mRNA_S-firma_F_contig10378.540.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10378.540.1
Unique NamemRNA_S-firma_F_contig10378.540.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10378.540.1 vs. uniprot
Match: UPI000644ACFB (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644ACFB)

HSP 1 Score: 246 bits (629), Expect = 5.010e-73
Identity = 163/444 (36.71%), Postives = 230/444 (51.80%), Query Frame = 1
Query:    1 CHDCGPAVYHQDGASQGTWGVAGCNNWYRGLPWDALDVFVAFSHERVSLPPVAWVNAAHAAGVRVLGTVITEWEAGSKENAALLAAA---PAASAA-----------LAAMAAHYGFDGWLLNVEAPVAGADAAAAMLDFVGRLTADTHAAVPGSMVLWYDALTVTGDVQWQSCLNHANKPFFDACDGIFLDYHWSVGSPAASAEAAGDRHFDVFLGCDVWGRGTPGGGQWNSAAAVEAAAVCGLSSAVFAPAWAYEAQGGKTSAACFAEQEARLWWGNPSTSYDLLNNCGQVGDTAHWEDVVHGGQ----GWGVEKDGTAPGPGTVFVTSHQGCSKTQAVDLATVGLCAADIDGGGASSVTVKEWVK-GTPPNTADGYTLSVSVLDGGGAVLATHTADVARTCGEWERAAVAVGRVPPGARLLSVTHGGHDAEGWAGHFGSRM 1275
            CHD        +  S     ++  NN Y    W  +D+F+ F+H+ +++PPV+W+  AH  GV+V+GTVITEWE G K+   L+      P  S             L  +A HY FDGW +N+E+P+  ++       F+G LT   H  +PGS+++WYD++T  G ++WQ+ LN  NK FFD CDGIFL+Y W       SA  AG     +++G DVWGRGT GGG +NS   VE A   G+S+A+FAP W +E+   K+S      +EA LW G      +L+ N     +   W  +V  G     GWGV+ DG   G G  FV+SH+  S +Q VDL  V    A  D   +S V   E+   GT P   D   + + V D    VL T  +    T  +++R    +   P GAR +++   G D E WAG FGSR+
Sbjct:   57 CHDMMGGYLDHEVDSFNLTSMSSTNNHYLFQHWQLIDIFIYFTHQCITIPPVSWIECAHKNGVKVMGTVITEWEQGIKDACRLVRGPYFDPDNSDGDDRDHSIFIRKLVDIAKHYRFDGWFINIESPLPSSEYGVRYQLFLGELTRMMHEEIPGSLMIWYDSVTTEGALKWQNELNVHNKAFFDQCDGIFLNYKWDESMIKQSAILAGSTSHQIYVGTDVWGRGTFGGGHFNSHIGVEKAIENGMSAALFAPGWTFESN--KSSKTISNLREATLWTGVRGRQ-NLIKNGSANNNMDGW--IVEMGDAPCDGWGVD-DGGING-GKAFVSSHEWSSMSQEVDLEVV----ASTDILSSSPVIELEFYHCGTGPKYNDLLRVKLEVRDISHKVLITFESGDITTQKDYKRFRHTISEYPSGARYINLIFTGKDVERWAGRFGSRI 489          
BLAST of mRNA_S-firma_F_contig10378.540.1 vs. uniprot
Match: D3BCG8_POLPP (Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BCG8_POLPP)

HSP 1 Score: 251 bits (642), Expect = 1.850e-70
Identity = 139/402 (34.58%), Postives = 219/402 (54.48%), Query Frame = 1
Query:   73 NNWYRGLPWDALDVFVAFSHERVSLPPVAWVNAAHAAGVRVLGTVITEWEAGSKENAALLAAAPAASA-ALAAMAAHYGFDGWLLNVEAPVAGADAAAAMLDFVGRLTADTHAAVPGSMVLWYDALTVTGDVQWQSCLNHANKPFFDACDGIFLDYHWSVGSPAASAEAAGDRHFDVFLGCDVWGRGTPGGGQWNSAAAVEAAAVCGLSSAVFAPAWAYEAQGGKTSAACFAEQEARLWWGNPSTSYDLLNNCGQVGDTAHWEDVVHGGQGWGVEKDGTAPGPGTVFVTSHQGCSKTQAVDLATVGLCAADIDGGGASSVTVKEWVKGTPPNTADGYTLSVSVLDGGGAVLATHTADVARTCGEWERAAVAVGRVPPGARLLSVTHGGHDAEGWAGHFGSRM 1275
            +N Y    W  +D F+ FSH+R+++PPV W++++H  GV+++GT+ITEWE G  +   L+    A     L A+A +Y FDGW +N+E+ +     A + + F+   T   H  +PGS+VLWYD++T TG+++WQ+ LN  N  +F  CDGIFL+Y W +     S+  A  R   V++G DVWGRGT GGG+ N+   VE +   GLS+A+FAP W +E    ++S   +  +E++LW  N      ++N   +  D + W    HGG  WG+ +DG     G  FV+S Q  + +Q +DL   G     ++      + ++ +  G  P  AD     + + D    V+ T    V  T  E+ +    +   P GAR ++++  G D E WAG FGS++
