mRNA_S-firma_F_contig10001.64.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10001.64.1
Unique NamemRNA_S-firma_F_contig10001.64.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10001.64.1 vs. uniprot
Match: A0A5A8CS72_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CS72_CAFRO)

HSP 1 Score: 207 bits (528), Expect = 1.030e-62
Identity = 134/279 (48.03%), Postives = 167/279 (59.86%), Query Frame = 1
Query:    4 MSQLAVVTGASSGIGAALTKHFAHRGITVVACARR-LALLEAVRDACPPGSVVVCEADVRTPDGRAAIAGAAEGAPGALRYLVHNAGILGPTAPAEAIAPEDWGVVVSTNVDAPLFLTQALLPQLRKSGPGARILHIGSGAAKSPVVGWTAYCVTKAAFAMLHSCMQEELKAGPVPVLVGSVRPGIIDTPMQEEVRGSSPTAFPALDTFVGFKTLADERAAAAAAPTAPGPHTPPTDALDTPENVAYFLHWLLTVASDEFFVKEEHDIRDDSHHGEWLV 837
            +S++A++TGA +GIG AL    A  G+ ++A  RR   L E  RDA     V    ADV + DGRAAI  AA+G  G + +LV NAG + P A    I P +W    + NV  PLFL QAL  +LR+  PGAR+LHIGSGAA   V GWTAYC TKAAF  ++  M  EL+  P  VLVGSVRPGI++TPMQ  +R +   A P +  F G     +  AAA      PG   PP+ +LDTPENVA FL +LLT + D+ F  EE DIRD SHH  W  
Sbjct:    6 VSRVAIITGAGTGIGRALALRLAADGVHILAVGRRETPLTELQRDAGGAEHVTPVVADVASADGRAAIVSAAKGH-GPIDFLVQNAGTIAPIAALADIKPSEWEQAFAVNVHGPLFLLQALNERLRR--PGARVLHIGSGAASKAVGGWTAYCATKAAFLSVYRSMAAELR--PEGVLVGSVRPGIVNTPMQVAIRDADEAAMPDVSFFKGLHAAMEPGAAA------PG-SAPPSGSLDTPENVAAFLSFLLTRSGDDEFGAEEWDIRDASHHHRWTT 272          
BLAST of mRNA_S-firma_F_contig10001.64.1 vs. uniprot
Match: A0A7S2N1Q3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N1Q3_9STRA)

HSP 1 Score: 194 bits (492), Expect = 2.060e-57
Identity = 124/281 (44.13%), Postives = 158/281 (56.23%), Query Frame = 1
Query:    1 HMSQLAVVTGASSGIGAALTKHFAHRGITVVACARRLALLEAVRDACPPGSVVVCEADVRTPDGRAAIAGAAEGAPGA-LRYLVHNAGILGPTAPAEAIAPEDWGVVVSTNVDAPLFLTQALLPQLRKS---GPGARILHIGSGAAKSPVVGWTAYCVTKAAFAMLHSCMQEELKAGPVPVLVGSVRPGIIDTPMQEEVRGSSPTAFPALDTFVGFKTLADERAAAAAAPTAPGPHTPPTDALDTPENVAYFLHWLLTVASDEFFVKEEHDIRDDSHHGEW 831
             M  ++V+TG  +GIGAAL K  A  G  V+   RR   LE+ + A  P S+    AD+ T +GR A+  A + AP   L  LVHNAG L P  P   I  ++W   ++ NVDAPLFLTQALLP+L+ +   G GAR+LHI SGA++ P  GW AYC +KAA  M++  +++ELK  P+ + VGSVRPG++DTPMQ+ VR S P AFP L  F   K                      T  L  PE VA FL WLL   + E F  EE DIRD  H   W
