mRNA_S-firma_F_contig10358.508.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10358.508.1
Unique NamemRNA_S-firma_F_contig10358.508.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10358.508.1 vs. uniprot
Match: A0A024URR9_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024URR9_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.710e-11
Identity = 48/156 (30.77%), Postives = 71/156 (45.51%), Query Frame = 1 
Query:   55 LARLFTDTDGYTCTVKALNLQGNDVGVAGCQALMSALRESRNTTLSYLNLNGNPIGKDGGLAVAELLQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRLFSRMEDTMYHIARMLRCNTGLVRLDLSKNRIGDFGAQLLGEYLAD 522
            +A+LF + DGYT  +  +NL GN +     + L +AL E  N T+  LNL  NP+G +GGL VA +L+                                        P L +  E+ + H+ +ML+ N  L  + L K++I D GAQ+L E L D
Sbjct:   74 IAKLFLNCDGYTSNLVNVNLAGNALNDECARILCTALAE--NKTIRVLNLRRNPLGNEGGLHVARMLEINSNLADLDIGDTDIGHGSLIAISGALRHNTALARINLDNPVLKTLEEEALQHVGKMLQVNATLTHVSLCKHQITDVGAQVLAERLLD 227
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BLAST of mRNA_S-firma_F_contig10358.508.1 vs. uniprot
Match: T0S9C6_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0S9C6_SAPDV)

HSP 1 Score: 68.9 bits (167), Expect = 1.840e-9
Identity = 44/151 (29.14%), Postives = 69/151 (45.70%), Query Frame = 1 
Query:   55 LARLF-TDTDGYTCTVKALNLQGNDVGVAGCQALMSALRESRNTTLSYLNLNGNPIGKDGGLAVAELLQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRLFSRMEDTMYHIARMLRCNTGLVRLDLSKNRIGDFGAQLL 504
            L++LF  + DGY C +  ++L GN++       L +ALR   N T+  LNL  NP+G +GG+ VAE+L+                                        P L +  E+ + H+ +ML+ N+ L  + L K+ I D GAQ+L
Sbjct:   76 LSKLFINNVDGYKCALVRVDLSGNELNSDCISILCTALRN--NKTIKSLNLRRNPMGNEGGMFVAEMLEGNTCLEALDIGDTDLGHGSLIAMATALSLNESISSINMDNPLLRTLEEEALQHLGKMLQTNSTLTHVSLCKHHISDIGAQVL 224
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BLAST of mRNA_S-firma_F_contig10358.508.1 vs. uniprot
Match: W4HCU8_9STRA (Uncharacterized protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HCU8_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 4.480e-9
Identity = 157/301 (52.16%), Postives = 193/301 (64.12%), Query Frame = 1 
Query:   55 LARLFTDTDGYTCTVKALNLQGNDVGVAGCQALMSALRESRNTTLSYLNLNGNPIGKDGGLAVAELLQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRLFS-----RMEDTMYHIARMLRCNTGLVRLDLSKNRIGDFGAQLLGEYLADNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNI--TLAVLRVWGNEWGTDSRDAFAGVVDSKAPASGLQVDVRPYIVDGRVSVAEQD 936
            +A+LF + DGYT ++  +NL GN +     + L +AL E  N T+  LNL  NP+G +G L VA +L+ XXXXXXXXXXXXXXXX                       P L +       E+ + H+A+ML+ N  L  + L K++I D GAQ+L E     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            N   TL  L VWGN++G  + + F  ++  + PA  L  DV+PYIVDG+V +A++D