Sbjct:  616 SNHYSFQYWQLIDTFIYFSHKRITIPPVGWIDSSHRNGVKIVGTIITEWEGGLSDAIRLVGEHSALYIDQLIAIAKYYAFDGWFINIESNIDDVGVAKSYMVFLKEFTERMHKEMPGSLVLWYDSITDTGELKWQNMLNEKNDCYFQRCDGIFLNYKWDIEMLKQSSLLAKHRASQVYVGTDVWGRGTFGGGKLNTHIGVEESIKNGLSTALFAPGWTWETN--RSSKKIYHSKESQLWVSNL-----VVNASAESNDLSDWTITEHGGDNWGISQDGL--NSGNAFVSSFQWSTMSQEIDLVKSGYSIRLLNS--IPIIDIEFYYSGNGPKYADLLQFKLEISDENHKVIYTLDTGVLTTSKEFTQYRNTISEYPVGARYITLSFRGKDIENWAGRFGSKV 1006          
BLAST of mRNA_S-firma_F_contig10378.540.1 vs. uniprot
Match: A0A6B2KYC7_9EUKA (Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KYC7_9EUKA)

HSP 1 Score: 237 bits (604), Expect = 5.060e-67
Identity = 144/401 (35.91%), Postives = 214/401 (53.37%), Query Frame = 1
Query:   97 WDALDVFVAFSHERVSLPPVAWVNAAHAAGVRVLGTVITEWEAGSKENAALLAAA----PAASAALAAMAAHYGFDGWLLNVEAPVAGADAAAAMLDFVGRLTADTHAAVPGSMVLWYDALTVTGDVQWQSCLNHANKPFFDACDGIFLDYHWSVGSPAASAEAAGDRHFDVFLGCDVWGRGTPGGGQWNSAAAVEAAAVCG---LSSAVFAPAWAYEAQGGKTSAACFAEQEARLWWGNPSTSYDLLNNCGQVGDTAHWEDVVHGGQGWGVEKDGTAPGPGTV---FVTSHQGCSKTQAVDLATVGLCAADIDGGGASSVTVKEWVKGTPPNTADGYTLSVSVLDGGGAVLATHTADVARTCGEWERAAVAVGRVPPGARLLSVTHGGHDAEGWAGHFGS 1269
            W  +D+F+ FSH+R+++PP +W + AH  GV+VLGT ITEWE G  +N+ LL       P A   +  +A  Y FDGW  N E+  +  D    +L F+  +T   H  +PGS++LWYD++  TG V WQ+ LN  NK FFD CDGIFL+Y W+    + S+  AG+R  DVF G D++GRGT GGG + +  A+E          S A+FAP W  E Q    +   F   E++ W G    +   ++N         W+      +GW  + +   P  G     +VTS + C +++ +DL  +GL    ++     + +V  W+KGTPPNTAD Y L +++LD    V+ ++ + +  T  EWE     +     G R +S   GG D E W GH+G+
Sbjct:   59 WQFIDIFIYFSHDRITIPPPSWTSVAHKNGVKVLGTFITEWEGGLADNSLLLTQQGDTFPYADQMIE-IAKFYQFDGWFFNFESHFSP-DQIPNLLKFLQYITQKIHQVLPGSLILWYDSVITTGKVAWQNALNPLNKIFFDGCDGIFLNYGWNEKLISESSSLAGERKLDVFTGIDIFGRGTFGGGGFQTHKALEVIHNQSNPLTSIALFAPGWTLECQ--SQNRKTFDLTESKYWTGRNFINVMAMSNT-------PWD--FQNKEGW-KQTEEVPPHGGKKEESWVTSFKWCKRSKVIDLYELGLSELVLNDSPVLNFSV--WIKGTPPNTADFYFLKITLLDTQKNVIESYDSGILTTSSEWETVETTMANYGTGLRYISWEDGGKDVEYWGGHYGA 443          
BLAST of mRNA_S-firma_F_contig10378.540.1 vs. uniprot
Match: A0A8J4PY06_9MYCE (Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase n=2 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PY06_9MYCE)

HSP 1 Score: 234 bits (596), Expect = 1.020e-64
Identity = 146/401 (36.41%), Postives = 215/401 (53.62%), Query Frame = 1
Query:   97 WDALDVFVAFSHERVSLPPVAWVNAAHAAGVRVLGTVITEWEAGSKENAALLAAAPAA----SAALAAMAAHYGFDGWLLNVEAPVAGADAAAAMLDFVGRLTADTHAAVPGSMVLWYDALTVTGDVQWQSCLNHANKPFFDACDGIFLDYHWSVGSPAASAEAAGD-RHFDVFLGCDVWGRGTPGGGQWNSAAAVEAAAVCGLSSAVFAPAWAYEAQGGKTSAACFAEQEARLWWGNPSTSYDLLNN--CGQVGDTAHWEDVVHGGQGWGVEKDGTAPGPGTVFVTSHQGCSKTQAVDLATVGLCAADIDGGGASSVTVKEWVKGTPPNTADGYTLSVSVLDGGGAVLATHTADVARTCGEWERAAVAVGRVPPGA-RLLSVTHGGHDAEGWAGHFGSRM 1275