Sbjct:    6 EMVGVSVITGGGTGIGAALAKRLASHGQRVLIVGRRSGPLESTK-ASNPESIQYVVADIATTEGRHAVVQAVDTAPYTHLSSLVHNAGTLDPVKPLSDITEKEWRDAMAINVDAPLFLTQALLPKLKANPNDGVGARVLHISSGASQKPYRGWGAYCTSKAALNMVYRVLRDELK--PLNIHVGSVRPGVVDTPMQDNVRESDPQAFPDLPRFKNLKE---------------------TGKLLLPEQVAIFLDWLLHKTTPEEFTHEEWDIRDHQHQHRW 262          
BLAST of mRNA_S-firma_F_contig10001.64.1 vs. uniprot
Match: A0A2K9L6N0_9RHOO (Uncharacterized protein n=3 Tax=Rhodocyclales TaxID=206389 RepID=A0A2K9L6N0_9RHOO)

HSP 1 Score: 192 bits (487), Expect = 9.730e-57
Identity = 122/276 (44.20%), Postives = 155/276 (56.16%), Query Frame = 1
Query:    4 MSQLAVVTGASSGIGAALTKHFAHRGITVVACARRLALLEAVRDACPPGSVVVCEADVRTPDGRAAIAGAAEGAPGALRYLVHNAGILGPTAPAEAIAPEDWGVVVSTNVDAPLFLTQALLPQLRKSGPGARILHIGSGAAKSPVVGWTAYCVTKAAFAMLHSCMQEELKAGPVPVLVGSVRPGIIDTPMQEEVRGSSPTAFPALDTFVGFKTLADERAAAAAAPTAPGPHTPPTDALDTPENVAYFLHWLLTVASDEFFVKEEHDIRDDSHHGEW 831
            ++ +A+VTGA SGIGAALT     RG+TV+A  RR ALL+A+  A  PG V     D+ T +  AA+  A    P  L YLVHNA +LGPT P   +A   +     TN+ APLFLTQALLP +     GARILH+ SGAA  P+VGW  YC+ K+A  ML+ C +EEL+A    +LVGS RPG++DTPMQ E+R      FP +DTF   K                         L +P+ V  FL WLL  A  E F  +E+DIRD +    W
Sbjct:   11 LNSIAIVTGAGSGIGAALTAQLVARGMTVLAIGRRAALLDALA-ARHPGQVEPLAVDLSTEEAPAAVRAALGDRP--LHYLVHNAAVLGPTGPLAGVARAAFRQHWETNLAAPLFLTQALLPSM---AAGARILHVSSGAAHRPLVGWGPYCIAKSALHMLYQCWREELRAR--HILVGSARPGVVDTPMQAEIRALDEATFPEVDTFRKLKDNGQ---------------------LSSPDTVGRFLTWLLLEADAEQFCAQENDIRDAALARRW 257          
BLAST of mRNA_S-firma_F_contig10001.64.1 vs. uniprot
Match: A0A2E2WGM0_9DELT (Short-chain dehydrogenase n=3 Tax=Proteobacteria TaxID=1224 RepID=A0A2E2WGM0_9DELT)

HSP 1 Score: 188 bits (477), Expect = 2.440e-55
Identity = 121/276 (43.84%), Postives = 158/276 (57.25%), Query Frame = 1
Query:    4 MSQLAVVTGASSGIGAALTKHFAHRGITVVACARRLALLEAVRDACPPGSVVVCEADVRTPDGRAAIAGAAEGAPGALRYLVHNAGILGPTAPAEAIAPEDWGVVVSTNVDAPLFLTQALLPQLRKSGPGARILHIGSGAAKSPVVGWTAYCVTKAAFAMLHSCMQEELKAGPVPVLVGSVRPGIIDTPMQEEVRGSSPTAFPALDTFVGFKTLADERAAAAAAPTAPGPHTPPTDALDTPENVAYFLHWLLTVASDEFFVKEEHDIRDDSHHGEW 831
            M + A++TGA +GIG AL++     G+ V+A  RR   LE++R A  P +VV   ADV T  GR AIA A  GA   L  LVHNA +L P  P   ++ E W    + N++ PLFLTQALLP+L     G+RILHI SGAA + + GW AYC++KAA  M + C + EL+A    VLVGSVRPG++DTPMQE +R    TAFP ++ F  FK   +                     L+ PE VA FL WLL  A +  F  +E DIRD++    W
