mRNA_S-firma_F_contig10366.520.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10366.520.1
Unique NamemRNA_S-firma_F_contig10366.520.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig10366.520.1 vs. uniprot
Match: A0A6H5LQ87_9PHAE (LETM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQ87_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 5.470e-20
Identity = 65/113 (57.52%), Postives = 69/113 (61.06%), Query Frame = 1 
Query:  355 GGERRPYLAGRSRPAMALGQATQEQQEKGATVDAGEGEPGGAAAAAVANAV-TTSNRTERGQRLRAVNWVKQ---------------------VRNELTSAEFALNLNGAGSG 627
            GG RRPYLAGRSRPAMALGQA Q +Q+ G    A     G   AA   NA+  T+NRTERGQRLRAVNWVKQ                     VRNELTSAEFALNLNGA  G
Sbjct:  143 GGARRPYLAGRSRPAMALGQAMQGRQDGGMAAAAAGXXXGXXEAAGGTNAILATANRTERGQRLRAVNWVKQGAAFMPLMGAACDGRASLSRQVRNELTSAEFALNLNGATRG 255
[Close]
BLAST of mRNA_S-firma_F_contig10366.520.1 vs. uniprot
Match: D8LP03_ECTSI (LETM1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP03_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 1.260e-15
Identity = 50/76 (65.79%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:  400 MALGQATQEQQEKGATVDAGEGEPGGAAAAAVANAVTTSNRTERGQRLRAVNWVKQVRNELTSAEFALNLNGAGSG 627
            MALGQA Q +Q  G     G G   G AA      + T+NRTERGQRLRAVNWVKQVRNELTSAEFALNLNGA  G
Sbjct:    1 MALGQAMQGRQGGGVAAARGGGTGAGEAAGGTKAILATANRTERGQRLRAVNWVKQVRNELTSAEFALNLNGATRG 76
[Close]
BLAST of mRNA_S-firma_F_contig10366.520.1 vs. uniprot
Match: A0A835YNT1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNT1_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 5.230e-7
Identity = 29/41 (70.73%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:  505 VTTSNRTERGQRLRAVNWVKQVRNELTSAEFALNLNGAGSG 627
            +T ++RTERGQ+LRA+NWVKQVRN+LTSAEFAL L+   SG
Sbjct:    3 MTAASRTERGQKLRALNWVKQVRNDLTSAEFALQLDQGLSG 43
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10366.520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5LQ87_9PHAE5.470e-2057.52LETM1 domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LP03_ECTSI1.260e-1565.79LETM1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835YNT1_9STRA5.230e-770.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10366contigS-firma_F_contig10366:3960..5079 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LP03
PFAMsLETM1
Max annot lvl2759|Eukaryota
Evalue2.06e-16
EggNOG OGsKOG1043@1|root,KOG1043@2759|Eukaryota
Descriptioncalcium export from the mitochondrion
COG categoryL
Hectar predicted targeting categoryother localisation
Exons2
Model size633
Cds size633
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815568.6339839-CDS-S-firma_F_contig10366:3959..40251622815568.6339839-CDS-S-firma_F_contig10366:3959..4025Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10366 3960..4025 -
1696949422.2670603-CDS-S-firma_F_contig10366:3959..40251696949422.2670603-CDS-S-firma_F_contig10366:3959..4025Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10366 3960..4025 -
1622815568.646908-CDS-S-firma_F_contig10366:4512..50791622815568.646908-CDS-S-firma_F_contig10366:4512..5079Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10366 4513..5079 -
1696949422.2850788-CDS-S-firma_F_contig10366:4512..50791696949422.2850788-CDS-S-firma_F_contig10366:4512..5079Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10366 4513..5079 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10366.520.1prot_S-firma_F_contig10366.520.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10366 3960..5079 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10366.520.1

>prot_S-firma_F_contig10366.520.1 ID=prot_S-firma_F_contig10366.520.1|Name=mRNA_S-firma_F_contig10366.520.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=211bp
MKQPQPQATALDGGLARRTRASDGTAGRNHVPSSGPPSSSSSRPTRRVRS
DVGVRGRRSGLYSSGGGGGLSASASTGNTNSMTADGVDSSPGGVGPAAAG
QITAGAAGAGTGGVGVGGGGERRPYLAGRSRPAMALGQATQEQQEKGATV
DAGEGEPGGAAAAAVANAVTTSNRTERGQRLRAVNWVKQVRNELTSAEFA
LNLNGAGSGGG
back to top

