mRNA_S-firma_F_contig10383.549.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10383.549.1
Unique NamemRNA_S-firma_F_contig10383.549.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10383.549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10383contigS-firma_F_contig10383:86..2251 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size555
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10383.549.1prot_S-firma_F_contig10383.549.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10383 1155..2246 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815570.5575058-UTR-S-firma_F_contig10383:85..2271622815570.5575058-UTR-S-firma_F_contig10383:85..227Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10383 86..227 -
1696949423.759662-UTR-S-firma_F_contig10383:85..2271696949423.759662-UTR-S-firma_F_contig10383:85..227Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10383 86..227 -
1622815570.5732923-UTR-S-firma_F_contig10383:1070..11541622815570.5732923-UTR-S-firma_F_contig10383:1070..1154Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10383 1071..1154 -
1696949423.7748277-UTR-S-firma_F_contig10383:1070..11541696949423.7748277-UTR-S-firma_F_contig10383:1070..1154Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10383 1071..1154 -
1622815570.611461-UTR-S-firma_F_contig10383:2246..22511622815570.611461-UTR-S-firma_F_contig10383:2246..2251Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10383 2247..2251 -
1696949423.8048775-UTR-S-firma_F_contig10383:2246..22511696949423.8048775-UTR-S-firma_F_contig10383:2246..2251Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10383 2247..2251 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815570.583287-CDS-S-firma_F_contig10383:1154..11591622815570.583287-CDS-S-firma_F_contig10383:1154..1159Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10383 1155..1159 -
1696949423.7855625-CDS-S-firma_F_contig10383:1154..11591696949423.7855625-CDS-S-firma_F_contig10383:1154..1159Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10383 1155..1159 -
1622815570.595471-CDS-S-firma_F_contig10383:1927..22461622815570.595471-CDS-S-firma_F_contig10383:1927..2246Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10383 1928..2246 -
1696949423.7954013-CDS-S-firma_F_contig10383:1927..22461696949423.7954013-CDS-S-firma_F_contig10383:1927..2246Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10383 1928..2246 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10383.549.1

>prot_S-firma_F_contig10383.549.1 ID=prot_S-firma_F_contig10383.549.1|Name=mRNA_S-firma_F_contig10383.549.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=108bp
MRVLRVTFETCVLWGAQLPSSRYTGYGDLVCIPTTQRGACTRASKCTHLD
KTIAVPVYPHHLGCCMKGIKGVRCGGNFGGLSRSQLQQSSDAEEREGEAS
CVRTTSG*
back to top