Sbjct:   74 IAKLFLNIDGYTSSLVHVNLAGNALNDECARILCTALAE--NKTIQVLNLRRNPLGNEGNLHVARMLEIXXXXXXXXXXXXXXXXGSLIAISGALRHNTALKRINLDNPVLKTLEVVFEQEEALQHVAKMLQANHTLTHVSLCKHQITDVGAQVLAERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLARLANGVARNAHSTLCELVVWGNDFGDVAPEQFHHLLQ-RHPA--LHTDVQPYIVDGKVHIAQKD 369
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BLAST of mRNA_S-firma_F_contig10358.508.1 vs. uniprot
Match: B3S086_TRIAD (Uncharacterized protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3S086_TRIAD)

HSP 1 Score: 61.6 bits (148), Expect = 5.390e-7
Identity = 78/172 (45.35%), Postives = 101/172 (58.72%), Query Frame = 1 
Query:    1 VEGLFLCYNLITDAGAVNLARLFTDTDGYTCTVKALNLQGNDVGVAGCQALMSALRESRNTTLSYLNLNGNPIGKDGGLAVAELLQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRLFSRMEDTMYHIARMLRCNTGLVRLDLSKNRIGDFGAQLLGEYL 516
            V  L L YN I+D GA  + +L  +       ++ LNL   D+G AG + +   ++ +   TL+ L+L+GN +   G LA       XXXXXXXXXXXXXXXXXXXXXXXXXXX            P LFS+ E+T  HIA ML+ N+ L +L LSK+ I DFGA+ L E L
Sbjct:   97 VATLNLAYNNISDEGAKCIGKLLENHP-----LRLLNLSYCDIGPAGGEYIAKGIQMTE--TLTVLDLSGNKLKSKGVLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNNIVQILNIDRPLLFSQQEETTVHIANMLKVNSSLRKLHLSKHDIRDFGAERLVEAL 261
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10358.508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A024URR9_9STRA3.710e-1130.77Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
T0S9C6_SAPDV1.840e-929.14Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
W4HCU8_9STRA4.480e-952.16Uncharacterized protein n=9 Tax=Aphanomyces astaci... [more]
B3S086_TRIAD5.390e-745.35Uncharacterized protein n=2 Tax=Trichoplax TaxID=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10358contigS-firma_F_contig10358:522..1632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog7897.ENSLACP00000018029
Preferred nameLRRC34
PFAMsLRR_6
Max annot lvl33208|Metazoa
Evalue1.36e-13
EggNOG OGsKOG4308@1|root,KOG4308@2759|Eukaryota,38H8T@33154|Opisthokonta,3BB2P@33208|Metazoa,3D25Z@33213|Bilateria,486NG@7711|Chordata,497SR@7742|Vertebrata
DescriptionLeucine rich repeat containing 34
COG categoryS
Hectar predicted targeting categoryother localisation
Exons3
Model size954
Cds size954
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10358.508.1prot_S-firma_F_contig10358.508.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10358 522..1632 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815567.311661-CDS-S-firma_F_contig10358:521..9201622815567.311661-CDS-S-firma_F_contig10358:521..920Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10358 522..920 +