mRNA from alignment at S-firma_F_contig10366:3960..5079-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10366.520.1 ID=mRNA_S-firma_F_contig10366.520.1|Name=mRNA_S-firma_F_contig10366.520.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1120bp|location=Sequence derived from alignment at S-firma_F_contig10366:3960..5079- (Sphaerotrichia firma ET2_F female)
ATGAAACAACCTCAACCTCAGGCGACCGCCCTGGACGGCGGCCTAGCCCG
GCGAACTCGCGCATCCGACGGTACCGCCGGCCGGAACCACGTCCCGTCCT
CGGGCCCCCCTTCTTCTTCCTCTTCCCGCCCGACCCGCCGAGTGAGGAGC
GACGTCGGTGTTCGCGGCCGCCGAAGCGGACTCTACAGCAGCGGCGGCGG
CGGCGGGTTGAGCGCCAGCGCAAGCACCGGGAACACAAACAGCATGACCG
CCGACGGCGTGGACAGCAGCCCCGGCGGCGTTGGCCCCGCGGCCGCCGGC
CAAATAACGGCGGGGGCCGCCGGCGCGGGAACAGGCGGGGTGGGGGTTGG
AGGCGGAGGGGAGCGGAGACCGTACCTCGCGGGGCGGAGTCGACCGGCCA
TGGCGCTCGGGCAAGCGACGCAGGAGCAGCAGGAAAAGGGGGCGACAGTG
GATGCGGGGGAGGGTGAGCCTGGTGGGGCGGCGGCGGCGGCGGTGGCGAA
CGCGGTGACTACCAGCAATCGGACGGAGAGAGGGCAGCGGCTTCGCGCGG
TGAACTGGGTCAAACAGGTGGGGGTGTGGCGCTGTTGAGGCATGCAGTCG
GAGGGCGTAGGATAGGCGTGGGCTGAAAGCTGTTGTCGTCGTGGATGCGT
GCTTTGCTGCTTAGTATTTCGTCGAACATGCCGGAACATAAGAGTAGGCG
GAAGGGGGGACTCTCCCCGCACGATCGAGAGGAGACCACCCGTATAGAGG
CCGTGGATCGACTCTTGCATACCGCACATGATACACGGTGCACCTCACAC
CCGGATGGGAGCCTTTAGGGCTTGATGTCTTTCTCGGCCCTTGTGGTAGG
CTGGCTCCAAGCACAGCGCACCCTCACAAGCACAGAAACGGGGAACATGC
CCGGTTTTGAGAGGTACAGAAGCAGCAGCATCAGCAGCAGCGGTCGTGCA
CGGTTTTATCTGGCTGATCCTTTGATATTTCCTTTCCGAGTGGTGTCACC
CGTAACGTTCCGAGCGGTTGGTTGCGCGTTCCGCCACTCTACTACCCTCT
CAAGGTGCGCAACGAGCTGACCTCCGCGGAGTTCGCGCTGAACCTTAACG
GGGCCGGCAGCGGCGGCGGC
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10366:3960..5079-

>mRNA_S-firma_F_contig10366.520.1 ID=mRNA_S-firma_F_contig10366.520.1|Name=mRNA_S-firma_F_contig10366.520.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1266bp|location=Sequence derived from alignment at S-firma_F_contig10366:3960..5079- (Sphaerotrichia firma ET2_F female)
ATGAAACAACCTCAACCTCAGGCGACCGCCCTGGACGGCGGCCTAGCCCG
GCGAACTCGCGCATCCGACGGTACCGCCGGCCGGAACCACGTCCCGTCCT
CGGGCCCCCCTTCTTCTTCCTCTTCCCGCCCGACCCGCCGAGTGAGGAGC
GACGTCGGTGTTCGCGGCCGCCGAAGCGGACTCTACAGCAGCGGCGGCGG
CGGCGGGTTGAGCGCCAGCGCAAGCACCGGGAACACAAACAGCATGACCG
CCGACGGCGTGGACAGCAGCCCCGGCGGCGTTGGCCCCGCGGCCGCCGGC
CAAATAACGGCGGGGGCCGCCGGCGCGGGAACAGGCGGGGTGGGGGTTGG
AGGCGGAGGGGAGCGGAGACCGTACCTCGCGGGGCGGAGTCGACCGGCCA
TGGCGCTCGGGCAAGCGACGCAGGAGCAGCAGGAAAAGGGGGCGACAGTG
GATGCGGGGGAGGGTGAGCCTGGTGGGGCGGCGGCGGCGGCGGTGGCGAA
CGCGGTGACTACCAGCAATCGGACGGAGAGAGGGCAGCGGCTTCGCGCGG
TGAACTGGGTCAAACAGATGAAACAACCTCAACCTCAGGCGACCGCCCTG
GACGGCGGCCTAGCCCGGCGAACTCGCGCATCCGACGGTACCGCCGGCCG
GAACCACGTCCCGTCCTCGGGCCCCCCTTCTTCTTCCTCTTCCCGCCCGA
CCCGCCGAGTGAGGAGCGACGTCGGTGTTCGCGGCCGCCGAAGCGGACTC
TACAGCAGCGGCGGCGGCGGCGGGTTGAGCGCCAGCGCAAGCACCGGGAA
CACAAACAGCATGACCGCCGACGGCGTGGACAGCAGCCCCGGCGGCGTTG
GCCCCGCGGCCGCCGGCCAAATAACGGCGGGGGCCGCCGGCGCGGGAACA
GGCGGGGTGGGGGTTGGAGGCGGAGGGGAGCGGAGACCGTACCTCGCGGG
GCGGAGTCGACCGGCCATGGCGCTCGGGCAAGCGACGCAGGAGCAGCAGG
AAAAGGGGGCGACAGTGGATGCGGGGGAGGGTGAGCCTGGTGGGGCGGCG
GCGGCGGCGGTGGCGAACGCGGTGACTACCAGCAATCGGACGGAGAGAGG
GCAGCGGCTTCGCGCGGTGAACTGGGTCAAACAGGTGCGCAACGAGCTGA
CCTCCGCGGAGTTCGCGCTGAACCTTAACGGGGCCGGCAGCGGCGGCGGC
GTGCGCAACGAGCTGACCTCCGCGGAGTTCGCGCTGAACCTTAACGGGGC
CGGCAGCGGCGGCGGC
back to top