mRNA_S-firma_F_contig104.574.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig104.574.1
Unique NamemRNA_S-firma_F_contig104.574.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig104.574.1 vs. uniprot
Match: A0A6H5JQJ6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQJ6_9PHAE)

HSP 1 Score: 492 bits (1266), Expect = 5.990e-168
Identity = 266/333 (79.88%), Postives = 283/333 (84.98%), Query Frame = 2 
Query:   86 ASVAYLLVGGASAFVIPS-QAARXXXXXXXXXXXXSTFHGRRGVACPT--KAVGGGVXXXXXXXXXXXXXXXRGLRMAESEKLEVTLKKPMGLVLEENVGGFGGLRVKEVAEGGSAQEDGTIRVGDQLVEVQGESVKGKDFDEGMKKLMDAPEDGVKLQLFRGLAADLYNPQVYFDIEIGGEPKGRILMQLRSDVVPKTAENFRQLCTGEAPDGKSYKGTIFHRVIPGFMLQGGDFENADGTGGSSIYGAKFEDENFTLKHTGAGILSMANAGPGTNGSQFFICVAKTPWLDDKHVVFGEVIDGARTVKDIELLGSNSGKTSKAIKIVDCGQL 1075
            A V+  LV  +SAFV+PS Q AR            S F GR      +  +A   GV  XXXXXX        GLRMAESE+LEV+LKKPMGLVLEENVGGFGGLRVKEVA+GGSAQEDGT+RVGDQL+EVQGE+VKG DFDEGMKKLMDAPEDGVKL+LFRGLA+DLYNP+VYFDIEI GE KGRILMQLRSDVVPKTAENFRQLCTGEAPDGKSYKGTIFHRVIPGFMLQGGDF+NADGTGGSSIYGAKFEDENF LKHTG G+LSMANAGPGTNGSQFFICVAKTPWLDDKHVVFGEVIDGARTVKDIELLGS+ GK SK IKIVDCGQL
Sbjct:   12 AGVSAWLVARSSAFVLPSLQTARTAAVPSAPSASTSVFCGRPAAVASSSHEATAAGVGRXXXXXX--------GLRMAESEELEVSLKKPMGLVLEENVGGFGGLRVKEVADGGSAQEDGTVRVGDQLLEVQGENVKGIDFDEGMKKLMDAPEDGVKLKLFRGLASDLYNPKVYFDIEINGEDKGRILMQLRSDVVPKTAENFRQLCTGEAPDGKSYKGTIFHRVIPGFMLQGGDFDNADGTGGSSIYGAKFEDENFNLKHTGPGVLSMANAGPGTNGSQFFICVAKTPWLDDKHVVFGEVIDGARTVKDIELLGSSGGKPSKQIKIVDCGQL 336
[Close]
BLAST of mRNA_S-firma_F_contig104.574.1 vs. uniprot
Match: W7TD66_9STRA (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TD66_9STRA)

HSP 1 Score: 306 bits (784), Expect = 4.500e-96
Identity = 153/253 (60.47%), Postives = 184/253 (72.73%), Query Frame = 2 
Query:  317 EKLEVTLKKPMGLVLEENVGGFGGLRVKEVAEGGSAQEDGTIRVGDQLVEVQGESVKGKDFDEGMKKLMDAPEDGVKLQLFRGLAADLYNPQVYFDIEIGGEPKGRILMQLRSDVVPKTAENFRQLCTGEAPDGKSYKGTIFHRVIPGFMLQGGDFENADGTGGSSIYGAKFEDENFTLKHTGAGILSMANAGPGTNGSQFFICVAKTPWLDDKHVVFGEVIDGARTVKDIELLGSNSGKTSKAIKIVDCGQL 1075
            E ++V L+KPMG+VLEEN     G+ VK +++GG+A   G I+ GD LV VQGE V GKD D  +  + +AP + V+++ +RG   DL NPQV+FDI+IGGE  GRI  +LR DVVPKTAENFR LCTGE   G  YK + FHRVIPGFM QGGDF + DG GG SIYGAKF+DENF L H G GILSMANAGP TNGSQFF+C  +TPWLD KHVVFG+V +G   +K IE +GS  GKTS  + I DCGQL
Sbjct:   44 EFVDVMLQKPMGIVLEENDPKLQGVYVKSLSQGGAAAASGKIQAGDHLVSVQGEMVTGKDLDAVLSTVGNAPSESVQMRFYRGALGDLINPQVWFDIDIGGERAGRITCRLRKDVVPKTAENFRALCTGEK--GFGYKNSAFHRVIPGFMCQGGDFTSGDGRGGKSIYGAKFDDENFELTHDGPGILSMANAGPNTNGSQFFLCTVETPWLDGKHVVFGQVTEGLDILKKIEAVGSQVGKTSVPVMIADCGQL 294
[Close]
BLAST of mRNA_S-firma_F_contig104.574.1 vs. uniprot
Match: A0A7S3Y628_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y628_HETAK)

HSP 1 Score: 306 bits (784), Expect = 2.110e-95
Identity = 151/253 (59.68%), Postives = 174/253 (68.77%), Query Frame = 2 
Query:  317 EKLEVTLKKPMGLVLEENVGGFGGLRVKEVAEGGSAQEDGTIRVGDQLVEVQGESVKGKDFDEGMKKLMDAPEDGVKLQLFRGLAADLYNPQVYFDIEIGGEPKGRILMQLRSDVVPKTAENFRQLCTGEAPDGKSYKGTIFHRVIPGFMLQGGDFENADGTGGSSIYGAKFEDENFTLKHTGAGILSMANAGPGTNGSQFFICVAKTPWLDDKHVVFGEVIDGARTVKDIELLGSNSGKTSKAIKIVDCGQL 1075
            E +E  L KPMG+V EEN   FGG+ +K +   GSA  DG +R GDQLV VQG SV GK FDE M  L+  P +G  L+ FRG AADLYNPQVYFD+ IGG P GR++M LR DV PKT ENFR LC G+      YKG+IFHR+IP FM QGGDFEN DGTGG SIYG +F+DENF L H    +LSMANAG  TNGSQFF+     PWLD KH VFGEV++G   VK IE  G NSG+    + I DCGQL
Sbjct:   84 EFVEAKLSKPMGIVFEENEPQFGGIYIKSINSDGSAAADGALRPGDQLVAVQGASVAGKTFDEAMDALVAGPSEGTALKAFRGSAADLYNPQVYFDVSIGGAPAGRVVMALRKDVAPKTVENFRSLCVGDNDQKAGYKGSIFHRIIPNFMCQGGDFENFDGTGGWSIYGPRFKDENFALAHDRPYLLSMANAGRNTNGSQFFLTTVPCPWLDGKHTVFGEVVEGQDVVKAIEAQGDNSGRPKAKVVIEDCGQL 336