            W+ +D+F  FSH R+++PPV+W+NAAH  GV+VLGTVI EW+    +   L+          +  L  +   YGFDGWL+NVE  +  A+ A     F+  LT   H  VP S+V+WYD++ + G + WQ+ LN  N  FF +CDGIFL+Y W     A S   AG  R  DVF+G DVWGRGT GGG  N+   +  A   GLSSA+F P W++E     +S     E+E+ LW  N     +LL N  C +  D + W+   +GG GWGV + G     G  FV+S++ C+K+  +DL   G   A +D   A S+  + +  GT PN  D   +   +LD    ++A + +    T  +++R  + +   PP   + +       D E WAG +G+++
Sbjct:  304 WNLVDIFNYFSHHRITVPPVSWINAAHRNGVKVLGTVILEWDEAVSDACLLVDGIDGDPYYFANKLIQLCQVYGFDGWLMNVECNLPSAEYADKYCKFLRYLTDHLHQCVPESLVIWYDSVCMNGKLVWQNELNSNNHSFFMSCDGIFLNYRWDENKLADSFLCAGPARARDVFVGTDVWGRGTYGGGGLNTHKGLSVANRFGLSSAIFGPGWSHENT--HSSLKIIREKESSLW-NNTVIGLNLLENGSC-ENNDLSFWKIEENGGDGWGVTESGQGINGGKAFVSSYKWCTKSFLIDLELNGFDRAHLDQ--APSIEYEFYYCGTGPNNEDLIRVEFELLDANNEIVAKYHSREIVTGEQYKRFTLLITDYPPETLKYIYCKISCRDKENWAGRYGAKV 698          
BLAST of mRNA_S-firma_F_contig10378.540.1 vs. uniprot
Match: G7J2C1_MEDTR (Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase n=2 Tax=Medicago truncatula TaxID=3880 RepID=G7J2C1_MEDTR)

HSP 1 Score: 226 bits (577), Expect = 1.290e-63
Identity = 139/350 (39.71%), Postives = 191/350 (54.57%), Query Frame = 1
Query:    1 CHDCGPAVYHQDGASQGTWGVAGCNNWYRGLPWDALDVFVAFSHERVSLPPVAWVNAAHAAGVRVLGTVITEWEAGSKENAALLAAAPAA---SAALAAMAAHYGFDGWLLNVEAPVAGADAAAAMLDFVGRLTADTHAAVPGSMVLWYDALTVTGDVQWQSCLNHANKPFFDACDGIFLDYHWSVGSPAASAEAAGDRHFDVFLGCDVWGRGTPGGGQWNSAAAVEAAAVCGLSSAVFAPAWAYEAQGGKTSAACFAEQEARLWWGNPSTSYDLLNN-CGQVGDTAHWEDVVHGGQGWGVEKDGTAPGPGTVFVTSHQG-------CSKTQAVDLATVGLCAADIDGGG 1017
            CHD     Y  D   QG   V   + W+    W  +DVFV FSH+ V+LPPV W+N AH  GV+VLGT ITEW+ G      LL+   +A   +  LA +A   GFDGWL+N+E  +  A  +  + +FV  L++  H++VPGS VLWYD++T+ G + WQ  LN +NKPFFD CDGIF++Y W    P  SA  AGDR FDV++G DV+GR T GGGQWN+  A++      +S+A+FAP W YE     T      E     WWG    S+ +L N  G +    +++     G+G+ +  DG +    T    S QG          T ++ + T+ L  A   GGG
Sbjct:  106 CHDMAGG-YSDDKWIQGGDNVNAYSIWH----WHLIDVFVYFSHDLVTLPPVCWINTAHRHGVKVLGTFITEWDEGKANCDVLLSTKESAQMYAERLAELAVDLGFDGWLINMEVELDPAQISN-LKEFVDHLSSTMHSSVPGSQVLWYDSVTIDGKLNWQDQLNESNKPFFDICDGIFVNYTWKEDYPRISAAVAGDRKFDVYMGIDVFGRNTYGGGQWNANVALDVIRKNDVSAAIFAPGWVYE-----TKQPPDFETAQNSWWGLVEKSWGILRNFSGPLPLYTNFDQ----GRGYHISVDGNSVSDATWCNISCQGFQPLLELADPTNSIQV-TIDLKEASFSGGG 439          
BLAST of mRNA_S-firma_F_contig10378.540.1 vs. uniprot
Match: A0A368QJT2_SETIT (Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase n=5 Tax=Setaria TaxID=4554 RepID=A0A368QJT2_SETIT)

HSP 1 Score: 223 bits (569), Expect = 1.910e-62
Identity = 125/276 (45.29%), Postives = 159/276 (57.61%), Query Frame = 1
Query:    1 CHDCGPAVYHQDGASQGTWGVAGCNNWYRGLPWDALDVFVAFSHERVSLPPVAWVNAAHAAGVRVLGTVITEWEAGS---KENAALLAAAPAASAALAAMAAHYGFDGWLLNVEAPVAGADAAAAMLDFVGRLTADTHAAVPGSMVLWYDALTVTGDVQWQSCLNHANKPFFDACDGIFLDYHWSVGSPAASAEAAGDRHFDVFLGCDVWGRGTPGGGQWNSAAAVEAAAVCGLSSAVFAPAWAYEAQGGKTSAACFAEQEARLWWGNPSTSYDLL 819
