mRNA_S-firma_F_contig104.579.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig104.579.1 vs. uniprot
Match: D8LHM5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHM5_ECTSI) HSP 1 Score: 230 bits (586), Expect = 5.160e-61 Identity = 251/716 (35.06%), Postives = 322/716 (44.97%), Query Frame = 3
Query: 24 PNTNMQYFGLVGGELAVMSKVDPLGPRPASPDLWR--------------QH------------------------ADGAGGTVHAGGGLRSTPQNNSSPGTSRVGSRNGTRNRRGELFTAEEPLVPKPVDGPEPPAWLESRFGLLRESSEGGGPSAASLASVGACHGGSTTALEWTSLGVRV-----IDSESCSPTGSSGGGVMSDGDDES-----------SAFALSVTSVPSAVSDDEASEGA-------------EAMNFMPIKGARHRQAAKVMRATPKPALRKKARYRRRKRGRLQARSGXXXGEATVVPTAQPSSK--SVVAPVPEWSQREPERDAAQNPI----DNINSGNVVRKPEPEVYDVWIPQRVFQGKGLPTLKRMMGGAEPQPQRSPRSRATQAAAEDKVEGDTPTANPPNQGV-------DSPSSRDYHQLAPRQQQRKQVQATDKRCAVHHVSGPNEF--------ETDNAVPPPQAS--VRAEYPGDGTTPARPADSERPVVFFAGVTHDTKNNETEAKAKHRSGDGDDASYWSDDSRG-------GRSVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEYIDFAKRFSWRTAAEVVTQAEXXXXXXXXXXXXXXXXARGDERQDRGVTADGADEQLQQEARQQTSAXXXXXXXXL--RARERSDNAALVAVGRLRAPQSVFNPLHRTPSRPEMRR 1874
P +YFGLVGGEL VMSKVDPLGPRP+SP WR +H AD A V G G R+T ++ T GS++ +R+RRGE+FTA+EP V KPV+GP+PP W ES+ GLL E SEG +A SLAS+GA HGGS+TA G V ++ CS T ++ G + ES SAFALS S P AVSDDE SE E M GA++ +A + R K+ R R ++ R++ R G G V A+ +SK S++ ++R E ++PI N N KP+PE+YDVWI + F GKGLPT KR+ G +EP+P + ++ AAA D+ D PT P +Q + PS + H P + KRCAV +V GP +F ET V S V ++ A GV +T + + +GDG + G GR +EY D+AKRFSW+TAAEVV +AE XXXX G+ R D D XXXXXXXX RAR RSD+AA VAVGRLRAPQSVF+ +HRTPSRPEMRR
Sbjct: 63 PEYTTKYFGLVGGELGVMSKVDPLGPRPSSPGFWRATEAAVPSEATLERRHQRQARAKXXXXXXXXXXXXXXXXXADPASDAV--GVGARATWPGDAGSPTRPPGSKDSSRHRRGEVFTAQEPPVTKPVEGPDPPPWSESKLGLLCEPSEGASTTA-SLASIGAEHGGSSTATSPEDWGNAVDMVPETNNSCCSVTTNTSRGGRTGPSFESKXXXXXXXXXXSAFALSFVSAPWAVSDDEGSEQGPQARQTRCRLRANEIMLPSTAAGAKNTEAVQAARRLAALQGAKRGRRGRARQTRMRVRGGG--GHCIVESPAKLNSKVVSILQEDGGENRRGREVGITRSPIAIDSSNDNVSTSPFKPQPELYDVWIARDFFHGKGLPTGKRVRGESEPRPPKGLKA----AAAADRGSVDIPTITPASQAAKRASEDREPPSHPEQHHTRPA----AAAASAGKRCAVRYVGGPEDFTGGTASGAETREGVRAGARSPQVAGKWRAGACLRLEAARVPGATAAVTGVGLETTRVDNDRIEPSLNGDGGGDAXXXXXXXGHGNGPVLGREAEEIVDVSGDIVAWQAEEDEEEVDGREGMEDEDEEYFDYAKRFSWQTAAEVVKEAEAXXXXRSREQRRPELRT-GEVRDDMQHDTDDXXXXXXXXXXXXXXXXXXXXXXXXSERARVRSDHAAAVAVGRLRAPQSVFHRMHRTPSRPEMRR 764
BLAST of mRNA_S-firma_F_contig104.579.1 vs. uniprot
Match: A0A6H5KCJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ2_9PHAE) HSP 1 Score: 205 bits (522), Expect = 1.400e-52 Identity = 266/724 (36.74%), Postives = 326/724 (45.03%), Query Frame = 3