[Close]
BLAST of mRNA_S-firma_F_contig104.574.1 vs. uniprot
Match: A0A7S2V295_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V295_9STRA)

HSP 1 Score: 302 bits (773), Expect = 2.550e-94
Identity = 154/261 (59.00%), Postives = 185/261 (70.88%), Query Frame = 2 
Query:  293 RGLRMAESEKLEVTLKKPMGLVLEENVGGFGGLRVKEVAEGGSAQEDGTIRVGDQLVEVQGESVKGKDFDEGMKKLMDAPEDGVKLQLFRGLAADLYNPQVYFDIEIGGEPKGRILMQLRSDVVPKTAENFRQLCTGEAPDGKSYKGTIFHRVIPGFMLQGGDFENADGTGGSSIYGAKFEDENFTLKHTGAGILSMANAGPGTNGSQFFICVAKTPWLDDKHVVFGEVIDGARTVKDIELLGSNSGKTSKAIKIVDCGQL 1075
            RG+ M   E L++T+ KPMG++ EEN   FGGL +  + E G+A +   ++ GDQLVEVQGE VKG  FD+ M  L+  P +G ++++FRG AA+LYNP+VYFDI IGGEP GRI M LR D+ PKT ENFR LCTG+      YKGTIFHRVIP FM QGGDF N DGTGG SIYG KF DENFTL+H    +LSMANAG  TNGSQFF+   + PWLD KHVVFGEV++G   VK IE  G+ +GK    I I DCGQL
Sbjct:   47 RGITM---EFLDITIPKPMGILFEENDSNFGGLYINSINEDGAAAKT-ELKAGDQLVEVQGEDVKGYTFDKAMDALVAGPAEGTQIKIFRGDAAELYNPKVYFDISIGGEPSGRIKMCLRKDIAPKTVENFRSLCTGDNNKNIGYKGTIFHRVIPQFMCQGGDFTNFDGTGGYSIYGNKFMDENFTLRHDKPYLLSMANAGRNTNGSQFFLTTVECPWLDGKHVVFGEVVEGQDVVKAIESQGTRAGKPVAKIVIEDCGQL 303
[Close]
BLAST of mRNA_S-firma_F_contig104.574.1 vs. uniprot
Match: A0A6U3Y7I0_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3Y7I0_9STRA)

HSP 1 Score: 285 bits (729), Expect = 3.100e-88
Identity = 146/257 (56.81%), Postives = 181/257 (70.43%), Query Frame = 2 
Query:  311 ESEKLEVTLKKPMGLVLEENVGGFGGLRVKEVAEGGSAQEDGTIRVGDQLVEVQGESVKGKDFDEGMKKLMDAPE-DGVKLQLFRGL-AADLYNPQVYFDIEIGGEPKGRILMQLRSDVVPKTAENFRQLCTGEAPDGKSYKGTIFHRVIPGFMLQGGDFENADGTGGSSIYGAKFEDENFTLKHTGAGILSMANAGPGTNGSQFFICVAKTPWLDDKHVVFGEVIDGARTVKDIELLGSNSGKTSKAIKIVDCGQL 1075
            ++E+LEVTL+KPMG++ EEN    GG+ +   +EGG+ +  G+++VGDQL+ + G    G  FD+ M  L+ A   DGVKL+L RG+  A L NP+ +FDIEI GEP GR+ + LR+DVVP TAENFR LCTGE   G  YKG+ FHR+IP FM QGGDF+  DGTGG+SIYG KF DENF L H G G LSMANAG  TNGSQFFIC +KT +LD KHVVFG+V+DG   +  +  LGS SG     I I DCGQL
Sbjct:   14 DAEELEVTLQKPMGIIFEENDPRMGGIYINGFSEGGAGESLGSLQVGDQLLAIDGADAIGLSFDDAMDLLVAANGVDGVKLRLARGVDPAVLVNPRTFFDIEIDGEPAGRLTLLLRADVVPDTAENFRMLCTGELGGGLGYKGSRFHRIIPDFMCQGGDFQRGDGTGGASIYGGKFRDENFELPHEGPGTLSMANAGRNTNGSQFFICTSKTDFLDGKHVVFGKVLDGMEVLAKMNSLGSPSGSPGAKIVIADCGQL 270
[Close]
BLAST of mRNA_S-firma_F_contig104.574.1 vs. uniprot
Match: A0A7S0VZV6_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VZV6_9CRYP)

HSP 1 Score: 281 bits (719), Expect = 8.890e-86
Identity = 145/255 (56.86%), Postives = 175/255 (68.63%), Query Frame = 2 
Query:  329 VTLKKPMGLVLEENVGGFGGLRVKEVAEGGSAQE------DGTIRVGDQLVEVQGESVKGKDFDEGMKKLMDAPEDGVKLQLFRGLAADLYNPQVYFDIEIGGEPKGRILMQLRSDVVPKTAENFRQLCTGEAPDGKSYKGTIFHRVIPGFMLQGGDFENADGTGGSSIYGAKFEDENFTLKHTGAGILSMANAGPGTNGSQFFICVAKTPWLDDKHVVFGEVIDGARTVKDIELLGSNSGKTSKAIKIVDCGQL 1075
            V LKKPMG+  EE  GG  G+ VK++++  SA E      +  I +GD L+EV+G+   G DFD     L + P   + L+   G    + NP+ YFDIEIGGE  GRI M+LR D+VPKTA NF +LCTGE     +++G+ FHRVIPGFM QGGDF N DGTGG SIYG  F+DENF LKHT AG+LSMANAGP TNGSQFF+C  KT WLD KHVVFG+V +G   VK +E +GS SGKTSK  KI DCGQL
Sbjct:   89 VRLKKPMGITFEEADGG--GIFVKKISKA-SADEANAFYLENKISLGDVLIEVEGQKCAGMDFDSAFALLAENPSQELTLKFTPGGVMAVVNPRAYFDIEIGGEKAGRITMELRKDIVPKTATNFAELCTGENDMEYTFEGSTFHRVIPGFMCQGGDFTNGDGTGGKSIYGNSFKDENFELKHTSAGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGQVTEGMEVVKALEAVGSQSGKTSKPAKITDCGQL 340
[Close]
BLAST of mRNA_S-firma_F_contig104.574.1 vs. uniprot
Match: A0A7S0XX03_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XX03_HEMAN)

HSP 1 Score: 280 bits (717), Expect = 2.650e-85
