mRNA_S-firma_F_contig10389.553.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10389.553.1
Unique NamemRNA_S-firma_F_contig10389.553.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10389.553.1 vs. uniprot
Match: A0A1F8EBL1_9BACT (Uncharacterized protein n=1 Tax=Candidatus Yanofskybacteria bacterium RIFCSPHIGHO2_01_FULL_41_21 TaxID=1802660 RepID=A0A1F8EBL1_9BACT)

HSP 1 Score: 50.4 bits (119), Expect = 7.240e-5
Identity = 36/154 (23.38%), Postives = 71/154 (46.10%), Query Frame = 1 
Query:   19 VADVLGDR--PHHVTGGTAAVLLGVVRDIQDVDVDVDLGDVWPVVRGAAGGDVVSAPAPYTDDQWDIVSAEVRVRGVTIDFTDASTGGVRLRHDASKDFHTVGVDLEAFTVVTVAPPGEAPFDVR--VTPLAALTAYKALLRRVVDVFDVRQLA 468
            + +++G    P  +TGG AA + G  R + D+D+++     +  +       +   P  + DD WD+    +   G  ID  D+++   +++   ++ +    VD     +  +       F +R  V P+  L  YK +L+R VDV D++ L+
Sbjct:    1 MVEIIGKHKIPFQITGGLAARIYGSSRPLADIDIEIPKNK-FKYILEEVKDYIKFGPKIFKDDNWDLYLMTLDYAGQEIDICDSNS---KIKDYMTEKWIENRVDFSRVVIQDI-------FGLRTPVVPIEDLIRYKKILKREVDVEDIKNLS 143
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BLAST of mRNA_S-firma_F_contig10389.553.1 vs. uniprot
Match: A0A455SFC1_9CHLR (Uncharacterized protein n=2 Tax=Thermosporothrix TaxID=768650 RepID=A0A455SFC1_9CHLR)

HSP 1 Score: 50.4 bits (119), Expect = 9.130e-5
Identity = 46/155 (29.68%), Postives = 72/155 (46.45%), Query Frame = 1 
Query:   46 HHV----TGGTAAVLLGVVRDIQDVDVDVDLGDVWPVVRGAAGGDVVSAPAPYTDDQWDIVSAEVRVRGVTIDFTDASTGGVRLRHDASKDFHTVGVDLEAFTVVTVAPPGE----APFDVRVTPLAALTAYKALLRRVVDVFDVRQLAALGEGS 486
            HHV    TGG AA++ G  R + D+D+DV   D+ P+V       +V       D+ +DI+   + + GV+ID + A            +D + +  D + F + T          A  ++ V   A L AYK L+ R  D+FD+   AA+ E S
Sbjct:   20 HHVAFQITGGLAALIYGSSRPLYDIDIDVAQKDM-PLVCELFRNAIVMPLERLQDENFDILMLTIELDGVSIDISQA------------EDAYCITPDGKRFRMETNPATARRCSFAGLELPVQRKADLIAYKRLVARETDLFDI---AAITEVS 158
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10389.553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A1F8EBL1_9BACT7.240e-523.38Uncharacterized protein n=1 Tax=Candidatus Yanofsk... [more]
A0A455SFC1_9CHLR9.130e-529.68Uncharacterized protein n=2 Tax=Thermosporothrix T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10389contigS-firma_F_contig10389:3046..3531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog400668.Mmwyl1_3725
Max annot lvl135619|Oceanospirillales
Evalue3e-06
EggNOG OGs2EH3G@1|root,33AVG@2|Bacteria,1NQ4B@1224|Proteobacteria,1SHSX@1236|Gammaproteobacteria,1XQJ0@135619|Oceanospirillales
Hectar predicted targeting categoryother localisation
Exons1
Model size486
Cds size486
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815570.9313126-CDS-S-firma_F_contig10389:3045..35311622815570.9313126-CDS-S-firma_F_contig10389:3045..3531Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10389 3046..3531 +
1696949424.1588447-CDS-S-firma_F_contig10389:3045..35311696949424.1588447-CDS-S-firma_F_contig10389:3045..3531Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10389 3046..3531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10389.553.1prot_S-firma_F_contig10389.553.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10389 3046..3531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10389.553.1