            CHD     Y  D A+QG         W+    W  +DVFV FSH  V+LPP  W NAAH  GV+VLGT ITEW+ G+   KE  A  A+A   +  L  +AA  GFDGWL+N+E  +        + +FV  LT   HAAVPGS+V+WYDA+TV GD+ WQ+ LN  NKPFFD CDG+F +Y W    P  SA  AGDR +DV++G DV+GR T GGGQW +  A++      +S+A+FAP W YE     T      E     WWG    S+ +L
Sbjct:   99 CHDM-EGGYRDDAAAQGGGNPDAYALWH----WHLIDVFVYFSHYLVTLPPPCWTNAAHLHGVKVLGTFITEWDKGAEVCKEMLATEASAQMYAERLTELAAALGFDGWLINIEVKL-DVQFIDNLKEFVNHLTKTMHAAVPGSLVIWYDAITVKGDLDWQNKLNKYNKPFFDLCDGLFANYTWKKKDPEDSAAVAGDRKYDVYMGIDVFGRNTFGGGQWTTNVALDLLKKVDVSTAIFAPGWVYE-----TKQPPDFESAQNRWWGLVEKSWGVL 363          
BLAST of mRNA_S-firma_F_contig10378.540.1 vs. uniprot
Match: A0A484LVL8_9ASTE (Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484LVL8_9ASTE)

HSP 1 Score: 216 bits (550), Expect = 2.620e-62
Identity = 119/286 (41.61%), Postives = 161/286 (56.29%), Query Frame = 1
Query:    1 CHDC----GPAVYHQDGASQGTWGVAGCNNWYRGLPWDALDVFVAFSHERVSLPPVAWVNAAHAAGVRVLGTVITEWEAGSKENAALLAAAPAA---SAALAAMAAHYGFDGWLLNVEAPVAGADAAAAMLDFVGRLTADTHAAVPGSMVLWYDALTVTGDVQWQSCLNHANKPFFDACDGIFLDYHWSVGSPAASAEAAGDRHFDVFLGCDVWGRGTPGGGQWNSAAAVEAAAVCGLSSAVFAPAWAYEAQGGKTSAACFAEQEARLWWGNPSTSYDLLNNCGQV 837
            CHD     G   + Q G +   +G+     W+    W  +DVFV FSH  V+LPP  W N AH  GV+VLGT I EWE G      LL+   +A   +  L  +A   GFDGWL+N+E  +        +++FV  LT   H++VPGS+V+WYD++T  G++ WQ+ LN  NKPFFDACDGIFL+Y W    P  SA  AG+R FDV++G DV+GR T GGGQWN+  A++      +S+A+FAP W YE     T+     +     WWG    S+ +  N  Q 
Sbjct:  109 CHDMAGGYGDDQWVQGGTNPSAYGI-----WH----WYLMDVFVYFSHSLVTLPPPCWTNTAHKHGVKVLGTFIMEWEEGKSLANKLLSTKESAYMYAERLTELAVALGFDGWLINLEVDL-DVGKLPTLVEFVNHLTQTMHSSVPGSLVIWYDSVTTDGELSWQNKLNEKNKPFFDACDGIFLNYSWEESYPMESASVAGERKFDVYMGIDVFGRNTFGGGQWNTNVALDVIKKDNVSAAIFAPGWVYE-----TNQPPDFQTSQNRWWGLVEKSWGISQNYPQT 379          
BLAST of mRNA_S-firma_F_contig10378.540.1 vs. uniprot
Match: A0A484NGS5_9ASTE (Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase n=2 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A484NGS5_9ASTE)

HSP 1 Score: 216 bits (551), Expect = 3.780e-62
Identity = 119/286 (41.61%), Postives = 162/286 (56.64%), Query Frame = 1
Query:    1 CHDC----GPAVYHQDGASQGTWGVAGCNNWYRGLPWDALDVFVAFSHERVSLPPVAWVNAAHAAGVRVLGTVITEWEAGSKENAALLAAAPAA---SAALAAMAAHYGFDGWLLNVEAPVAGADAAAAMLDFVGRLTADTHAAVPGSMVLWYDALTVTGDVQWQSCLNHANKPFFDACDGIFLDYHWSVGSPAASAEAAGDRHFDVFLGCDVWGRGTPGGGQWNSAAAVEAAAVCGLSSAVFAPAWAYEAQGGKTSAACFAEQEARLWWGNPSTSYDLLNNCGQV 837
            CHD     G   + Q G +   +G+     W+    W  +DVFV FSH  V+LPP  W N AH  GV+VLGT I EWE G      LL+   +A   +  L  +A   GFDGWL+N+E  +        +++FV  LT   H++VPGS+V+WYD++T  G++ WQ+ LN  NKPFFDACDGIFL+Y W    P  SA  AG+R+FDV++G DV+GR T GGGQWN+  A++      +S+A+FAP W YE     T+     +     WWG    S+ +  N  Q 
