mRNA_S-firma_F_contig1045.634.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1045.634.1
Unique NamemRNA_S-firma_F_contig1045.634.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig1045.634.1 vs. uniprot
Match: A0A2I6U1S5_SACJA (Subtilisin n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2I6U1S5_SACJA)

HSP 1 Score: 77.8 bits (190), Expect = 4.250e-15
Identity = 38/71 (53.52%), Postives = 46/71 (64.79%), Query Frame = 1 
Query:    1 LTPGVLPAHDDRAGAFISDLLDGLLSTSVDLHASNFWSDAALLDDEDSGHAAHPASAVRAREWRRAADVVH 213
            L+PG LPAH  +AG FI++LLD L+S S+DLH  N WSD    + E   H   PA AVR REW  AA +VH
Sbjct:  190 LSPGTLPAHSPQAGMFIAELLDDLMSDSIDLHGGNVWSDPVAANGE---HLTTPAGAVRKREWSMAATLVH 257
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BLAST of mRNA_S-firma_F_contig1045.634.1 vs. uniprot
Match: A0A2I6U1R2_SACJA (Subtilisin (Fragment) n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2I6U1R2_SACJA)

HSP 1 Score: 77.4 bits (189), Expect = 5.790e-15
Identity = 38/71 (53.52%), Postives = 45/71 (63.38%), Query Frame = 1 
Query:    1 LTPGVLPAHDDRAGAFISDLLDGLLSTSVDLHASNFWSDAALLDDEDSGHAAHPASAVRAREWRRAADVVH 213
            L+PG LPAH   AG FI++LLD L+S S+DLH  N WSD    + E   H   PA AVR REW  AA +VH
Sbjct:  190 LSPGTLPAHSPEAGMFIAELLDDLMSDSIDLHGGNVWSDPVAANGE---HLTTPAGAVRKREWSMAATLVH 257
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BLAST of mRNA_S-firma_F_contig1045.634.1 vs. uniprot
Match: D8LNG6_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNG6_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 1.080e-14
Identity = 38/71 (53.52%), Postives = 48/71 (67.61%), Query Frame = 1 
Query:    1 LTPGVLPAHDDRAGAFISDLLDGLLSTSVDLHASNFWSDAALLDDEDSGHAAHPASAVRAREWRRAADVVH 213
            LTPG L A    A +FI+ +L  L+S SVDLH++NFWSD  +  D    H + PA AVRAR+WR+AA VVH
Sbjct:  190 LTPGTLAARSSEAKSFINHMLGDLMSASVDLHSTNFWSDPGM--DGAGEHLSSPAGAVRARDWRKAASVVH 258
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BLAST of mRNA_S-firma_F_contig1045.634.1 vs. uniprot
Match: A0A6H5LIN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIN3_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 2.430e-14
Identity = 36/71 (50.70%), Postives = 49/71 (69.01%), Query Frame = 1 
Query:    1 LTPGVLPAHDDRAGAFISDLLDGLLSTSVDLHASNFWSDAALLDDEDSGHAAHPASAVRAREWRRAADVVH 213
            LTPG L A    A +FI+ +L  L+S SVDLH++NFWSD  +  D+ + H + PA A RAR+W++AA VVH
Sbjct:  190 LTPGTLAARSSEAKSFINGMLGDLMSASVDLHSTNFWSDPGM--DDAAEHLSSPAGAARARDWKQAARVVH 258
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BLAST of mRNA_S-firma_F_contig1045.634.1 vs. uniprot
Match: A0A6H5K7G6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7G6_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 4.880e-13
Identity = 37/71 (52.11%), Postives = 45/71 (63.38%), Query Frame = 1 
Query:    1 LTPGVLPAHDDRAGAFISDLLDGLLSTSVDLHASNFWSDAALLDDEDSGHAAHPASAVRAREWRRAADVVH 213
            LTP  LPA    A +FI DLL  L+S SVDLH++NFWSD  +   E   H +    AVRAR+W +AA VVH
Sbjct:  181 LTPDTLPARSAGAESFIIDLLGDLMSASVDLHSTNFWSDPVMAGGE---HLSSHGGAVRARDWSKAASVVH 248
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BLAST of mRNA_S-firma_F_contig1045.634.1 vs. uniprot
Match: A0A6H5K229_9PHAE (Subtilisin n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K229_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 8.550e-13
Identity = 37/71 (52.11%), Postives = 45/71 (63.38%), Query Frame = 1 
Query:    1 LTPGVLPAHDDRAGAFISDLLDGLLSTSVDLHASNFWSDAALLDDEDSGHAAHPASAVRAREWRRAADVVH 213
            LTP  LPA    A +FI DLL  L+S SVDLH++NFWSD  +   E   H +    AVRAR+W +AA VVH
Sbjct:  193 LTPDTLPARSAGAESFIIDLLGDLMSASVDLHSTNFWSDPVMAGGE---HLSSHGGAVRARDWSKAASVVH 260
[Close]
BLAST of mRNA_S-firma_F_contig1045.634.1 vs. uniprot
Match: A0A6H5JQT4_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQT4_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.420e-11
Identity = 36/71 (50.70%), Postives = 43/71 (60.56%), Query Frame = 1 
Query:    1 LTPGVLPAHDDRAGAFISDLLDGLLSTSVDLHASNFWSDAALLDDEDSGHAAHPASAVRAREWRRAADVVH 213
            LTPG L +    A AFISD L  L+  SVDLH++NFWSD  +   E       P  AVRAR+W +AA VVH
Sbjct:  183 LTPGTLASRSVEAEAFISDTLGDLMLASVDLHSTNFWSDQNMGGGEQLSF---PGGAVRARDWSKAASVVH 250
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1045.634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2I6U1S5_SACJA4.250e-1553.52Subtilisin n=1 Tax=Saccharina japonica TaxID=88149... [more]
A0A2I6U1R2_SACJA5.790e-1553.52Subtilisin (Fragment) n=1 Tax=Saccharina japonica ... [more]
D8LNG6_ECTSI1.080e-1453.52Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5LIN3_9PHAE2.430e-1450.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7G6_9PHAE4.880e-1352.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K229_9PHAE8.550e-1352.11Subtilisin n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A... [more]
A0A6H5JQT4_9PHAE1.420e-1150.70Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1045contigS-firma_F_contig1045:3..216 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LNG6
PFAMsPeptidase_S8
Max annot lvl2759|Eukaryota
Evalue1.78e-15
EggNOG OGsCOG1404@1|root,KOG1114@2759|Eukaryota
Descriptiontripeptidyl-peptidase activity
COG categoryO
Hectar predicted targeting categoryother localisation
Exons1
Model size215
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815579.1563344-CDS-S-firma_F_contig1045:2..2151622815579.1563344-CDS-S-firma_F_contig1045:2..215Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1045 3..215 +
1696949430.8221576-CDS-S-firma_F_contig1045:2..2151696949430.8221576-CDS-S-firma_F_contig1045:2..215Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1045 3..215 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1045.634.1prot_S-firma_F_contig1045.634.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1045 3..215 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1045.634.1