Sbjct:    1 MKKTALITGAGTGIGRALSEFLIEAGLQVIAVGRRPQPLESLR-ASHPDAVVAVSADVGTEAGRLAIAEAVSGA--VLNLLVHNAAVLEPAGPLAEMSLEAWREHQAINLEGPLFLTQALLPRLES---GSRILHISSGAAHTAIQGWAAYCMSKAALHMGYQCWRNELQAR--SVLVGSVRPGVVDTPMQEAIRDFDETAFPLVEKFRAFKADGE---------------------LEPPERVACFLGWLLLKAPEATFTAQELDIRDETLWSNW 247          
BLAST of mRNA_S-firma_F_contig10001.64.1 vs. uniprot
Match: A0A2E3MJH9_9GAMM (Short-chain dehydrogenase n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2E3MJH9_9GAMM)

HSP 1 Score: 187 bits (476), Expect = 4.120e-55
Identity = 120/277 (43.32%), Postives = 155/277 (55.96%), Query Frame = 1
Query:    4 MSQLAVVTGASSGIGAALTKHFAHRGITVVACARRLALLEAVRDACPPGSVVVCEADVRTPDGRAAIAGAAEGAPGALRYLVHNAGILGPTAPAEAIAPEDWGVVVSTNVDAPLFLTQALLPQLRKSGPGARILHIGSGAAKSPVVGWTAYCVTKAAFAMLHSCMQEELKAGPVPVLVGSVRPGIIDTPMQEEVRGSSPTAFPALDTFVGFKTLADERAAAAAAPTAPGPHTPPTDALDTPENVAYFLHWLLTVASDEFFVKEEHDIRDDSHHGEWL 834
            MS+++VVTGA SGIG AL+   A    TV+A  RR   L+ +++  P   V +  ADV  P+ R AIA         + YLVHNAG+L P A    +   DW   ++ NV+APLFLTQALLPQL     G RILHI SGAA  P+ GW AYC +KAAF ML  C++EEL++    + +GSVRPG++DTP+Q+ +R      FPAL  F   K                       + L  P   A FL+W+LT+   E F +EE DI D SHH  WL
Sbjct:    1 MSKVSVVTGAGSGIGRALSVLMAENDHTVIAIGRREQPLQQLKNHYPK-RVQIIPADVSKPENRDAIASVISKYSN-IDYLVHNAGVLEPVAELRDVDLHDWRAHMAINVEAPLFLTQALLPQLA----GGRILHISSGAAHRPIHGWGAYCTSKAAFYMLFQCLREELQS--FNIGIGSVRPGVVDTPIQDRIRQLDEAVFPALKDFQDLKEY---------------------NKLIPPATCALFLYWILTMTDAENFTREEWDIYDTSHHHHWL 248          
BLAST of mRNA_S-firma_F_contig10001.64.1 vs. uniprot
Match: UPI0016582CCD (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Thauera sp. CAU 1555 TaxID=2767595 RepID=UPI0016582CCD)

HSP 1 Score: 179 bits (453), Expect = 9.250e-52
Identity = 120/276 (43.48%), Postives = 147/276 (53.26%), Query Frame = 1
Query:    4 MSQLAVVTGASSGIGAALTKHFAHRGITVVACARRLALLEAVRDACPPGSVVVCEADVRTPDGRAAIAGAAEGAPGALRYLVHNAGILGPTAPAEAIAPEDWGVVVSTNVDAPLFLTQALLPQLRKSGPGARILHIGSGAAKSPVVGWTAYCVTKAAFAMLHSCMQEELKAGPVPVLVGSVRPGIIDTPMQEEVRGSSPTAFPALDTFVGFKTLADERAAAAAAPTAPGPHTPPTDALDTPENVAYFLHWLLTVASDEFFVKEEHDIRDDSHHGEW 831
            MS +A+VTGA SGIGAALT     RG TV+A  RR ALL+A+  A   G V     DV   D  AA+  A  G   A  YLVHNA +LGP  P   +    +     TN+ APLFLTQALLP L     GARILH+ SGAA  P+ GW  YC++K+A  ML+ C +EEL+     +LVGS RPG++DTPMQ E+R     AFP +D F   K                         L +P+ V  FL WLL  A    F + E+DIRD      W