Sbjct:   73 CHDMAGGYGDDKWVQGGTNPSAYGI-----WH----WYLMDVFVYFSHSLVTLPPPCWTNTAHKHGVKVLGTFIMEWEEGKSLANKLLSTKESAYMYADRLTELAVALGFDGWLINLEVEL-DVGKLPTLVEFVNHLTQTMHSSVPGSLVIWYDSVTTDGELSWQNKLNEKNKPFFDACDGIFLNYSWEESYPMESASVAGERNFDVYMGIDVFGRNTFGGGQWNTNVALDVIKKDNVSAAIFAPGWVYE-----TNQPPDFQTSQNRWWGLVEKSWGISQNYPQT 343          
BLAST of mRNA_S-firma_F_contig10378.540.1 vs. uniprot
Match: UPI001F5CF2F4 (cytosolic endo-beta-N-acetylglucosaminidase 1-like n=2 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5CF2F4)

HSP 1 Score: 221 bits (563), Expect = 1.180e-61
Identity = 125/278 (44.96%), Postives = 162/278 (58.27%), Query Frame = 1
Query:    1 CHDCGPAVYHQDGASQGTWGVAGCNNWYRGLPWDALDVFVAFSHERVSLPPVAWVNAAHAAGVRVLGTVITEWEAGSKENAALLAAAPAA---SAALAAMAAHYGFDGWLLNVEAPVAGADAAAAMLDFVGRLTADTHAAVPGSMVLWYDALTVTGDVQWQSCLNHANKPFFDACDGIFLDYHWSVGSPAASAEAAGDRHFDVFLGCDVWGRGTPGGGQWNSAAAVEAAAVCGLSSAVFAPAWAYEAQGGKTSAACFAEQEARLWWGNPSTSYDLLNN 825
            CHD     Y  D A QG         W+    W  +DVFV FSH  V+LPP  W NAAH  GV+VLGT ITEWE G++    + A   +A   +  LA +AA  GFDGWL+N+E  +        + +FV  LT   HAAVPGS+V+WYDA+TV GD+ WQ  LN  NKPFFD CDGIF++Y W    P  SA AAGDR +DV++G DV+GR T GGGQW++  A++      +S+A+FAP W YE     T+     +     WWG    S+ +L +
Sbjct:   83 CHDM-QGGYGDDAAPQGGANPDAYALWH----WHLMDVFVYFSHYLVTLPPPCWTNAAHLHGVKVLGTFITEWEKGAEICREMFATEDSAHMYAERLAELAAALGFDGWLINIEVKL-DIQFIDNLKEFVNHLTKTMHAAVPGSLVIWYDAVTVNGDLGWQDKLNKYNKPFFDLCDGIFVNYTWKEKYPQDSAAAAGDRKYDVYMGIDVFGRNTYGGGQWDTNVALDLLKKDDISTAIFAPGWIYE-----TNQPPDFQSAQNRWWGLVENSWGVLQS 349          
BLAST of mRNA_S-firma_F_contig10378.540.1 vs. uniprot
Match: A0A3L6SZ67_PANMI (Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase n=1 Tax=Panicum miliaceum TaxID=4540 RepID=A0A3L6SZ67_PANMI)

HSP 1 Score: 213 bits (543), Expect = 1.400e-61
Identity = 121/276 (43.84%), Postives = 155/276 (56.16%), Query Frame = 1
Query:    1 CHDCGPAVYHQDGASQGTWGVAGCNNWYRGLPWDALDVFVAFSHERVSLPPVAWVNAAHAAGVRVLGTVITEWEAGS---KENAALLAAAPAASAALAAMAAHYGFDGWLLNVEAPVAGADAAAAMLDFVGRLTADTHAAVPGSMVLWYDALTVTGDVQWQSCLNHANKPFFDACDGIFLDYHWSVGSPAASAEAAGDRHFDVFLGCDVWGRGTPGGGQWNSAAAVEAAAVCGLSSAVFAPAWAYEAQGGKTSAACFAEQEARLWWGNPSTSYDLL 819
            CHD     Y  D A QG         W+    W  +DVFV FSH  ++LPP  W NAAH  GV+VLG  ITEW+ G+   KE  A  A+A   +  L  +A   GFDGWL+N+E  +        + +FV  LT   HAAVPGS+V+WYDA+TV GD+ WQ+ LN  NKPFFD CDG+F +Y W       SA  AGDR +DV++G DV+GR T GGGQW +  A++      +S+A+FAP W YE     T      E     WWG    S+ +L
Sbjct:   99 CHDM-EGGYRDDAAPQGGANPDAYALWH----WHLVDVFVYFSHYLITLPPPCWTNAAHLHGVKVLGAFITEWDKGAEVCKEMFATEASAQMYAERLTELATVLGFDGWLINIEVKL-DIQFIDNLKEFVNHLTKTMHAAVPGSLVIWYDAITVKGDLDWQNKLNEYNKPFFDLCDGLFANYTWKKKDLQDSATVAGDRKYDVYMGIDVFGRNTFGGGQWTTNVALDLLKKVDVSTAIFAPGWVYE-----TKQPPDFENAQNRWWGLVEKSWGVL 363          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10378.540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000644ACFB5.010e-7336.71hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