1696949421.2839696-CDS-S-firma_F_contig10358:521..9201696949421.2839696-CDS-S-firma_F_contig10358:521..920Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10358 522..920 +
1622815567.3247175-CDS-S-firma_F_contig10358:984..12921622815567.3247175-CDS-S-firma_F_contig10358:984..1292Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10358 985..1292 +
1696949421.2953126-CDS-S-firma_F_contig10358:984..12921696949421.2953126-CDS-S-firma_F_contig10358:984..1292Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10358 985..1292 +
1622815567.336958-CDS-S-firma_F_contig10358:1385..16321622815567.336958-CDS-S-firma_F_contig10358:1385..1632Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10358 1386..1632 +
1696949421.3046477-CDS-S-firma_F_contig10358:1385..16321696949421.3046477-CDS-S-firma_F_contig10358:1385..1632Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10358 1386..1632 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10358.508.1

>prot_S-firma_F_contig10358.508.1 ID=prot_S-firma_F_contig10358.508.1|Name=mRNA_S-firma_F_contig10358.508.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=318bp
VEGLFLCYNLITDAGAVNLARLFTDTDGYTCTVKALNLQGNDVGVAGCQA
LMSALRESRNTTLSYLNLNGNPIGKDGGLAVAELLQANTTLATLNLGNCE
LETGAMVALCTVLQTNTTVSDLSLANPRLFSRMEDTMYHIARMLRCNTGL
VRLDLSKNRIGDFGAQLLGEYLADNSTLLALDVSCNSIASVGGEALAALL
LRGSPLEDVNLQGNRICDDGAEAFGLALRRCASLRSLDVRNNSIGDRGLL
ALGTAFDDNITLAVLRVWGNEWGTDSRDAFAGVVDSKAPASGLQVDVRPY
IVDGRVSVAEQDVNLVV*
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mRNA from alignment at S-firma_F_contig10358:522..1632+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10358.508.1 ID=mRNA_S-firma_F_contig10358.508.1|Name=mRNA_S-firma_F_contig10358.508.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1111bp|location=Sequence derived from alignment at S-firma_F_contig10358:522..1632+ (Sphaerotrichia firma ET2_F female)
GTGGAAGGCTTGTTTCTGTGCTACAACCTCATCACCGACGCTGGTGCTGT
CAACCTTGCCCGCCTGTTCACCGACACGGACGGCTACACGTGCACCGTCA
AGGCCCTGAACTTGCAGGGCAATGACGTTGGTGTGGCGGGGTGCCAGGCC
CTCATGAGCGCCCTCCGGGAGTCTCGCAACACCACGCTGTCCTACCTGAA
CCTCAACGGGAACCCCATTGGGAAGGACGGCGGGCTTGCCGTCGCAGAGC
TGCTGCAAGCCAACACCACGCTGGCGACGTTGAACCTTGGCAACTGTGAG
CTGGAGACTGGGGCCATGGTGGCCCTGTGCACGGTTTTACAGACCAACAC
CACTGTGTCCGACCTGTCACTGGCGAACCCCCGCCTGTTTTCCCGCATGG
TGCGCGTGCGCGTGCGCGTGTGCGTTGCTGTGCCGGCTCCCCCTCACCCC
TATCCACCCGCAGGAGGACACCATGTACCACATTGCCCGCATGCTGCGGT
GCAACACCGGCCTGGTGCGCCTGGACCTCTCCAAGAACCGCATTGGGGAC
TTTGGGGCGCAGCTGCTTGGGGAGTACCTTGCCGACAACAGCACGCTGCT
TGCCCTGGACGTCAGCTGCAACAGCATTGCTAGTGTTGGCGGCGAGGCGC
TGGCGGCGCTGCTCCTGCGGGGATCCCCCCTGGAGGACGTTAACCTGCAG
GGGAACCGCATTTGCGACGACGGTGCGGAGGCATTTGGCCTGGCGTTGCG
GCGGTGTGCGTCCCTGCGGAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGGCGGTGGCAGTGTTTGCTGGACCGAGGTTTCACC