Sbjct:    1 MSSIAIVTGAGSGIGAALTAQLVARGCTVLAIGRRAALLDALA-ARHAGKVETLALDVSAEDAPAAVLAALNGR--APHYLVHNAAVLGPAGPLAEVQRAAFRQHWETNLAAPLFLTQALLPVL---AAGARILHVSSGAAHHPLAGWGPYCISKSALHMLYQCWREELRER--NILVGSARPGVVDTPMQAEIRALDEAAFPDVDAFRKLKENGQ---------------------LTSPDTVGRFLAWLLLDADAAQFREHENDIRDAELARRW 247          
BLAST of mRNA_S-firma_F_contig10001.64.1 vs. uniprot
Match: A0A7R9WVQ2_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WVQ2_9STRA)

HSP 1 Score: 178 bits (452), Expect = 1.230e-51
Identity = 111/271 (40.96%), Postives = 148/271 (54.61%), Query Frame = 1
Query:   19 VVTGASSGIGAALTKHFAHRGITVVACARRLALLEAVRDACPPGSVVVCEADVRTPDGRAAIAGAAEGAPGALRYLVHNAGILGPTAPAEAIAPEDWGVVVSTNVDAPLFLTQALLPQLRKSGPGARILHIGSGAAKSPVVGWTAYCVTKAAFAMLHSCMQEELKAGPVPVLVGSVRPGIIDTPMQEEVRGSSPTAFPALDTFVGFKTLADERAAAAAAPTAPGPHTPPTDALDTPENVAYFLHWLLTVASDEFFVKEEHDIRDDSHHGEW 831
            VVTGA SG+G A+  HF+  G  V+   RRLA L+ +      GS+ +  ADV   +GR AI  A       ++YL+HNAG+L P  P   + P D+   +S N++APLF TQ L P+ + +    R+LH+ SGAA SP  GW  YC +KAA  M++  +  ELKA    + VGSVRPG++DTPMQ  VR +    FP L  FV  K                      ++ L  PE VA F+ WLLT  + + F  EE DIRDD H G+W
Sbjct:    7 VVTGAGSGLGRAMAVHFSQNGFPVLGIGRRLAPLQEIES----GSISILSADVSEQEGRQAIYDAIPTGDH-IKYLIHNAGVLEPIQPLMDVKPADFRKHMSINLEAPLFCTQMLAPKFQANS--TRVLHVSSGAAVSPYEGWGTYCTSKAALNMVYRVLDLELKAK--GIRVGSVRPGVVDTPMQSVVRSADEAVFPNLQRFVDLKE---------------------SNQLLPPEKVARFMFWLLTETTPDEFAAEEWDIRDDRHQGKW 247          
BLAST of mRNA_S-firma_F_contig10001.64.1 vs. uniprot
Match: F0YRH3_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YRH3_AURAN)

HSP 1 Score: 178 bits (452), Expect = 1.560e-51
Identity = 118/271 (43.54%), Postives = 143/271 (52.77%), Query Frame = 1
Query:   19 VVTGASSGIGAALTKHFAHRGITVVACARRLALLEAVRDACPPGSVVVCEADVRTPDGRAAIAGAAEGAPGALRYLVHNAGILGPTAPAEAIAPEDWGVVVSTNVDAPLFLTQALLPQLRKSGPGARILHIGSGAAKSPVVGWTAYCVTKAAFAMLHSCMQEELKAGPVPVLVGSVRPGIIDTPMQEEVRGSSPTAFPALDTFVGFKTLADERAAAAAAPTAPGPHTPPTDALDTPENVAYFLHWLLTVASDEFFVKEEHDIRDDSHHGEW 831