D3BCG8_POLPP1.850e-7034.58Succinate--CoA ligase [ADP/GDP-forming] subunit al... [more]
A0A6B2KYC7_9EUKA5.060e-6735.91Mannosyl-glycoprotein endo-beta-N-acetylglucosamin... [more]
A0A8J4PY06_9MYCE1.020e-6436.41Mannosyl-glycoprotein endo-beta-N-acetylglucosamin... [more]
G7J2C1_MEDTR1.290e-6339.71Mannosyl-glycoprotein endo-beta-N-acetylglucosamin... [more]
A0A368QJT2_SETIT1.910e-6245.29Mannosyl-glycoprotein endo-beta-N-acetylglucosamin... [more]
A0A484LVL8_9ASTE2.620e-6241.61Mannosyl-glycoprotein endo-beta-N-acetylglucosamin... [more]
A0A484NGS5_9ASTE3.780e-6241.61Mannosyl-glycoprotein endo-beta-N-acetylglucosamin... [more]
UPI001F5CF2F41.180e-6144.96cytosolic endo-beta-N-acetylglucosaminidase 1-like... [more]
A0A3L6SZ67_PANMI1.400e-6143.84Mannosyl-glycoprotein endo-beta-N-acetylglucosamin... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10378contigS-firma_F_contig10378:1803..3131 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog4555.Si021368m
PFAMsGlyco_hydro_85
Max annot lvl35493|Streptophyta
KEGG koko:K01227
KEGG Pathwayko00511,map00511
GOsGO:0000270,GO:0000323,GO:0003674,GO:0003824,GO:0004553,GO:0004563,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005773,GO:0005975,GO:0006022,GO:0006026,GO:0006027,GO:0006464,GO:0006491,GO:0006517,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009100,GO:0009253,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0015929,GO:0016052,GO:0016231,GO:0016787,GO:0016798,GO:0019538,GO:0030203,GO:0033925,GO:0035821,GO:0036211,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044033,GO:0044035,GO:0044040,GO:0044041,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044278,GO:0044419,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051672,GO:0051704,GO:0051707,GO:0071704,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575
Evalue2.34e-63
EggNOG OGsCOG4724@1|root,KOG2331@2759|Eukaryota,37I83@33090|Viridiplantae,3G92X@35493|Streptophyta,3KPTZ@4447|Liliopsida,3I4BC@38820|Poales
EC3.2.1.96
DescriptionGlycosyl hydrolase family 85
COG categoryG
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size1275
Cds size1275
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815569.9456754-CDS-S-firma_F_contig10378:1802..25811622815569.9456754-CDS-S-firma_F_contig10378:1802..2581Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10378 1803..2581 +
1696949423.3002937-CDS-S-firma_F_contig10378:1802..25811696949423.3002937-CDS-S-firma_F_contig10378:1802..2581Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10378 1803..2581 +
1622815569.958035-CDS-S-firma_F_contig10378:2635..31311622815569.958035-CDS-S-firma_F_contig10378:2635..3131Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10378 2636..3131 +