Identity = 144/259 (55.60%), Postives = 179/259 (69.11%), Query Frame = 2 
Query:  308 AESEKLEVTLKKPMGLVLEENVGGFGGLRVKEVAEGGSAQE-----DGTIRVGDQLVEVQGESVKGKDFDEGMKKLMDAPEDGVKLQLFRGLAADLYNPQVYFDIEIGGEPKGRILMQLRSDVVPKTAENFRQLCTGEAPDGKSYKGTIFHRVIPGFMLQGGDFENADGTGGSSIYGAKFEDENFTLKHTGAGILSMANAGPGTNGSQFFICVAKTPWLDDKHVVFGEVIDGARTVKDIELLGSNSGKTSKAIKIVDCG 1069
            A  E   V +KKPMG+  EE  GG  G+ VK++++  S +      +  I +GD L+EV+G+   G DFD     L D P + ++L+   G    + NP+ +FDIEIGGE  GRI M+LR D+VPKTA NF +LC+GE  +G S+KG+IFHRVIPGFM QGGDF NADGTGG SIYG  F+DENF LKHT AG+LSMANAGP TNGSQFFIC   TP+LD+KHVVFG+V  G   VK IE +GS SGKT+  + I DCG
Sbjct:   89 ASFEAYTVKMKKPMGITFEEAEGG--GIFVKKLSKANSDKANHFNIENKISLGDVLIEVEGKKCAGFDFDSAFALLADNPAEELELKFTPGGVMAVVNPRAFFDIEIGGEKAGRITMELRKDIVPKTASNFAELCSGENDNGYSFKGSIFHRVIPGFMCQGGDFTNADGTGGRSIYGKSFKDENFDLKHTSAGVLSMANAGPNTNGSQFFICTVPTPFLDNKHVVFGQVESGMDVVKKIEQVGSESGKTAAKVVIADCG 345
[Close]
BLAST of mRNA_S-firma_F_contig104.574.1 vs. uniprot
Match: L1K294_GUITC (PPIase cyclophilin-type domain-containing protein (Fragment) n=2 Tax=Guillardia theta TaxID=55529 RepID=L1K294_GUITC)

HSP 1 Score: 279 bits (713), Expect = 7.090e-85
Identity = 146/256 (57.03%), Postives = 172/256 (67.19%), Query Frame = 2 
Query:  317 EKLEVTLKKPMGLVLEENVGGFGGLRVKEVAEGGSAQE-----DGTIRVGDQLVEVQGESVKGKDFDEGMKKLMDAPEDGVKLQLFRGLAADLYNPQVYFDIEIGGEPKGRILMQLRSDVVPKTAENFRQLCTGEAPDGKSYKGTIFHRVIPGFMLQGGDFENADGTGGSSIYGAKFEDENFTLKHTGAGILSMANAGPGTNGSQFFICVAKTPWLDDKHVVFGEVIDGARTVKDIELLGSNSGKTSKAIKIVDCG 1069
            E   VT+KKPMGLV EEN     G+ VK++ +  + Q      +  I + D L+ V GES  GK FDE    + + P   ++L   RG    +YNP+V+FDIEIGGE  GRI ++LR D  PKT ENFR+LC+GE  +G  YKG  FHRVIPGFM QGGDF N DGTGG SIYG  F DENF LKH  AGILSMANAGP TNGSQFFIC   TP+LD KHVVFGEV DG   VK IE +GS+SGKT+  + I DCG
Sbjct:   80 EAYTVTMKKPMGLVFEENDSQAKGILVKKIDKASADQANLFNLENKISIRDYLLRVNGESCLGKSFDEAFAMIAENPAQELELTFARGGVEAVYNPRVWFDIEIGGEKAGRIKIELRKDAAPKTVENFRKLCSGE--EGYGYKGCTFHRVIPGFMCQGGDFTNGDGTGGRSIYGKTFADENFDLKHDKAGILSMANAGPNTNGSQFFICTVPTPFLDGKHVVFGEVEDGMEVVKAIEAVGSSSGKTAAKVVIADCG 333
[Close]
BLAST of mRNA_S-firma_F_contig104.574.1 vs. uniprot
Match: D3WFS1_CONAN (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Conus anemone novaehollandiae TaxID=718021 RepID=D3WFS1_CONAN)

HSP 1 Score: 254 bits (650), Expect = 4.400e-78
Identity = 123/164 (75.00%), Postives = 136/164 (82.93%), Query Frame = 2 
Query:  584 NPQVYFDIEIGGEPKGRILMQLRSDVVPKTAENFRQLCTGEAPDGKSYKGTIFHRVIPGFMLQGGDFENADGTGGSSIYGAKFEDENFTLKHTGAGILSMANAGPGTNGSQFFICVAKTPWLDDKHVVFGEVIDGARTVKDIELLGSNSGKTSKAIKIVDCGQL 1075
            NPQV+FDIEIGG+P GRI+M+LR+DVVPKTAENFR LCTGE   G  +KG+ FHRVIPGFM QGGDF   +GTGG SIYG KFEDENF LKHTGAGILSMANAGP TNGSQFF+C AKT WLD KHVVFG V+DG   VK IEL+GS+SG TSK + I DCGQL
Sbjct:    3 NPQVFFDIEIGGKPVGRIVMELRADVVPKTAENFRALCTGEK--GFGFKGSSFHRVIPGFMCQGGDFTRHNGTGGKSIYGNKFEDENFKLKHTGAGILSMANAGPNTNGSQFFLCTAKTQWLDGKHVVFGNVVDGMDVVKAIELVGSDSGTTSKKVVIADCGQL 164
[Close]
BLAST of mRNA_S-firma_F_contig104.574.1 vs. uniprot
Match: A0A2C9V0Y6_MANES (Peptidyl-prolyl cis-trans isomerase n=4 Tax=rosids TaxID=71275 RepID=A0A2C9V0Y6_MANES)

HSP 1 Score: 248 bits (632), Expect = 2.560e-75
Identity = 118/169 (69.82%), Postives = 136/169 (80.47%), Query Frame = 2 
Query:  584 NPQVYFDIEIGGEPKGRILMQLRSDVVPKTAENFRQLCTGEAPDGKS-----YKGTIFHRVIPGFMLQGGDFENADGTGGSSIYGAKFEDENFTLKHTGAGILSMANAGPGTNGSQFFICVAKTPWLDDKHVVFGEVIDGARTVKDIELLGSNSGKTSKAIKIVDCGQL 1075
            NP+V+FD+ IGG+P GRI+M+L +DVVP+TAENFR LCTGE   GKS     YKG+ FHRVIPGFM QGGDF   +GTGG SIYG+KF DENF  KHTG GILSMANAGPGTNGSQFFIC AKT WLD KHVVFG+V++G   VK +E +GS+SGKTSK + I DCGQL