            VVTGA SGIG A       RG+ VV   RR A L   R  C  G   V  ADV T DGRAA+A AA  +      +VHNA  +G TAP  A+    W   ++TNV+ PLFLTQALLP L   G G+R+LH+ SGAA     G  AYC +KAA   ++  ++ EL  GP  VLVGS  PG+ DTPMQ  +    P A      F G +        A  AP       PP   LD PENVA F  WLL     + FV ++ DI+D +HH  W
Sbjct:    1 VVTGAGSGIGRATAVEICRRGVRVVGVGRRAAALAETRTVCGDGFTAVA-ADVGTEDGRAAVAAAARASTPRKTVVVHNAAAVGETAPLGALTLGGWRAAMATNVEGPLFLTQALLPGL---GAGSRVLHVSSGAAHGGAEGLAAYCASKAALKSVYESLRGEL--GPA-VLVGSAMPGVADTPMQRALVAELPAAHAMRPYFEGLR--------AEKAPAGGAGRPPPAAGLDAPENVAAFFAWLLFDCPADEFVSKDWDIQDAAHHARW 256          
BLAST of mRNA_S-firma_F_contig10001.64.1 vs. uniprot
Match: A0A7S4JEB1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JEB1_9STRA)

HSP 1 Score: 174 bits (440), Expect = 8.740e-50
Identity = 111/266 (41.73%), Postives = 152/266 (57.14%), Query Frame = 1
Query:   13 LAVVTGASSGIGAALTKHFAHRGITVVACARRLALLEAVRDACPPGSVVVCEADVRTPDGRAAIAGAAEGAPGALRYLVHNAGILGPTAPAEAIAPEDWGVVVSTNVDAPLFLTQALLPQLRKSGPGARILHIGSGAAKSPVVGWTAYCVTKAAFAMLHSCMQEELKAGPVPVLVGSVRPGIIDTPMQEEVRGSSPTAFPALDTFVGFKTLADERAAAAAAPTAPGPHTPPTDALDTPENVAYFLHWLLTVASDEFFVKEEHDIRD 810
            L++VTG  +GIGAAL++  A RG  V+   RRL  LE  R + P G++ +  ADV T +GR A+  A  G    +  LVHNAG+L P  P   +  ++W   +STN+DAPLFLTQA+LP++ + G   RILHI SGAAKS   GW AYCV+KA   M++  + +EL+  P  + VGSVRPG++DTPMQ+ VR +    FP L  F+  K                      + +L  P + A F+ WLL     E F  +E DIR+
Sbjct:    5 LSIVTGGGTGIGAALSRRLAARG-PVLIVGRRLGPLEETRKSDPHGNIRIVAADVSTAEGRDAVLDAVAGKE-LVSALVHNAGMLEPVMPLAEVGAKEWRNAISTNLDAPLFLTQAVLPRMSRGG---RILHISSGAAKSAYEGWGAYCVSKAGLNMMYRVLAKELE--PRGIYVGSVRPGVVDTPMQDHVREADERVFPMLAKFLTLKE---------------------SGSLMKPADTARFVDWLLNGVDGEEFSAQEWDIRE 242          
BLAST of mRNA_S-firma_F_contig10001.64.1 vs. uniprot
Match: UPI001EE871D4 (SDR family NAD(P)-dependent oxidoreductase n=3 Tax=Ectothiorhodospiraceae TaxID=72276 RepID=UPI001EE871D4)

HSP 1 Score: 172 bits (437), Expect = 2.840e-49
Identity = 106/276 (38.41%), Postives = 150/276 (54.35%), Query Frame = 1
Query:    7 SQLAVVTGASSGIGAALTKHFAHRGITVVACARRLALLEAVRDACPPGSVVVCEADVRTPDGRAAIAGAAEGAPGALRYLVHNAGILGPTAPAEAIAPEDWGVVVSTNVDAPLFLTQALLPQLRKSGPGARILHIGSGAAKSPVVGWTAYCVTKAAFAMLHSCMQEEL-KAGPVPVLVGSVRPGIIDTPMQEEVRGSSPTAFPALDTFVGFKTLADERAAAAAAPTAPGPHTPPTDALDTPENVAYFLHWLLTVASDEFFVKEEHDIRDDSHHGEW 831