1696949423.3249605-CDS-S-firma_F_contig10378:2635..31311696949423.3249605-CDS-S-firma_F_contig10378:2635..3131Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10378 2636..3131 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10378.540.1prot_S-firma_F_contig10378.540.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10378 1803..3131 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10378.540.1

>prot_S-firma_F_contig10378.540.1 ID=prot_S-firma_F_contig10378.540.1|Name=mRNA_S-firma_F_contig10378.540.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=425bp
CHDCGPAVYHQDGASQGTWGVAGCNNWYRGLPWDALDVFVAFSHERVSLP
PVAWVNAAHAAGVRVLGTVITEWEAGSKENAALLAAAPAASAALAAMAAH
YGFDGWLLNVEAPVAGADAAAAMLDFVGRLTADTHAAVPGSMVLWYDALT
VTGDVQWQSCLNHANKPFFDACDGIFLDYHWSVGSPAASAEAAGDRHFDV
FLGCDVWGRGTPGGGQWNSAAAVEAAAVCGLSSAVFAPAWAYEAQGGKTS
AACFAEQEARLWWGNPSTSYDLLNNCGQVGDTAHWEDVVHGGQGWGVEKD
GTAPGPGTVFVTSHQGCSKTQAVDLATVGLCAADIDGGGASSVTVKEWVK
GTPPNTADGYTLSVSVLDGGGAVLATHTADVARTCGEWERAAVAVGRVPP
GARLLSVTHGGHDAEGWAGHFGSRM
back to top

mRNA from alignment at S-firma_F_contig10378:1803..3131+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10378.540.1 ID=mRNA_S-firma_F_contig10378.540.1|Name=mRNA_S-firma_F_contig10378.540.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1329bp|location=Sequence derived from alignment at S-firma_F_contig10378:1803..3131+ (Sphaerotrichia firma ET2_F female)
TGTCATGACTGTGGGCCGGCGGTGTACCACCAGGACGGCGCGTCGCAGGG CACGTGGGGGGTGGCAGGCTGCAACAACTGGTACCGTGGCCTGCCGTGGG ATGCGCTGGACGTGTTTGTCGCGTTTTCACACGAGCGCGTGTCGTTGCCG CCAGTGGCATGGGTCAACGCCGCCCACGCTGCGGGCGTGCGTGTCCTGGG CACGGTCATCACGGAGTGGGAGGCGGGCTCCAAGGAAAACGCGGCGTTGC TGGCGGCGGCACCGGCGGCGTCGGCTGCCCTGGCCGCCATGGCCGCACAC TACGGCTTTGACGGGTGGCTGCTTAACGTTGAGGCCCCTGTCGCCGGGGC TGACGCCGCCGCCGCCATGCTGGATTTTGTGGGGCGCTTGACCGCCGACA CCCATGCTGCGGTGCCGGGGTCCATGGTGCTGTGGTACGACGCCCTCACC GTCACCGGCGACGTCCAGTGGCAGTCCTGCCTGAACCACGCCAACAAACC CTTTTTTGACGCCTGCGACGGCATTTTTTTGGACTACCACTGGTCTGTGG GCTCCCCCGCGGCATCCGCGGAGGCCGCCGGCGACCGGCACTTTGACGTG TTTCTTGGGTGCGACGTGTGGGGACGGGGGACACCGGGGGGCGGCCAGTG GAACAGCGCAGCGGCAGTTGAGGCGGCGGCCGTGTGTGGGCTGTCAAGTG CTGTGTTTGCGCCGGCATGGGCGTACGAGGCGCAAGGTGGCAAGACCAGT GCGGCGTGCTTCGCGGAGCAGGAGGCGAGGTGGGTGGGTGGCCGTGCGGA AGTCCCGCTTTCCTTCACCCGTTGTGCGCGCAGGCTGTGGTGGGGCAACC CCTCCACTTCCTACGACCTCCTCAACAACTGCGGTCAAGTGGGGGACACG GCGCACTGGGAGGACGTTGTGCACGGCGGCCAGGGGTGGGGCGTGGAGAA GGACGGCACCGCGCCAGGCCCAGGCACGGTGTTTGTCACCTCCCACCAGG GCTGCAGCAAAACCCAGGCAGTGGACCTTGCCACGGTGGGACTGTGTGCC GCTGACATTGACGGTGGCGGTGCCTCCTCGGTGACCGTCAAGGAGTGGGT GAAGGGCACACCGCCCAACACCGCAGACGGCTACACTCTGTCCGTGAGTG TGCTGGACGGCGGCGGGGCCGTCCTGGCCACCCACACCGCGGACGTGGCG CGGACATGCGGGGAGTGGGAACGGGCGGCTGTGGCGGTGGGGCGTGTCCC ACCCGGCGCCCGGCTCCTTTCCGTGACGCACGGTGGCCACGACGCCGAGG GCTGGGCCGGCCACTTTGGCAGCCGCATG
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10378:1803..3131+