Sbjct:    3 NPKVFFDMAIGGQPAGRIVMELYADVVPRTAENFRALCTGEKGAGKSGKPLHYKGSTFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFICTAKTEWLDGKHVVFGQVVEGLDVVKAVEKVGSSSGKTSKPVMIADCGQL 171
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig104.574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQJ6_9PHAE5.990e-16879.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TD66_9STRA4.500e-9660.47Peptidyl-prolyl cis-trans isomerase n=2 Tax=Monodo... [more]
A0A7S3Y628_HETAK2.110e-9559.68Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V295_9STRA2.550e-9459.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6U3Y7I0_9STRA3.100e-8856.81Peptidyl-prolyl cis-trans isomerase n=1 Tax=Dictyo... [more]
A0A7S0VZV6_9CRYP8.890e-8656.86Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A7S0XX03_HEMAN2.650e-8555.60Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
L1K294_GUITC7.090e-8557.03PPIase cyclophilin-type domain-containing protein ... [more]
D3WFS1_CONAN4.400e-7875.00Peptidyl-prolyl cis-trans isomerase n=1 Tax=Conus ... [more]
A0A2C9V0Y6_MANES2.560e-7569.82Peptidyl-prolyl cis-trans isomerase n=4 Tax=rosids... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig104contigS-firma_F_contig104:26526..33203 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LHP1
Preferred namePPIE
PFAMsPro_isomerase,RRM_1
Max annot lvl2759|Eukaryota
KEGG koko:K01802,ko:K09564
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000413,GO:0000737,GO:0000974,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0003755,GO:0003824,GO:0004518,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006308,GO:0006309,GO:0006355,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0006810,GO:0006887,GO:0006915,GO:0006921,GO:0006950,GO:0006955,GO:0006974,GO:0008143,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008380,GO:0009056,GO:0009057,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0012501,GO:0012505,GO:0016018,GO:0016043,GO:0016070,GO:0016071,GO:0016192,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0022411,GO:0030141,GO:0030262,GO:0031323,GO:0031326,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032940,GO:0032991,GO:0033218,GO:0033554,GO:0034641,GO:0034655,GO:0034774,GO:0036211,GO:0036230,GO:0042119,GO:0042277,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043900,GO:0043902,GO:0043903,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045055,GO:0045069,GO:0045070,GO:0045321,GO:0046483,GO:0046700,GO:0046903,GO:0048518,GO:0048524,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051171,GO:0051179,GO:0051234,GO:0051252,GO:0051716,GO:0060205,GO:0060255,GO:0065007,GO:0070013,GO:0070717,GO:0071007,GO:0071013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0097159,GO:0097194,GO:0097708,GO:0099503,GO:0101002,GO:0140096,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901575,GO:1902494,GO:1903506,GO:1903900,GO:1903902,GO:1904813,GO:1990904,GO:2000112,GO:2001141
Evalue1.63e-175
EggNOG OGsCOG0652@1|root,KOG0111@2759|Eukaryota
EC5.2.1.8
Descriptionpeptidyl-prolyl cis-trans isomerase activity
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03110
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionPDZ domain
Ec32 orthologEc-26_003850.1
Exons9
Model size1951
Cds size1029
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815572.924974-UTR-S-firma_F_contig104:26525..273981622815572.924974-UTR-S-firma_F_contig104:26525..27398Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig104 26526..27398 -