            + L +VTG  SG+G AL +  A  G  V+   RR   L       P   +    AD+  P+ RA I  AA+G    +R +VHNAG+L P  P   +  E W   ++ NV+AP+FLTQ LLP++ +   G+RILHI SGAA  P +GW AYC +KAA  M++   ++EL + G   +LVGSVRPG++DTPMQ+ +R  +P  FPA+D F+  K                         L TPE+ A F+ W L    D+ F+++E +I D+ H   W
Sbjct:    6 NDLVLVTGGGSGLGRALVRGLARDGAQVLTVGRRAEPLGETASVAPE-RIRTLSADIANPEDRARIVDAAQG--WRVRAVVHNAGLLDPVGPLREVDLEAWRQAMAVNVEAPVFLTQGLLPRMER---GSRILHISSGAAHKPSMGWGAYCTSKAALFMIYQVYRDELWRDG---ILVGSVRPGVVDTPMQDHIRTQTPERFPAVDRFIKLKQNGQ---------------------LHTPEDAADFVQWTLLETGDKQFIEQEWNISDEDHAQRW 251          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10001.64.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CS72_CAFRO1.030e-6248.03Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A7S2N1Q3_9STRA2.060e-5744.13Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A2K9L6N0_9RHOO9.730e-5744.20Uncharacterized protein n=3 Tax=Rhodocyclales TaxI... [more]
A0A2E2WGM0_9DELT2.440e-5543.84Short-chain dehydrogenase n=3 Tax=Proteobacteria T... [more]
A0A2E3MJH9_9GAMM4.120e-5543.32Short-chain dehydrogenase n=1 Tax=Legionellales ba... [more]
UPI0016582CCD9.250e-5243.48SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
A0A7R9WVQ2_9STRA1.230e-5140.96Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
F0YRH3_AURAN1.560e-5143.54Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S4JEB1_9STRA8.740e-5041.73Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
UPI001EE871D42.840e-4938.41SDR family NAD(P)-dependent oxidoreductase n=3 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10001contigS-firma_F_contig10001:2359..3201 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog44056.XP_009043016.1
PFAMsadh_short
Max annot lvl2759|Eukaryota
Evalue3.5e-52
EggNOG OGsCOG1028@1|root,KOG1204@2759|Eukaryota
Descriptionsepiapterin reductase
COG categoryIQ
Hectar predicted targeting categoryother localisation
Exons1
Model size843
Cds size840
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815524.256199-CDS-S-firma_F_contig10001:2358..31981622815524.256199-CDS-S-firma_F_contig10001:2358..3198Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10001 2359..3198 -