>mRNA_S-firma_F_contig10378.540.1 ID=mRNA_S-firma_F_contig10378.540.1|Name=mRNA_S-firma_F_contig10378.540.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2550bp|location=Sequence derived from alignment at S-firma_F_contig10378:1803..3131+ (Sphaerotrichia firma ET2_F female)
TGTCATGACTGTGGGCCGGCGGTGTACCACCAGGACGGCGCGTCGCAGGG
CACGTGGGGGGTGGCAGGCTGCAACAACTGGTACCGTGGCCTGCCGTGGG
ATGCGCTGGACGTGTTTGTCGCGTTTTCACACGAGCGCGTGTCGTTGCCG
CCAGTGGCATGGGTCAACGCCGCCCACGCTGCGGGCGTGCGTGTCCTGGG
CACGGTCATCACGGAGTGGGAGGCGGGCTCCAAGGAAAACGCGGCGTTGC
TGGCGGCGGCACCGGCGGCGTCGGCTGCCCTGGCCGCCATGGCCGCACAC
TACGGCTTTGACGGGTGGCTGCTTAACGTTGAGGCCCCTGTCGCCGGGGC
TGACGCCGCCGCCGCCATGCTGGATTTTGTGGGGCGCTTGACCGCCGACA
CCCATGCTGCGGTGCCGGGGTCCATGGTGCTGTGGTACGACGCCCTCACC
GTCACCGGCGACGTCCAGTGGCAGTCCTGCCTGAACCACGCCAACAAACC
CTTTTTTGACGCCTGCGACGGCATTTTTTTGGACTACCACTGGTCTGTGG
GCTCCCCCGCGGCATCCGCGGAGGCCGCCGGCGACCGGCACTTTGACGTG
TTTCTTGGGTGCGACGTGTGGGGACGGGGGACACCGGGGGGCGGCCAGTG
GAACAGCGCAGCGGCAGTTGAGGCGGCGGCCGTGTGTGGGCTGTCAAGTG
CTGTGTTTGCGCCGGCATGGGCGTACGAGGCGCAAGGTGGCAAGACCAGT
GCGGCGTGCTTCGCGGAGCAGGAGGCGAGTGTCATGACTGTGGGCCGGCG
GTGTACCACCAGGACGGCGCGTCGCAGGGCACGTGGGGGGTGGCAGGCTG
CAACAACTGGTACCGTGGCCTGCCGTGGGATGCGCTGGACGTGTTTGTCG
CGTTTTCACACGAGCGCGTGTCGTTGCCGCCAGTGGCATGGGTCAACGCC
GCCCACGCTGCGGGCGTGCGTGTCCTGGGCACGGTCATCACGGAGTGGGA
GGCGGGCTCCAAGGAAAACGCGGCGTTGCTGGCGGCGGCACCGGCGGCGT
CGGCTGCCCTGGCCGCCATGGCCGCACACTACGGCTTTGACGGGTGGCTG
CTTAACGTTGAGGCCCCTGTCGCCGGGGCTGACGCCGCCGCCGCCATGCT
GGATTTTGTGGGGCGCTTGACCGCCGACACCCATGCTGCGGTGCCGGGGT
CCATGGTGCTGTGGTACGACGCCCTCACCGTCACCGGCGACGTCCAGTGG
CAGTCCTGCCTGAACCACGCCAACAAACCCTTTTTTGACGCCTGCGACGG
CATTTTTTTGGACTACCACTGGTCTGTGGGCTCCCCCGCGGCATCCGCGG
AGGCCGCCGGCGACCGGCACTTTGACGTGTTTCTTGGGTGCGACGTGTGG
GGACGGGGGACACCGGGGGGCGGCCAGTGGAACAGCGCAGCGGCAGTTGA
GGCGGCGGCCGTGTGTGGGCTGTCAAGTGCTGTGTTTGCGCCGGCATGGG
CGTACGAGGCGCAAGGTGGCAAGACCAGTGCGGCGTGCTTCGCGGAGCAG
GAGGCGAGGCTGTGGTGGGGCAACCCCTCCACTTCCTACGACCTCCTCAA
CAACTGCGGTCAAGTGGGGGACACGGCGCACTGGGAGGACGTTGTGCACG
GCGGCCAGGGGTGGGGCGTGGAGAAGGACGGCACCGCGCCAGGCCCAGGC
ACGGTGTTTGTCACCTCCCACCAGGGCTGCAGCAAAACCCAGGCAGTGGA
CCTTGCCACGGTGGGACTGTGTGCCGCTGACATTGACGGTGGCGGTGCCT
CCTCGGTGACCGTCAAGGAGTGGGTGAAGGGCACACCGCCCAACACCGCA
GACGGCTACACTCTGTCCGTGAGTGTGCTGGACGGCGGCGGGGCCGTCCT
GGCCACCCACACCGCGGACGTGGCGCGGACATGCGGGGAGTGGGAACGGG
CGGCTGTGGCGGTGGGGCGTGTCCCACCCGGCGCCCGGCTCCTTTCCGTG
ACGCACGGTGGCCACGACGCCGAGGGCTGGGCCGGCCACTTTGGCAGCCG
CATGGCTGTGGTGGGGCAACCCCTCCACTTCCTACGACCTCCTCAACAAC
TGCGGTCAAGTGGGGGACACGGCGCACTGGGAGGACGTTGTGCACGGCGG
CCAGGGGTGGGGCGTGGAGAAGGACGGCACCGCGCCAGGCCCAGGCACGG
TGTTTGTCACCTCCCACCAGGGCTGCAGCAAAACCCAGGCAGTGGACCTT
GCCACGGTGGGACTGTGTGCCGCTGACATTGACGGTGGCGGTGCCTCCTC
GGTGACCGTCAAGGAGTGGGTGAAGGGCACACCGCCCAACACCGCAGACG
GCTACACTCTGTCCGTGAGTGTGCTGGACGGCGGCGGGGCCGTCCTGGCC
ACCCACACCGCGGACGTGGCGCGGACATGCGGGGAGTGGGAACGGGCGGC
TGTGGCGGTGGGGCGTGTCCCACCCGGCGCCCGGCTCCTTTCCGTGACGC
ACGGTGGCCACGACGCCGAGGGCTGGGCCGGCCACTTTGGCAGCCGCATG
back to top