1696949425.9646935-UTR-S-firma_F_contig104:26525..273981696949425.9646935-UTR-S-firma_F_contig104:26525..27398Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig104 26526..27398 -
1622815573.0595949-UTR-S-firma_F_contig104:33154..332031622815573.0595949-UTR-S-firma_F_contig104:33154..33203Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig104 33155..33203 -
1696949426.226492-UTR-S-firma_F_contig104:33154..332031696949426.226492-UTR-S-firma_F_contig104:33154..33203Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig104 33155..33203 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815572.9367836-CDS-S-firma_F_contig104:27398..274281622815572.9367836-CDS-S-firma_F_contig104:27398..27428Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig104 27399..27428 -
1696949425.9778247-CDS-S-firma_F_contig104:27398..274281696949425.9778247-CDS-S-firma_F_contig104:27398..27428Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig104 27399..27428 -
1622815572.9469533-CDS-S-firma_F_contig104:28129..282401622815572.9469533-CDS-S-firma_F_contig104:28129..28240Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig104 28130..28240 -
1696949425.9889781-CDS-S-firma_F_contig104:28129..282401696949425.9889781-CDS-S-firma_F_contig104:28129..28240Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig104 28130..28240 -
1622815572.9609432-CDS-S-firma_F_contig104:28687..288521622815572.9609432-CDS-S-firma_F_contig104:28687..28852Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig104 28688..28852 -
1696949426.0000038-CDS-S-firma_F_contig104:28687..288521696949426.0000038-CDS-S-firma_F_contig104:28687..28852Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig104 28688..28852 -
1622815572.970639-CDS-S-firma_F_contig104:29248..293291622815572.970639-CDS-S-firma_F_contig104:29248..29329Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig104 29249..29329 -
1696949426.035385-CDS-S-firma_F_contig104:29248..293291696949426.035385-CDS-S-firma_F_contig104:29248..29329Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig104 29249..29329 -
1622815572.9887743-CDS-S-firma_F_contig104:30005..301041622815572.9887743-CDS-S-firma_F_contig104:30005..30104Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig104 30006..30104 -
1696949426.05139-CDS-S-firma_F_contig104:30005..301041696949426.05139-CDS-S-firma_F_contig104:30005..30104Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig104 30006..30104 -
1622815573.003668-CDS-S-firma_F_contig104:30594..306811622815573.003668-CDS-S-firma_F_contig104:30594..30681Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig104 30595..30681 -
1696949426.0997934-CDS-S-firma_F_contig104:30594..306811696949426.0997934-CDS-S-firma_F_contig104:30594..30681Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig104 30595..30681 -
1622815573.0135674-CDS-S-firma_F_contig104:31406..314841622815573.0135674-CDS-S-firma_F_contig104:31406..31484Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig104 31407..31484 -
1696949426.1446369-CDS-S-firma_F_contig104:31406..314841696949426.1446369-CDS-S-firma_F_contig104:31406..31484Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig104 31407..31484 -
1622815573.0270617-CDS-S-firma_F_contig104:31706..319911622815573.0270617-CDS-S-firma_F_contig104:31706..31991Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig104 31707..31991 -
1696949426.1687436-CDS-S-firma_F_contig104:31706..319911696949426.1687436-CDS-S-firma_F_contig104:31706..31991Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig104 31707..31991 -
1622815573.0447235-CDS-S-firma_F_contig104:33061..331541622815573.0447235-CDS-S-firma_F_contig104:33061..33154Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig104 33062..33154 -