1696949386.8100204-CDS-S-firma_F_contig10001:2358..31981696949386.8100204-CDS-S-firma_F_contig10001:2358..3198Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10001 2359..3198 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815524.266382-UTR-S-firma_F_contig10001:3198..32011622815524.266382-UTR-S-firma_F_contig10001:3198..3201Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10001 3199..3201 -
1696949386.8229337-UTR-S-firma_F_contig10001:3198..32011696949386.8229337-UTR-S-firma_F_contig10001:3198..3201Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10001 3199..3201 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10001.64.1prot_S-firma_F_contig10001.64.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10001 2359..3198 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10001.64.1

>prot_S-firma_F_contig10001.64.1 ID=prot_S-firma_F_contig10001.64.1|Name=mRNA_S-firma_F_contig10001.64.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=280bp
MSQLAVVTGASSGIGAALTKHFAHRGITVVACARRLALLEAVRDACPPGS
VVVCEADVRTPDGRAAIAGAAEGAPGALRYLVHNAGILGPTAPAEAIAPE
DWGVVVSTNVDAPLFLTQALLPQLRKSGPGARILHIGSGAAKSPVVGWTA
YCVTKAAFAMLHSCMQEELKAGPVPVLVGSVRPGIIDTPMQEEVRGSSPT
AFPALDTFVGFKTLADERAAAAAAPTAPGPHTPPTDALDTPENVAYFLHW
LLTVASDEFFVKEEHDIRDDSHHGEWLVE*
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mRNA from alignment at S-firma_F_contig10001:2359..3201-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10001.64.1 ID=mRNA_S-firma_F_contig10001.64.1|Name=mRNA_S-firma_F_contig10001.64.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=843bp|location=Sequence derived from alignment at S-firma_F_contig10001:2359..3201- (Sphaerotrichia firma ET2_F female)
CACATGTCGCAGCTGGCGGTTGTGACCGGGGCGTCGTCCGGGATTGGGGC GGCTCTCACCAAGCACTTTGCCCACCGGGGCATCACCGTGGTGGCCTGCG CCCGGCGCCTGGCGCTGCTTGAGGCCGTCCGTGACGCCTGCCCGCCTGGG AGTGTGGTTGTATGCGAAGCCGACGTGAGGACGCCCGACGGGCGCGCGGC GATTGCCGGCGCGGCGGAGGGTGCCCCTGGTGCGCTGCGGTACCTGGTGC ACAACGCCGGAATCCTGGGCCCCACCGCACCAGCGGAGGCCATTGCGCCG GAGGACTGGGGCGTGGTCGTGTCGACCAACGTTGACGCCCCCCTGTTCCT GACGCAAGCTCTGCTGCCCCAGCTGCGGAAGAGTGGCCCAGGTGCCCGCA TCCTGCACATTGGCAGCGGGGCCGCAAAGTCCCCCGTCGTCGGCTGGACG GCGTACTGCGTCACCAAGGCCGCGTTTGCCATGCTGCATTCCTGCATGCA GGAGGAGCTAAAGGCGGGCCCCGTTCCGGTGCTCGTCGGCTCCGTGCGAC CAGGCATCATCGACACCCCCATGCAGGAGGAGGTCAGGGGCAGCTCCCCC ACGGCGTTCCCCGCGTTGGACACATTTGTGGGCTTCAAAACGCTGGCAGA CGAGCGCGCGGCGGCGGCGGCGGCGCCAACGGCGCCAGGCCCTCACACGC CACCCACTGACGCGCTGGACACCCCCGAAAACGTGGCGTACTTTCTGCAC TGGTTGCTGACCGTCGCGTCAGATGAGTTCTTCGTCAAGGAGGAGCACGA CATTCGCGACGACAGCCACCATGGGGAGTGGCTTGTGGAGTAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10001:2359..3201-