mRNA from alignment at S-firma_F_contig10383:86..2251-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10383.549.1 ID=mRNA_S-firma_F_contig10383.549.1|Name=mRNA_S-firma_F_contig10383.549.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2166bp|location=Sequence derived from alignment at S-firma_F_contig10383:86..2251- (Sphaerotrichia firma ET2_F female)
GCAAGATGCGTGTCCTCCGGGTGACATTCGAAACATGCGTGTTGTGGGGG
GCACAACTTCCGTCGTCAAGATACACCGGGTATGGAGATCTCGTGTGTAT
CCCAACGACACAGAGAGGTGCATGCACGCGCGCATCGAAATGCACCCACC
TCGACAAGACGATCGCTGTCCCGGTCTACCCCCATCATCTCGGCTGCTGC
ATGAAGGGAATAAAAGGCGTCCGTTGCGGTGGTAACTTTGGCGGATTGAG
TCGATCACAGCTGCAGCAATCGTCCGATGCGGAGGAGAGGGAAGGAGAGG
CATCATGCGTGCGGACAACAAGCGGTGAGCCTAGAAGGGACTCTGGCACT
ACGGCTGTAGATTCGAGAGAAACACGCTCTGGCTAGAAAGTAGTAACATT
GTGCGGCCAGGATCAACAATGACCTTACCACCGCCGGGGCGGTTTCAACT
CTGATGCTGATGCTTGTGGGTCTCTCTCTCACACACGCCCCACCACTCCC
TCTCCATGTGTCTGGTGATGATGACTTGCGTTGTCCTCGTTTGGTTTGAG
ACTTCGCACGGTAATTTAGTTATGTCTCTACCGTGGACCTCACAGAGCTA
CCATTGCCACCCTGCGCCTCGTGAAAGTCTGGGCAATGCCTATGCAGCTC
GTGCTTGTAGCTCTTTTTGCAAGGCATAGACTATGGAGGTCGATAAAGAT
CATGTCGCGTGGGGAGGGGGATCTCAACTCCACCGCACAAACAAGAGGGC
GATGATCGTGCACCACGCAGTGTTGAAATGGCGAGCCTCCCAGGGGGCAG
TGTGACCCATATGACTGCCCCCCTGGAAATGGTGACAACCAAACAACTTT
TTGTTCGAAGGTGTCACATTCATCCATCCGCCAAAACACTTGATCCACAC
GAACTTCAGTGTGATGGATACAGCTGTCACTGCGTTCGACTCGCCGAACA
CCCCACAGCGCTTCGCGCTTGGAGTTCCACGAGCCTGGCCCTGCTGGTAG
AAACCGCTTCGGATATGCCCCGGACCGACTAAGGCGTGCAAGACCAAAGA
GCAAAGAGCTCGTTCCCAACCCCCTTTTGCGGAACACTGCAGGTTGAAGA
GGCAGGGACCGGAACTTGCCAAGAGAACGAGAGCAGCTCGTGTGGTGCTT
GTCGGACGGAGGGGCAAGACACCTCAGACAGGTGAGGCCTTTGTGGCAGA
TATGTAGGATGGCAGGACTGGCACACCGAGAGGGTTGCAGCTACACAACG
AAGGGAGTACGTATGTATGTCGTCGTGAGCGAGCGAGACCCTACAAAAAA
AAACAGAGAAATAAATGCTGTCTGTATGTACCACCCAGCCAGGCGGTGAT
GGATGACGTGTATTTAGATGGTTGGTGACCGAATACGGCCAACAGGAAGC
AGTAGACAAGGCATGGGAGGCAGCTTTAGGAAACATGGTGCGTATCGTCA
ACCTTCCTTCTGAACGAGCGCCCCGTCAATACTGATTGGTTGGTGGTATA
TATTGCTGTAGTACATACCTCGAGTGGCGGCGGCTCCCCGCTTCGAAGTG
ACGAAGGCAAGCAAGCGAGCAGCCAAACGCTATGATCAACACCTGTAGGG
TGCACCACCCCCGCCCCCCGACGCCCCCATGCACGTGCAACCTGTTACTG
GTCCGGAGGCTCGTGCCGTGATATTTCCAATGCAAACATCCACGCGGCAT
GAGTGATGTGGTTCTTGTGTTGTGCCAAAACTGCAGTCCATCTACAGAGA
GTAGCAGAAGTGTGGTAGTCTCGACCAAGTCTCGACGAGTTTTTTTCAAG
GCTTCGTCTACTTTCCCTGCTGGTGCGAGTTGTTGGCACCCTCGTCGTTG
TGGAGCATGCCCAATGGAGCGATGTAAGCTTCGGTTTCCTTGGGGCAGAT
ACCTAGAGAAAAGTGTGGCGTATTTCGCTCTCCCTTTTTCTTTACCTTAA
TGTATACGCGCTCTACAGGGTGCTTGCTCTGAAAACATGTCCTCCTCTGG
TCTATTGTGCCATTTTGTCTCCAGCAACGCGATCAAAAAGGCGTCCAACG
AACCGCGGAGCTGAAGAGGGACTGATGACGCGGTGTAGGCAGCGAGAGGA
TATGGAGGGTCAGAGAGGGGAAGGAGAACAAGAGGGCGATGAATGTACCG
CCTCAATCAACCTCCG
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10383:86..2251-

>mRNA_S-firma_F_contig10383.549.1 ID=mRNA_S-firma_F_contig10383.549.1|Name=mRNA_S-firma_F_contig10383.549.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=648bp|location=Sequence derived from alignment at S-firma_F_contig10383:86..2251- (Sphaerotrichia firma ET2_F female)
ATGCGTGTCCTCCGGGTGACATTCGAAACATGCGTGTTGTGGGGGGCACA
ACTTCCGTCGTCAAGATACACCGGGTATGGAGATCTCGTGTGTATCCCAA
CGACACAGAGAGGTGCATGCACGCGCGCATCGAAATGCACCCACCTCGAC
AAGACGATCGCTGTCCCGGTCTACCCCCATCATCTCGGCTGCTGCATGAA
GGGAATAAAAGGCGTCCGTTGCGGTGGTAACTTTGGCGGATTGAGTCGAT
CACAGCTGCAGCAATCGTCCGATGCGGAGGAGAGGGAAGGAGAGGCATCA
TGCGTGCGGACAACAAGCGATGCGTGTCCTCCGGGTGACATTCGAAACAT
GCGTGTTGTGGGGGGCACAACTTCCGTCGTCAAGATACACCGGGTATGGA
GATCTCGTGTGTATCCCAACGACACAGAGAGGTGCATGCACGCGCGCATC
GAAATGCACCCACCTCGACAAGACGATCGCTGTCCCGGTCTACCCCCATC
ATCTCGGCTGCTGCATGAAGGGAATAAAAGGCGTCCGTTGCGGTGGTAAC
TTTGGCGGATTGAGTCGATCACAGCTGCAGCAATCGTCCGATGCGGAGGA
GAGGGAAGGAGAGGCATCATGCGTGCGGACAACAAGCGGTTGAGTTGA
back to top