1696949426.1844714-CDS-S-firma_F_contig104:33061..331541696949426.1844714-CDS-S-firma_F_contig104:33061..33154Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig104 33062..33154 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig104.574.1prot_S-firma_F_contig104.574.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig104 27399..33154 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig104.574.1

>prot_S-firma_F_contig104.574.1 ID=prot_S-firma_F_contig104.574.1|Name=mRNA_S-firma_F_contig104.574.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=343bp
MAETKMSFIAAAASVAYLLVGGASAFVIPSQAARPAAAASPAAASSSTFH
GRRGVACPTKAVGGGVGAAAAWRGSGGGGGGRGLRMAESEKLEVTLKKPM
GLVLEENVGGFGGLRVKEVAEGGSAQEDGTIRVGDQLVEVQGESVKGKDF
DEGMKKLMDAPEDGVKLQLFRGLAADLYNPQVYFDIEIGGEPKGRILMQL
RSDVVPKTAENFRQLCTGEAPDGKSYKGTIFHRVIPGFMLQGGDFENADG
TGGSSIYGAKFEDENFTLKHTGAGILSMANAGPGTNGSQFFICVAKTPWL
DDKHVVFGEVIDGARTVKDIELLGSNSGKTSKAIKIVDCGQL*
back to top

mRNA from alignment at S-firma_F_contig104:26526..33203-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig104.574.1 ID=mRNA_S-firma_F_contig104.574.1|Name=mRNA_S-firma_F_contig104.574.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=6678bp|location=Sequence derived from alignment at S-firma_F_contig104:26526..33203- (Sphaerotrichia firma ET2_F female)
GACACGGAGAGCGACACGCAGGCACGCTGCCGATCACACACAACGAAAAA
TGGCGGAGACTAAGATGTCGTTCATCGCCGCTGCCGCGAGCGTTGCTTAT
TTGCTGGTTGGAGGAGCTTCAGCCTTCGTCATCCCATCGCAGGTAGGAGG
GCGCGCACATGTGTTTTGTCTCACATACCACGTACATGAAGCACAGCAGT
CATAGCATCCAAGCACAGGGATGGCTTGGGACTAATTTTCGAACGTCGGG
CGTATCGAATCCAGCTCCTTTATTCACTGCATGCTCTGAAAGGATGGCCG
TCTGGCTAACAATCCTGCCTGATCGAAGCGAAGCGTAAACATGCTCACCA
ACAAGCAGCGACCATGCATGATCGTATGTAGGAGCTCCGCTACTGTTGTC
TGCACACGGCGGTAGCAGTCTAGATAATTGGCCGTTGACTCGTGTCGTGA
GCTGTCGATCGATATTGATGGTCATAAAACAAGGAGAGAGTTGTCAAAGG
CGATTGAGGCCGTGATCAACGTCTCAATAGTCGCGAACCAAGTTTTCCGT
CGGACGCAGCAGCGCGAGATGGATGGTTCTAGAAACTGGATCTTGTGTTA
TACCTTCTTTCCACCGCATCCGCCCCTGTTCCGTCCTGCGTGTACTTGCT
CTCGAGTTGGAGAGTCGTTGGGTCACCCATACTATATGTTCTGCATCAAT
ACGCATGTCTGTAGGGCGTGCTGGTGCCGAGGCACCGGCTGCTGCTCGGG
GAACGACGGCGCCGGGTTTTTGCCATCCGTAACCAATGTTGCGAGTTGGG
CTTTGAAATTCGTTATGGTGTGCCGTGCTGTTTGGTGCTTTCCCTATGCG
CACTGCTGTGGTGGAGTTCACCGCTGAGACATGCATGCGCGTCGGGGCAA
ACCAATCCTGTGCAGAGACCGCTTGTTGATTGTCCATCAAACAGGCCGAA
CTCGGTGCGGGTCCGTACTTCGCTTGAGCTTTGCCCTCCCCCAACGCCCC
AAAGCCCACTCTCTCCCCTCCTGTTGGATGTCCCTCGCCTGGGCTAAGAC
GGGCCAAAACAACGGTGGCGCCCCCATCACGGTGTCGAAAAATGTCAGCG
CGGTGAAATTTGCAGCGGGTCTGCACCAGCACAGTGGTACTACTGTTCTT
TCACCCCGAACCCGCCCCGCCCCGCACCGCGCCCTAAAACTCCCGTCTCG
TCCTCGCGAAAGGCGGCACGACCAGCCGCAGCGGCGTCACCAGCAGCAGC
CTCCTCCTCCACTTTCCACGGCCGACGAGGGGTGGCATGCCCCACAAAGG
CAGTTGGCGGCGGGGTGGGTGCTGCTGCAGCGTGGCGGGGCAGCGGCGGT
GGCGGTGGCGGGCGGGGGCTGAGGATGGCCGAGTCCGAGAAGCTGGAGGT
TACGCTCAAGAAGCCGATGGGGTTGGTGCTGGAGGAGAACGTCGGGGGCT
TCGGCGGGCTGAGGGTGAAGGAGGTGGCCGAAGGTGGCTCGGCGCAGGTA
TGCTGCTGCTGCTGTTGCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTATTGTTGTTGTTGTTGACCTGTGCAACGCGAGAGGGTTTTCGGCG
ATGCTGTCGTTCCTTCCTCTAGCGACCTGCTGTTTCTCTCGTGCGACATG
ATGCGCTTGCTCTCTTGGTACTGATTGCGGAATGTGTGGTATCATTTGAT
GTGCTGTGTTGGTGCGCAGGAGGACGGGACCATCCGCGTGGGCGACCAGC
TGGTGGAGGTGCAAGGGGAGAGCGTCAAGGGCAAGGACTTCGACGAGGTA
AATCGACCCGTTGAAGCTCTACTTCGTATCCCGTGTTCGGTGTATTGATT
TATCGGATTTGCTGTTTGGATCGTATCATGGTGGGTCGAGCTGCTCGCCA
CGTGCAAGGCGGCTTGCTGTAGGGACTCTCGTCCCCCAACTCAAGAAGCA
AATCGACCGTGGAAGAAACAGAATTGACGCGAAAGTCGGCAGGCCCTTCT
TGTGGGCTTGGACAGACGGTGGTGTATATTCGGCATCATCGGGATCTGTG
GTTCGCGGAAAGGAACTATAGGGTGCTTGGAAATGTGGCGTTTTCTCGAG