>mRNA_S-firma_F_contig10001.64.1 ID=mRNA_S-firma_F_contig10001.64.1|Name=mRNA_S-firma_F_contig10001.64.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1680bp|location=Sequence derived from alignment at S-firma_F_contig10001:2359..3201- (Sphaerotrichia firma ET2_F female)
ATGTCGCAGCTGGCGGTTGTGACCGGGGCGTCGTCCGGGATTGGGGCGGC
TCTCACCAAGCACTTTGCCCACCGGGGCATCACCGTGGTGGCCTGCGCCC
GGCGCCTGGCGCTGCTTGAGGCCGTCCGTGACGCCTGCCCGCCTGGGAGT
GTGGTTGTATGCGAAGCCGACGTGAGGACGCCCGACGGGCGCGCGGCGAT
TGCCGGCGCGGCGGAGGGTGCCCCTGGTGCGCTGCGGTACCTGGTGCACA
ACGCCGGAATCCTGGGCCCCACCGCACCAGCGGAGGCCATTGCGCCGGAG
GACTGGGGCGTGGTCGTGTCGACCAACGTTGACGCCCCCCTGTTCCTGAC
GCAAGCTCTGCTGCCCCAGCTGCGGAAGAGTGGCCCAGGTGCCCGCATCC
TGCACATTGGCAGCGGGGCCGCAAAGTCCCCCGTCGTCGGCTGGACGGCG
TACTGCGTCACCAAGGCCGCGTTTGCCATGCTGCATTCCTGCATGCAGGA
GGAGCTAAAGGCGGGCCCCGTTCCGGTGCTCGTCGGCTCCGTGCGACCAG
GCATCATCGACACCCCCATGCAGGAGGAGGTCAGGGGCAGCTCCCCCACG
GCGTTCCCCGCGTTGGACACATTTGTGGGCTTCAAAACGCTGGCAGACGA
GCGCGCGGCGGCGGCGGCGGCGCCAACGGCGCCAGGCCCTCACACGCCAC
CCACTGACGCGCTGGACACCCCCGAAAACGTGGCGTACTTTCTGCACTGG
TTGCTGACCGTCGCGTCAGATGAGTTCTTCGTCAAGGAGGAGCACGACAT
TCGCGACGACAGCCACCATGGGGAGTGGCTTGTGGAGTAGATGTCGCAGC
TGGCGGTTGTGACCGGGGCGTCGTCCGGGATTGGGGCGGCTCTCACCAAG
CACTTTGCCCACCGGGGCATCACCGTGGTGGCCTGCGCCCGGCGCCTGGC
GCTGCTTGAGGCCGTCCGTGACGCCTGCCCGCCTGGGAGTGTGGTTGTAT
GCGAAGCCGACGTGAGGACGCCCGACGGGCGCGCGGCGATTGCCGGCGCG
GCGGAGGGTGCCCCTGGTGCGCTGCGGTACCTGGTGCACAACGCCGGAAT
CCTGGGCCCCACCGCACCAGCGGAGGCCATTGCGCCGGAGGACTGGGGCG
TGGTCGTGTCGACCAACGTTGACGCCCCCCTGTTCCTGACGCAAGCTCTG
CTGCCCCAGCTGCGGAAGAGTGGCCCAGGTGCCCGCATCCTGCACATTGG
CAGCGGGGCCGCAAAGTCCCCCGTCGTCGGCTGGACGGCGTACTGCGTCA
CCAAGGCCGCGTTTGCCATGCTGCATTCCTGCATGCAGGAGGAGCTAAAG
GCGGGCCCCGTTCCGGTGCTCGTCGGCTCCGTGCGACCAGGCATCATCGA
CACCCCCATGCAGGAGGAGGTCAGGGGCAGCTCCCCCACGGCGTTCCCCG
CGTTGGACACATTTGTGGGCTTCAAAACGCTGGCAGACGAGCGCGCGGCG
GCGGCGGCGGCGCCAACGGCGCCAGGCCCTCACACGCCACCCACTGACGC
GCTGGACACCCCCGAAAACGTGGCGTACTTTCTGCACTGGTTGCTGACCG
TCGCGTCAGATGAGTTCTTCGTCAAGGAGGAGCACGACATTCGCGACGAC
AGCCACCATGGGGAGTGGCTTGTGGAGTAG
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