysocystis fragilis TaxID=1411660 RepID=A0A7S0TAQ6_9STRA) HSP 1 Score: 116 bits (291), Expect = 1.170e-26 Identity = 57/123 (46.34%), Postives = 77/123 (62.60%), Query Frame = 3
Query: 1503 DGAAVQDVDSYRVVLIFKDPAEALVSRYFYNHCKNIRGAECGATQADFPSLERYAEESGDRLHMQTFYDNYCDPDTVDKAAARNGGRRRNYPVVCVNYHKMWDNKEALVRALGLPAGEASKLP 1871
D V+D+D++RV+ IFKDP EALVSRY Y HC ++ G +CG +A FP L+ YA DR+ + +F+D Y DP R++PV+ +NYHK+WDN AL+RALGLP A P
Sbjct: 34 DTPPVRDLDAFRVLFIFKDPVEALVSRYGYGHCLHL-GGDCGPNEAAFPKLDAYAASGRDRMGILSFFDAYVDPPPS-----------RSFPVLLLNYHKLWDNLPALMRALGLPPDAARSFP 144
BLAST of mRNA_S-firma_F_contig1046.649.1 vs. uniprot
Match: A0A7S2CP49_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CP49_9STRA) HSP 1 Score: 105 bits (263), Expect = 4.580e-23 Identity = 55/142 (38.73%), Postives = 80/142 (56.34%), Query Frame = 3
Query: 1590 YNHCKNIRGAECGATQADFPSLERYAEESGDRLHMQTFYDNYCDPDTVDKAAARNGGRRRNYPVVCVNYHKMWDNKEALVRALGLPAGEASKLPERTETVRNDQTSAARGEP-FTLAMRERLRRKHASLSEKVFGAPAVAIV 2012
+ HC +I+G +CG + A FP L++YA+ DR+ + ++ + P T RNYPVV +NYHK+WDN A++ A GLP K P RTETVRND T A G T R L+R ++++ + + PAV +V
Sbjct: 1 HGHCTHIQG-DCGPSDAQFPKLDKYADMGQDRMRLNDHFNAFMRPSTP-----------RNYPVVAINYHKLWDNLPAVMEAFGLPQEFVQKFPPRTETVRNDLTGKAEGNAAHTEKTRNGLKRMYSTILDDIRNNPAVRVV 130
BLAST of mRNA_S-firma_F_contig1046.649.1 vs. uniprot
Match: F2UND3_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UND3_SALR5) HSP 1 Score: 100 bits (250), Expect = 2.510e-19 Identity = 61/210 (29.05%), Postives = 96/210 (45.71%), Query Frame = 3
Query: 1254 FTLDTKPRTYYVVSFGGSGSKMLGGWLSERGKGMVKKVFHIHDPRPADQLFAKVARKSVTSRGMVXXXXXXXXXXXXXXXXXVDGAAVQDVDSYRVVLIFKDPAEALVSRYFY----NHCKNIRGAECGATQADFPSLERYAEESGDRLHMQTFYDNYCDPDTVDKAAARNGGRRRNYPVVCVNYHKMWDNKEALVRALGLPAGEASKLP 1871
F D +P ++V+S+GGSGSK +L + GK +HIHDP P ++L + T+ + D+ +RV++ +DP EA S NHC+N+ ++ S E Y + D + FY + DP+ ++RNY +V +N+HKMWD+KE ++RALGLP + P
Sbjct: 98 FRADQRPVHFFVISYGGSGSKTFWHFLRKYGKS-----YHIHDPHPVEELHMPAPTHTDTAMSVSKHKIP-----------------TADLHLFRVIVQVRDPCEAACSHLHLGLNKNHCRNMLNSKSHCLNGP-QSYEEYVQRGEDHIGFDRFYQAWMDPEKA---------KQRNYNIVILNFHKMWDHKEEVIRALGLPPSAINDFP 275
BLAST of mRNA_S-firma_F_contig1046.649.1 vs. uniprot
Match: A0A2D6LX15_9BACT (Uncharacterized protein n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A2D6LX15_9BACT) HSP 1 Score: 70.1 bits (170), Expect = 1.210e-9 Identity = 52/203 (25.62%), Postives = 82/203 (40.39%), Query Frame = 3
Query: 1275 RTYYVVSFGGSGSKMLGGWLSERGKGMVKKVFHIHDPRPADQLFAKVARKSVTSRGMVXXXXXXXXXXXXXXXXXVDGAAVQDVDSYRVVLIFKDPAEALVSRYFYN--HCKNIRGAECGATQADFPSLERYAEESGDRLHMQTFYDNYCDPDTVDKAAARNGGRRRNYPVVCVNYHKMWDNKEALVRALGLPAGEASKLPER 1877
+ Y+V S+GG S L +L G +HIH RP + L V+RK V ++D +Y V+ +F PA ++ SR ++ H ++I + S E Y D + ++F+ NY G RNY ++ VN HK+W++ E+ LP E K P+R
Sbjct: 7 KRYFVCSYGGCASWTLRRFLQHYGT-----AYHIHSCRPPEFLTLPVSRKPV---------HRLFNYGVKEHFGSARKDRIRDTSNYSVIYLFVKPAYSIFSRKAFSQRHLRSIGVERKNLRKLRKLSREEYITSGEDLIDYESFFHNYV-----------TRGINRNYDIIAVNVHKLWNDLESFFTLTDLPLSELEKFPQR 184 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1046.649.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1046.649.1 >prot_S-firma_F_contig1046.649.1 ID=prot_S-firma_F_contig1046.649.1|Name=mRNA_S-firma_F_contig1046.649.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=649bp MLQQRRSFSSSTGERRSRQQQQASRPRTSSVWEGVLLVVLLIVTCINLYTback to top mRNA from alignment at S-firma_F_contig1046:2610..8153+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1046.649.1 ID=mRNA_S-firma_F_contig1046.649.1|Name=mRNA_S-firma_F_contig1046.649.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=5544bp|location=Sequence derived from alignment at S-firma_F_contig1046:2610..8153+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1046:2610..8153+ >mRNA_S-firma_F_contig1046.649.1 ID=mRNA_S-firma_F_contig1046.649.1|Name=mRNA_S-firma_F_contig1046.649.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=3894bp|location=Sequence derived from alignment at S-firma_F_contig1046:2610..8153+ (Sphaerotrichia firma ET2_F female)back to top |