GACCCGTGGCTGCTCTTTAGGTTGGCGGTGTGCCGTGGGATAAAAGAGTG
GCGGACACGAGCGTTTGTGTGATTTTTGAACGTTGACGGGGGGTAATTTT
GATTGGACCTGCTCGAGGGAGAGCATTTGTTATCGTTTTCTTGTCTGATG
AAGTACATACGCGGACTTGCTTGGGGCCCCCGCTCGACTCCGTTTGTGTG
TGTTGTCCAGGTTTCGATGGCAAGTGCTCGCCGCGGCGCCGCCACCAAAC
TTGTTCTTGAAATTTGCAACCCAGTGATGCGCTCAACAACAGCAGTTTTT
TATCGCCTCTCTACTCGTTGTTGATTGTAGCGACGCCGTTGCCGTCAGTT
TTCGCACACCTACTGCTGCGGCGTCCCAATGAAACCACCTCTTCTTTTCT
GTCTTCTCATGCGTTTGTCCAGGGTATGAAGAAGCTCATGGATGCCCCAG
AGGACGGGGTGAAGCTGCAGCTGTTCCGGGGGCTTGCCGCTGACCTCTAC
AACCCCCAGGTACGGACGCTCTACATGCGGGGCACAGACCGCGCGATTTG
TTTTTTCTCAATGTAGAGTATCGACTTTGTTCTTGTTCCGAGGCGTGGAC
CGGCGGTTGGGAAGTGGGCGGCGGTGAGGACGTGTTTCTTTTGATCGGTG
TCATAATCGCCAGCCGTGTGGGGCTGCTGCCTGCTTGTGTAGCAGTGGTT
GCGCGAGCGGCCCCGTGTGAGACATACATTCTGCAAGCGCGATTCTCAGT
TTCGCAAAACAAAAAAAAAACTCCTCGGCTTGCAACTGATGTCTCTCTCG
TGTAAGATCGAGCCCTTAGTCTTTGAGCGAACGAGGAAAGGAGAACTAAG
CCACATTGGTCTATTCGTTCGTTCTCTCCTCTGGCGGATGTTTCCTCTGT
CCCACCCAACACAACGCTGCTTTTGTGGAAACATGCGCTTGCTTGTTTTG
CTCGTGCGTGCCTTCTGTGCAATGCTTGCCGGCCGGGGGGGATCAAAAGG
TGTACTTTGATATCGAGATTGGTGGCGAGCCGAAGGGGCGTATCTTGATG
CAGCTGCGGTCAGACGTGGTACCGAAGACCGCTGAAAACTTCCGCCAGGT
ACGTCCATACGTGATTCGCCATGCCCTCTGGTAGAGCCACCTACCGGGGG
CATGGAGGTCGTGGAGGCCGGGGGAGAGAGGAGGAAGGGTGGCGGGAAAG
GAGGCGGAAGGGGAGAGAGAGAGAGAGAGGAAGCTGCCGCTCTCATGTTT
TCTCTTGCCGGGGCGTGATGCAGCGCATGCCGTGTCGCGGGGCACGGCGG
ATGGCGTAGTGCGGGATGAGCGAGTACATTTCATGACGATTTGACCACAG
TTTTGCAACTGGGGCAACCTTAACCTCTATACCCGTAGCTTCGAGCGCTT
AAACTTCTGAGGGTTCTTCATGTTAGGTTTGTCTCTTTGGCCGCTGCTCT
GTGACACTCGCGACGCGGCATGGGCTTGTTAGCCTTCTCTACTGCGGTCT
TGATTTTTTTTCAGCCGGCGTGTCCGGCGGGAACAAACACGTCGATGCTC
GATACTCAGCTTCTACGCCAAGACCAGCCCCCCACGGAATGTTGATGGCT
TCTATCTTTTGCGGGAAAAAGCGGAATTTCTGCGGGCGAGACAGAGGTCC
CCGGTTGATTGTCGATTCTAAACCACTGTATCTTCTAGCGCACGGCTCAT
CCTCCCTCCTATCAGCGCCGCGGCGTCGTTCCCGCATCATCACCATAGTC
TCCTTTCTCTTTCTCTCTGCTCAGCTATGCACCGGCGAGGCACCCGACGG
GAAGTCGTACAAGGGCACCATCTTCCACAGGGTCATCCCAGGATTCATGC
TCCAGGTGCGTCCAAGTACACGTGGTGTGTATTCGGTGTAGTGCAAATAA
AGCCGCGGGGTTGTCTTTTTTTTTGTTCTTGGGATTTCCTCTATTTTGGC
GGCATTTTTGCGGCCTGTGACCTGATGCCACTTATACCAGCTGGTTTTCC
GTGCACGCCTGTCGACCTGAGTGCCTTGCTGCTGGGCATCATTGCTTGTG
CATGTTTTCGATGCGTTGGTCTACTTGGCGGGCCTGGTCTGCAAGTTGCG
TCGAGGCATAGAATACAAAACACTCCCGCCGGGCGTAGTAAGTAAGGACT
TGGCACAATTTTCACAGAATCAAAAACGGTTCCAGCTGCCAAGGCCTCGG
TGTCACCCGCTGTCCTCCCCCAAATACCCCCCTCACGCTTCGTGTTGCCA
GGGCGGGGACTTCGAGAACGCGGACGGCACGGGAGGGTCTTCGATCTACG
GAGCCAAGTTCGAGGACGAGAACTTCACGCTCAAGCACACCGGCGCCGGG
ATCCTGAGCATGGCCAACGCGGGCCCCGGGACCAACGGGAGCCAGTTCTT
CATCTGCGTCGCCAAGGTAAGGCGGTGGCGCTCAAGCTGCACGTGTGCAA
TATTGTTTGTTGGTGATGGTATTCCGAAGTGCTAGGGTGCGTCCGCACTT
GTTTCTCTTGGCGTTGTCACGGTAGTACAATATTCAGTTGCCTTGGAAGA
CCGAAGAGAACGCAGCTGTGCCGTCCGTGTATTGCAGGGATTGTTTTTAT
GGTTTTGTCCAAGCGTTCGCGCTCAACCCGCATTTTATCTCTCGCGTGCA
AGATCGGGCCTCAGAAAATTTCGCAGGGAGAGCAGTAAAGTGTTGGATCG
CGAACGATAAAGAGCCCCGATCTTTTTTGGGGGGACGACGCTTGCTTTAT
CTCGATTGCTGTTTTACGGGCACCAACGCTATCAGCAACCAAACTCCCGC
CGCTTGGCGCCATTCTTGTGCGCGGCGTCTTTTGCTTTTGTTGGTGTTGC
TGCCCGCGAGCAGACCCCGTGGCTAGACGACAAGCACGTCGTGTTCGGCG
AGGTGATCGACGGCGCCAGGACCGTGAAGGACATCGAGCTGCTCGGCAGC
AATAGCGGCAAGACCAGCAAGGCGGTAAGGGATTTAGCGTTTGTTGCTTG
CTAGCGGTGGCGATGGTGCACGGTAGTCGATGATGCAATGATCAGCTTTG
TTTGCTTGGGCGTTGGATCGGTGCGAAAGAGGCGGCCACTTGTATGACTT
TGTAAACGATGCGCTTTCGTTCAGCTTTGATGGAGCTACGTACGCACACA
CTTGCTGTGTTCAAAATGTGCCTCTTTTTGTTCGTAGCGAGGACGTTGGC
TTTCGGGAACCATGGGTCGGCCCGAACAACAATGTTCCAGAGTACATGCG
CACAGCACGGTTGTTTGCGAACAAATAAGGGGCAACCCCAGCGGTGCGAT
GATGTAGTCCCGTGCAGTGAGTGCTGTAGCTGGTCCGCCGTCCCCGCTCA
CTGTGCAGCGTGTGTCTGGTTTTCAGTACGGTGTGCCTTTCGAAATGCGT
CCCACCGCATAGCTGGCACGGCAAGACCTCAAGGATGGTGGTAGCCGTCA
TGGCTGCTGTGTTTTCAACATTCCCAACGCACAACAACCGAGGTAAAAGC