Query: 24 PNTNMQYFGLVGGELAVMSKVDPLGPRPASPDLWR--------------QH------------------------ADGAGGTVHAGGGLRSTPQNNSSPGTSRVGSRNGTRNRRGELFTAEEPLVPKPVDGPEPPAWLESRFGLLRESSEGGGPSAASLASVGACHGGSTTALEWTSLGVRV-----IDSESCSPT--GSSGGGV---------MSDGDDESSAFALSVTSVPSAVSDDEASEGAEAMNFMPIKGARHRQAAKVMRAT----PKPALRKKARYRRRKRGRLQARSGXXXGEA---------------------TVVPTAQPSSKSVVAPVPE---WSQREPERDAAQNPI----DNINSGNVVRKPEPEVYDVWIPQRVFQGKGLPTLKRMMGGAEPQPQRSPRSRATQAAAEDKVEGDTPTANPPNQGVDSPSSRDYHQLAPRQQQRKQVQAT----DKRCAVHHVSGPNEFETDNAV-PPPQASVRA-----EYPGDGTTPAR--PADSERPVVFFAGVTH------DTKNNETEAKAKHRSGDGDDASYWSDDSRGGRSVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDE---YIDFAKRFSWRTAAEVVTQAEXXXXXXXXXXXXXXXXARGDERQDRGVTADGADEQLQQEARQQTSAXXXXXXXXLRARERSDNAALVAVGRLRAPQSVFNPLHRTPSRPEMRR 1874
P +YFGLVGGEL VMSK+DPLGPRP+SPD WR +H AD A V G G R+ P T GS++ +R+RRGE+FTA+EP V KPV+GP+PP W ES+ GLL E SEG +AASLAS+GA HGGS+ A G V ++ CS T SSGG SAFALS P AVSDDE E +G R RQ +RA P PA K + RL A G G +V + + VV+ + + + R E ++PI N N + KP+PE+YDVWI + F KGLPT KR+ G +EP+P + ++ AAA + + PT P Q +S D R+Q K+ AT KRCAV +V GP +F A + VRA + G T AR P ++ R A VT N+ E SG GD + DD G VL DE Y D+AKRFSW+TAAEVV +A XXXXXXXXXXXXXXXX XXXXXXXX AR RSD+AA VAVGRLRAPQSVF+ +HRTPSRPEMRR
Sbjct: 75 PEYTTKYFGLVGGELGVMSKMDPLGPRPSSPDYWRATEAAVPSEATLELRHQRQARAKRRGSKTXXXXXXXXVTAADSASDAV--GVGARAPPX------TRLPGSKDSSRHRRGEVFTAQEPPVTKPVEGPDPPPWSESKLGLLCEPSEGAS-AAASLASIGAEHGGSSAATSPEDWGFVVDMVPETNNSCCSATINTSSGGRAGPIFEXXXXXXXXXXXXSAFALSFVRAPWAVSDDEGGE----------QGPRARQPRCRLRANEIVLPSPAAGAKNTEAVQVARRLAALQGAKRGRRGRAXXXXXXXXXXXXXXXXXNCIVESHGKLNSKVVSILQQDGGENCRGREVGITRSPIAIDSSNDNVSTALFKPQPELYDVWIARDFFHSKGLPTGKRVRGESEPRPPKGLKA----AAAAGRGSVNIPTITPAFQAAKR-ASEDREPPGHREQHHKRPAATAASVGKRCAVRYVGGPEDFTGRTASGAASREDVRAGARSPQVAGKCRTGARLRPPEAARVPGATAAVTGVRLEIGRVDNDRIEPGFNGDSG-GDASDTDDDDGHGSGPVLGREAEEIVDISGDIVAWQAEEEEVDGREGMEDEDEEYFDYAKRFSWKTAAEVVKEAXXXXXXXXXXXXXXXXXXXXX------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARVRSDHAAAVAVGRLRAPQSVFHRMHRTPSRPEMRR 767 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig104.579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig104.579.1 >prot_S-firma_F_contig104.579.1 ID=prot_S-firma_F_contig104.579.1|Name=mRNA_S-firma_F_contig104.579.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=623bp MVCHLYPNTNMQYFGLVGGELAVMSKVDPLGPRPASPDLWRQHADGAGGTback to top mRNA from alignment at S-firma_F_contig104:48532..50623+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig104.579.1 ID=mRNA_S-firma_F_contig104.579.1|Name=mRNA_S-firma_F_contig104.579.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2092bp|location=Sequence derived from alignment at S-firma_F_contig104:48532..50623+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig104:48532..50623+ >mRNA_S-firma_F_contig104.579.1 ID=mRNA_S-firma_F_contig104.579.1|Name=mRNA_S-firma_F_contig104.579.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=3738bp|location=Sequence derived from alignment at S-firma_F_contig104:48532..50623+ (Sphaerotrichia firma ET2_F female)back to top |