>prot_S-firma_F_contig10389.553.1 ID=prot_S-firma_F_contig10389.553.1|Name=mRNA_S-firma_F_contig10389.553.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=162bp
VHALRWVADVLGDRPHHVTGGTAAVLLGVVRDIQDVDVDVDLGDVWPVVR
GAAGGDVVSAPAPYTDDQWDIVSAEVRVRGVTIDFTDASTGGVRLRHDAS
KDFHTVGVDLEAFTVVTVAPPGEAPFDVRVTPLAALTAYKALLRRVVDVF
DVRQLAALGEGS
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mRNA from alignment at S-firma_F_contig10389:3046..3531+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10389.553.1 ID=mRNA_S-firma_F_contig10389.553.1|Name=mRNA_S-firma_F_contig10389.553.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=486bp|location=Sequence derived from alignment at S-firma_F_contig10389:3046..3531+ (Sphaerotrichia firma ET2_F female)
GTGCACGCCTTGCGGTGGGTTGCCGACGTGCTGGGGGACCGCCCGCACCA
CGTCACAGGTGGCACCGCCGCCGTCCTCTTGGGCGTCGTGCGAGACATCC
AGGACGTAGATGTGGACGTGGACCTGGGAGACGTGTGGCCGGTTGTGAGG
GGCGCGGCTGGGGGGGACGTTGTGTCAGCGCCTGCGCCGTACACTGACGA
CCAGTGGGACATTGTGAGCGCGGAGGTGCGGGTGCGGGGCGTGACCATTG
ACTTTACGGACGCGTCCACGGGGGGCGTTCGACTGCGCCACGATGCCAGC
AAAGACTTTCACACTGTCGGCGTGGACCTTGAGGCGTTCACTGTTGTGAC
GGTGGCGCCGCCGGGGGAGGCGCCGTTTGACGTCCGGGTGACGCCGCTGG
CTGCCCTCACCGCGTACAAGGCCCTTCTCCGGCGGGTCGTGGACGTGTTC
GACGTCCGCCAGCTGGCGGCGTTGGGGGAGGGCTCC
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Coding sequence (CDS) from alignment at S-firma_F_contig10389:3046..3531+

>mRNA_S-firma_F_contig10389.553.1 ID=mRNA_S-firma_F_contig10389.553.1|Name=mRNA_S-firma_F_contig10389.553.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=972bp|location=Sequence derived from alignment at S-firma_F_contig10389:3046..3531+ (Sphaerotrichia firma ET2_F female)
GTGCACGCCTTGCGGTGGGTTGCCGACGTGCTGGGGGACCGCCCGCACCA
CGTCACAGGTGGCACCGCCGCCGTCCTCTTGGGCGTCGTGCGAGACATCC
AGGACGTAGATGTGGACGTGGACCTGGGAGACGTGTGGCCGGTTGTGAGG
GGCGCGGCTGGGGGGGACGTTGTGTCAGCGCCTGCGCCGTACACTGACGA
CCAGTGGGACATTGTGAGCGCGGAGGTGCGGGTGCGGGGCGTGACCATTG
ACTTTACGGACGCGTCCACGGGGGGCGTTCGACTGCGCCACGATGCCAGC
AAAGACTTTCACACTGTCGGCGTGGACCTTGAGGCGTTCACTGTTGTGAC
GGTGGCGCCGCCGGGGGAGGCGCCGTTTGACGTCCGGGTGACGCCGCTGG
CTGCCCTCACCGCGTACAAGGCCCTTCTCCGGCGGGTCGTGGACGTGTTC
GACGTCCGCCAGCTGGCGGCGTTGGGGGAGGGCTCCGTGCACGCCTTGCG
GTGGGTTGCCGACGTGCTGGGGGACCGCCCGCACCACGTCACAGGTGGCA
CCGCCGCCGTCCTCTTGGGCGTCGTGCGAGACATCCAGGACGTAGATGTG
GACGTGGACCTGGGAGACGTGTGGCCGGTTGTGAGGGGCGCGGCTGGGGG
GGACGTTGTGTCAGCGCCTGCGCCGTACACTGACGACCAGTGGGACATTG
TGAGCGCGGAGGTGCGGGTGCGGGGCGTGACCATTGACTTTACGGACGCG
TCCACGGGGGGCGTTCGACTGCGCCACGATGCCAGCAAAGACTTTCACAC
TGTCGGCGTGGACCTTGAGGCGTTCACTGTTGTGACGGTGGCGCCGCCGG
GGGAGGCGCCGTTTGACGTCCGGGTGACGCCGCTGGCTGCCCTCACCGCG
TACAAGGCCCTTCTCCGGCGGGTCGTGGACGTGTTCGACGTCCGCCAGCT
GGCGGCGTTGGGGGAGGGCTCC
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