mRNA_S-firma_F_contig1036.514.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1036.514.1
Unique NamemRNA_S-firma_F_contig1036.514.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1036.514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1036contigS-firma_F_contig1036:24175..24639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size467
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815567.5859137-CDS-S-firma_F_contig1036:24174..244861622815567.5859137-CDS-S-firma_F_contig1036:24174..24486Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1036 24175..24486 +
1696949421.456876-CDS-S-firma_F_contig1036:24174..244861696949421.456876-CDS-S-firma_F_contig1036:24174..24486Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1036 24175..24486 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815567.597582-UTR-S-firma_F_contig1036:24486..246391622815567.597582-UTR-S-firma_F_contig1036:24486..24639Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1036 24487..24639 +
1696949421.4766114-UTR-S-firma_F_contig1036:24486..246391696949421.4766114-UTR-S-firma_F_contig1036:24486..24639Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1036 24487..24639 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1036.514.1prot_S-firma_F_contig1036.514.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1036 24175..24486 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1036.514.1

>prot_S-firma_F_contig1036.514.1 ID=prot_S-firma_F_contig1036.514.1|Name=mRNA_S-firma_F_contig1036.514.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=104bp
PYHKCRTHSYVHPYETDRCLLASYHRKRIQLLWLCPVPARGAYVSPTNRG
ALSFSDKPSLSHLSRSLAGSPRLWLRYLSRQISKSRAGPCLTKTRRTPHP
EHT*
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mRNA from alignment at S-firma_F_contig1036:24175..24639+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1036.514.1 ID=mRNA_S-firma_F_contig1036.514.1|Name=mRNA_S-firma_F_contig1036.514.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=465bp|location=Sequence derived from alignment at S-firma_F_contig1036:24175..24639+ (Sphaerotrichia firma ET2_F female)
CCCTACCACAAGTGCCGAACGCACTCGTACGTACATCCATACGAGACGGA
CCGCTGTTTGTTAGCAAGTTACCACCGCAAGCGGATACAACTGCTGTGGT
TGTGTCCAGTGCCAGCACGGGGGGCGTACGTATCACCAACAAACAGAGGA
GCCTTGTCCTTCTCTGACAAGCCTTCGCTGAGCCATCTTTCGCGCTCACT
GGCCGGTTCTCCTCGCCTATGGCTCCGCTACCTTAGTCGACAAATCTCAA
AAAGTAGAGCGGGGCCTTGCCTAACAAAAACTCGCCGCACCCCGCACCCA
GAACATACATGAGGTGCCGGGGTACGGAGTATGGACAAAACACAAAACAC
AGAGAGAGATGCCCAGGTTCACTGGTGAAAATCATATAACTGATGACTGA
CCTGCACGGAGAAGTGCCATCGCATTTCCTTTTCCGGGAAACACAGAGGT
CGCAGCTCTTCTTGG
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Coding sequence (CDS) from alignment at S-firma_F_contig1036:24175..24639+

>mRNA_S-firma_F_contig1036.514.1 ID=mRNA_S-firma_F_contig1036.514.1|Name=mRNA_S-firma_F_contig1036.514.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=624bp|location=Sequence derived from alignment at S-firma_F_contig1036:24175..24639+ (Sphaerotrichia firma ET2_F female)
CCCTACCACAAGTGCCGAACGCACTCGTACGTACATCCATACGAGACGGA
CCGCTGTTTGTTAGCAAGTTACCACCGCAAGCGGATACAACTGCTGTGGT
TGTGTCCAGTGCCAGCACGGGGGGCGTACGTATCACCAACAAACAGAGGA
GCCTTGTCCTTCTCTGACAAGCCTTCGCTGAGCCATCTTTCGCGCTCACT
GGCCGGTTCTCCTCGCCTATGGCTCCGCTACCTTAGTCGACAAATCTCAA
AAAGTAGAGCGGGGCCTTGCCTAACAAAAACTCGCCGCACCCCGCACCCA
GAACATACATGACCCTACCACAAGTGCCGAACGCACTCGTACGTACATCC
ATACGAGACGGACCGCTGTTTGTTAGCAAGTTACCACCGCAAGCGGATAC
AACTGCTGTGGTTGTGTCCAGTGCCAGCACGGGGGGCGTACGTATCACCA
ACAAACAGAGGAGCCTTGTCCTTCTCTGACAAGCCTTCGCTGAGCCATCT
TTCGCGCTCACTGGCCGGTTCTCCTCGCCTATGGCTCCGCTACCTTAGTC
GACAAATCTCAAAAAGTAGAGCGGGGCCTTGCCTAACAAAAACTCGCCGC
ACCCCGCACCCAGAACATACATGA
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