CCCATCCCCTCCAGCCTGGACGTCCGCAACAACTCCATCGGAGACCGGGG
CCTGCTGGCGTTGGGGACGGCGTTTGATGACAACATTACGCTGGCGGTGC
TGCGGGTGTGGGGAAACGAGTGGGGCACCGACAGCCGGGACGCCTTTGCC
GGCGTCGTGGACTCCAAGGCGCCTGCCTCGGGCCTCCAGGTTGACGTCAG
ACCGTACATCGTGGACGGCCGCGTCAGTGTGGCGGAGCAGGACGTGAACC
TGGTTGTATAA
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Coding sequence (CDS) from alignment at S-firma_F_contig10358:522..1632+

>mRNA_S-firma_F_contig10358.508.1 ID=mRNA_S-firma_F_contig10358.508.1|Name=mRNA_S-firma_F_contig10358.508.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1908bp|location=Sequence derived from alignment at S-firma_F_contig10358:522..1632+ (Sphaerotrichia firma ET2_F female)
GTGGAAGGCTTGTTTCTGTGCTACAACCTCATCACCGACGCTGGTGCTGT
CAACCTTGCCCGCCTGTTCACCGACACGGACGGCTACACGTGCACCGTCA
AGGCCCTGAACTTGCAGGGCAATGACGTTGGTGTGGCGGGGTGCCAGGCC
CTCATGAGCGCCCTCCGGGAGTCTCGCAACACCACGCTGTCCTACCTGAA
CCTCAACGGGAACCCCATTGGGAAGGACGGCGGGCTTGCCGTCGCAGAGC
TGCTGCAAGCCAACACCACGCTGGCGACGTTGAACCTTGGCAACTGTGAG
CTGGAGACTGGGGCCATGGTGGCCCTGTGCACGGTTTTACAGACCAACAC
CACTGTGTCCGACCTGTCACTGGCGAACCCCCGCCTGTTTTCCCGCATGG
TGGAAGGCTTGTTTCTGTGCTACAACCTCATCACCGACGCTGGTGCTGTC
AACCTTGCCCGCCTGTTCACCGACACGGACGGCTACACGTGCACCGTCAA
GGCCCTGAACTTGCAGGGCAATGACGTTGGTGTGGCGGGGTGCCAGGCCC
TCATGAGCGCCCTCCGGGAGTCTCGCAACACCACGCTGTCCTACCTGAAC
CTCAACGGGAACCCCATTGGGAAGGACGGCGGGCTTGCCGTCGCAGAGCT
GCTGCAAGCCAACACCACGCTGGCGACGTTGAACCTTGGCAACTGTGAGC
TGGAGACTGGGGCCATGGTGGCCCTGTGCACGGTTTTACAGACCAACACC
ACTGTGTCCGACCTGTCACTGGCGAACCCCCGCCTGTTTTCCCGCATGGA
GGACACCATGTACCACATTGCCCGCATGCTGCGGTGCAACACCGGCCTGG
TGCGCCTGGACCTCTCCAAGAACCGCATTGGGGACTTTGGGGCGCAGCTG
CTTGGGGAGTACCTTGCCGACAACAGCACGCTGCTTGCCCTGGACGTCAG
CTGCAACAGCATTGCTAGTGTTGGCGGCGAGGCGCTGGCGGCGCTGCTCC
TGCGGGGATCCCCCCTGGAGGACGTTAACCTGCAGGGGAACCGCATTTGC
GACGACGGTGCGGAGGCATTTGGCCTGGCGTTGCGGCGGTGTGCGTCCCT
GCGGAGGAGGACACCATGTACCACATTGCCCGCATGCTGCGGTGCAACAC
CGGCCTGGTGCGCCTGGACCTCTCCAAGAACCGCATTGGGGACTTTGGGG
CGCAGCTGCTTGGGGAGTACCTTGCCGACAACAGCACGCTGCTTGCCCTG
GACGTCAGCTGCAACAGCATTGCTAGTGTTGGCGGCGAGGCGCTGGCGGC
GCTGCTCCTGCGGGGATCCCCCCTGGAGGACGTTAACCTGCAGGGGAACC
GCATTTGCGACGACGGTGCGGAGGCATTTGGCCTGGCGTTGCGGCGGTGT
GCGTCCCTGCGGAGCCTGGACGTCCGCAACAACTCCATCGGAGACCGGGG
CCTGCTGGCGTTGGGGACGGCGTTTGATGACAACATTACGCTGGCGGTGC
TGCGGGTGTGGGGAAACGAGTGGGGCACCGACAGCCGGGACGCCTTTGCC
GGCGTCGTGGACTCCAAGGCGCCTGCCTCGGGCCTCCAGGTTGACGTCAG
ACCGTACATCGTGGACGGCCGCGTCAGTGTGGCGGAGCAGGACGTGAACC
TGGTTGTATAACCTGGACGTCCGCAACAACTCCATCGGAGACCGGGGCCT
GCTGGCGTTGGGGACGGCGTTTGATGACAACATTACGCTGGCGGTGCTGC
GGGTGTGGGGAAACGAGTGGGGCACCGACAGCCGGGACGCCTTTGCCGGC
GTCGTGGACTCCAAGGCGCCTGCCTCGGGCCTCCAGGTTGACGTCAGACC
GTACATCGTGGACGGCCGCGTCAGTGTGGCGGAGCAGGACGTGAACCTGG
TTGTATAA
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