>prot_S-firma_F_contig1045.634.1 ID=prot_S-firma_F_contig1045.634.1|Name=mRNA_S-firma_F_contig1045.634.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=71bp
LTPGVLPAHDDRAGAFISDLLDGLLSTSVDLHASNFWSDAALLDDEDSGH
AAHPASAVRAREWRRAADVVH
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mRNA from alignment at S-firma_F_contig1045:3..216+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1045.634.1 ID=mRNA_S-firma_F_contig1045.634.1|Name=mRNA_S-firma_F_contig1045.634.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=214bp|location=Sequence derived from alignment at S-firma_F_contig1045:3..216+ (Sphaerotrichia firma ET2_F female)
CTGACTCCAGGGGTGCTGCCGGCGCATGATGACCGGGCGGGTGCCTTCAT
CTCCGACCTGCTCGACGGTCTGCTGTCGACATCGGTGGACCTGCACGCCA
GCAACTTCTGGTCCGACGCGGCCTTGCTGGATGACGAAGATAGCGGCCAC
GCAGCTCACCCGGCGAGCGCCGTGCGTGCTCGGGAGTGGAGGAGGGCCGC
GGACGTTGTGCACG
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Coding sequence (CDS) from alignment at S-firma_F_contig1045:3..216+

>mRNA_S-firma_F_contig1045.634.1 ID=mRNA_S-firma_F_contig1045.634.1|Name=mRNA_S-firma_F_contig1045.634.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=426bp|location=Sequence derived from alignment at S-firma_F_contig1045:3..216+ (Sphaerotrichia firma ET2_F female)
CTGACTCCAGGGGTGCTGCCGGCGCATGATGACCGGGCGGGTGCCTTCAT
CTCCGACCTGCTCGACGGTCTGCTGTCGACATCGGTGGACCTGCACGCCA
GCAACTTCTGGTCCGACGCGGCCTTGCTGGATGACGAAGATAGCGGCCAC
GCAGCTCACCCGGCGAGCGCCGTGCGTGCTCGGGAGTGGAGGAGGGCCGC
GGACGTTGTGCACCTGACTCCAGGGGTGCTGCCGGCGCATGATGACCGGG
CGGGTGCCTTCATCTCCGACCTGCTCGACGGTCTGCTGTCGACATCGGTG
GACCTGCACGCCAGCAACTTCTGGTCCGACGCGGCCTTGCTGGATGACGA
AGATAGCGGCCACGCAGCTCACCCGGCGAGCGCCGTGCGTGCTCGGGAGT
GGAGGAGGGCCGCGGACGTTGTGCAC
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