GAAGCTAAGGCCTGAGAGAAGTGAGATATTTAGGTCCAAACTCTGTCGTT
ACTGGCAGCCTGCCACTCTGCTCCGCCTGCCGAATGAGATTACTGAAATA
TCTTCTCTGCCTCTCACCCCCCACCGCCTCCACACCCCCCACCGCCTCCA
CCGTCGTGTTGCAACATCGTTGCAGATCAAGATCGTCGACTGCGGCCAGC
TCTAAGGCACCTTGGTGCCCGGAAACTCTTGCGCTTCCCCCTATCGACAG
CTAGCCCACCCCTTCTTGTCGAGAACTCCAGGCGGTTAGTTCTTCCGCAG
AGGTTTTAGAGTGCACACTTGATGACCAATCACGATCAGGGGTAGACGCA
GTTGAAGGGTACTCTGTCTACATACGCCGACTACCAAGAGGCATGCGCGT
GTGAGGTTGGCTGATGCGCGGAAGGGGGGCGCAGCGGGTGATGGAGCCTG
CCGAGGGCCGACTTGTCTCGACCAGCTTGAGGCTCATTGTAAAACTGCCG
TGTGTGCTCGCGCTCCTCCTGTGGTTGAACGGTGACACACAGATGTTTTT
TTGGACTTCGGGTGGGACTGTCGGGAAGTACGGGCTAGCTGGCTTTGGGT
ACGATTTCGGCGAGCGTCTCTCGGGAAACACGGCGTATTGTCGAGGGGTA
TATACTTGTTTTTTTCAGGGGCTTCGGTGCCTTTTGCCTTACGTCAGGAA
TGTTGCTGGGAGTGGGAGTATTTTCGGGGGTGGGCGGGGAGAGAGTTTTG
ATTCCTTTTCGGAGTGCGATAGACGTACGCGCTCGGCTCCCCTCGAGGAC
AGAGTAGTACAAAGTCGTCGCTGATGTTCGCTCGAGCGAGCTGGTGCCTT
GTTGAGCGTTGAACGATTGGAAAGCCTAGAACTAGTTTATCATCGCAATG
CTAGATGTGTGTGAAATAGTTATTAGGCATGTCGGTAGAGTATTTTAGAA
ATCCAACGGCAGTGAATGCTGCACCTTCAGCAGGTTCTCCTCTTGTTTTG
TTTCTTGTGTCGTGTGCGTTTGAATATTGAAGTTGCCCGTTTTCCCTTCG
TTCCAAGCAACTTGTCCGAACTTGCAGC
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig104:26526..33203-

>mRNA_S-firma_F_contig104.574.1 ID=mRNA_S-firma_F_contig104.574.1|Name=mRNA_S-firma_F_contig104.574.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2058bp|location=Sequence derived from alignment at S-firma_F_contig104:26526..33203- (Sphaerotrichia firma ET2_F female)
ATGGCGGAGACTAAGATGTCGTTCATCGCCGCTGCCGCGAGCGTTGCTTA
TTTGCTGGTTGGAGGAGCTTCAGCCTTCGTCATCCCATCGCAGATGGCGG
AGACTAAGATGTCGTTCATCGCCGCTGCCGCGAGCGTTGCTTATTTGCTG
GTTGGAGGAGCTTCAGCCTTCGTCATCCCATCGCAGGCGGCACGACCAGC
CGCAGCGGCGTCACCAGCAGCAGCCTCCTCCTCCACTTTCCACGGCCGAC
GAGGGGTGGCATGCCCCACAAAGGCAGTTGGCGGCGGGGTGGGTGCTGCT
GCAGCGTGGCGGGGCAGCGGCGGTGGCGGTGGCGGGCGGGGGCTGAGGAT
GGCCGAGTCCGAGAAGCTGGAGGTTACGCTCAAGAAGCCGATGGGGTTGG
TGCTGGAGGAGAACGTCGGGGGCTTCGGCGGGCTGAGGGTGAAGGAGGTG
GCCGAAGGTGGCTCGGCGCAGGCGGCACGACCAGCCGCAGCGGCGTCACC
AGCAGCAGCCTCCTCCTCCACTTTCCACGGCCGACGAGGGGTGGCATGCC
CCACAAAGGCAGTTGGCGGCGGGGTGGGTGCTGCTGCAGCGTGGCGGGGC
AGCGGCGGTGGCGGTGGCGGGCGGGGGCTGAGGATGGCCGAGTCCGAGAA
GCTGGAGGTTACGCTCAAGAAGCCGATGGGGTTGGTGCTGGAGGAGAACG
TCGGGGGCTTCGGCGGGCTGAGGGTGAAGGAGGTGGCCGAAGGTGGCTCG
GCGCAGGAGGACGGGACCATCCGCGTGGGCGACCAGCTGGTGGAGGTGCA
AGGGGAGAGCGTCAAGGGCAAGGACTTCGACGAGGAGGACGGGACCATCC
GCGTGGGCGACCAGCTGGTGGAGGTGCAAGGGGAGAGCGTCAAGGGCAAG
GACTTCGACGAGGGTATGAAGAAGCTCATGGATGCCCCAGAGGACGGGGT
GAAGCTGCAGCTGTTCCGGGGGCTTGCCGCTGACCTCTACAACCCCCAGG
GTATGAAGAAGCTCATGGATGCCCCAGAGGACGGGGTGAAGCTGCAGCTG
TTCCGGGGGCTTGCCGCTGACCTCTACAACCCCCAGGTGTACTTTGATAT
CGAGATTGGTGGCGAGCCGAAGGGGCGTATCTTGATGCAGCTGCGGTCAG
ACGTGGTACCGAAGACCGCTGAAAACTTCCGCCAGGTGTACTTTGATATC
GAGATTGGTGGCGAGCCGAAGGGGCGTATCTTGATGCAGCTGCGGTCAGA
CGTGGTACCGAAGACCGCTGAAAACTTCCGCCAGCTATGCACCGGCGAGG
CACCCGACGGGAAGTCGTACAAGGGCACCATCTTCCACAGGGTCATCCCA
GGATTCATGCTCCAGCTATGCACCGGCGAGGCACCCGACGGGAAGTCGTA
CAAGGGCACCATCTTCCACAGGGTCATCCCAGGATTCATGCTCCAGGGCG
GGGACTTCGAGAACGCGGACGGCACGGGAGGGTCTTCGATCTACGGAGCC
AAGTTCGAGGACGAGAACTTCACGCTCAAGCACACCGGCGCCGGGATCCT
GAGCATGGCCAACGCGGGCCCCGGGACCAACGGGAGCCAGTTCTTCATCT
GCGTCGCCAAGGGCGGGGACTTCGAGAACGCGGACGGCACGGGAGGGTCT
TCGATCTACGGAGCCAAGTTCGAGGACGAGAACTTCACGCTCAAGCACAC
CGGCGCCGGGATCCTGAGCATGGCCAACGCGGGCCCCGGGACCAACGGGA
GCCAGTTCTTCATCTGCGTCGCCAAGACCCCGTGGCTAGACGACAAGCAC
GTCGTGTTCGGCGAGGTGATCGACGGCGCCAGGACCGTGAAGGACATCGA
GCTGCTCGGCAGCAATAGCGGCAAGACCAGCAAGGCGACCCCGTGGCTAG
ACGACAAGCACGTCGTGTTCGGCGAGGTGATCGACGGCGCCAGGACCGTG
AAGGACATCGAGCTGCTCGGCAGCAATAGCGGCAAGACCAGCAAGGCGAT
CAAGATCGTCGACTGCGGCCAGCTCTAAATCAAGATCGTCGACTGCGGCC
AGCTCTAA
back to top