mRNA_S-firma_F_contig10351.502.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10351.502.1
Unique NamemRNA_S-firma_F_contig10351.502.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10351.502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10351contigS-firma_F_contig10351:4743..5090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size350
Cds size348
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.8612351-CDS-S-firma_F_contig10351:4742..50901622815566.8612351-CDS-S-firma_F_contig10351:4742..5090Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10351 4743..5090 +
1696949420.986065-CDS-S-firma_F_contig10351:4742..50901696949420.986065-CDS-S-firma_F_contig10351:4742..5090Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10351 4743..5090 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10351.502.1prot_S-firma_F_contig10351.502.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10351 4743..5090 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10351.502.1

>prot_S-firma_F_contig10351.502.1 ID=prot_S-firma_F_contig10351.502.1|Name=mRNA_S-firma_F_contig10351.502.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=116bp
MPCVLYPFGLASQRPSNKDPRFLVLLFLVLMVLRCCGDRLVLDAVLSPVL
SPALYHLPPCLCRFSVYCVPKEQLLVAHQIYTEKQAESGLYSRIHMHGNS
AIVLRITFFAFIFVRL
back to top

mRNA from alignment at S-firma_F_contig10351:4743..5090+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10351.502.1 ID=mRNA_S-firma_F_contig10351.502.1|Name=mRNA_S-firma_F_contig10351.502.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=348bp|location=Sequence derived from alignment at S-firma_F_contig10351:4743..5090+ (Sphaerotrichia firma ET2_F female)
ATGCCGTGTGTACTGTACCCCTTTGGTCTTGCTTCCCAGCGTCCATCCAA
CAAGGATCCGAGGTTTTTGGTGTTGCTGTTCTTGGTCTTGATGGTGCTGC
GTTGTTGTGGCGATCGCCTCGTCCTTGACGCTGTTTTGTCGCCCGTGCTC
TCACCAGCTCTCTACCATTTACCTCCGTGTTTGTGTCGTTTCTCGGTGTA
CTGTGTTCCAAAAGAACAGCTACTAGTAGCGCACCAAATTTACACAGAAA
AACAAGCAGAAAGTGGGTTATATTCTCGCATCCACATGCATGGCAACTCT
GCAATTGTGCTACGTATAACGTTCTTTGCTTTCATTTTTGTTCGGCTC
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10351:4743..5090+

>mRNA_S-firma_F_contig10351.502.1 ID=mRNA_S-firma_F_contig10351.502.1|Name=mRNA_S-firma_F_contig10351.502.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=696bp|location=Sequence derived from alignment at S-firma_F_contig10351:4743..5090+ (Sphaerotrichia firma ET2_F female)
ATGCCGTGTGTACTGTACCCCTTTGGTCTTGCTTCCCAGCGTCCATCCAA
CAAGGATCCGAGGTTTTTGGTGTTGCTGTTCTTGGTCTTGATGGTGCTGC
GTTGTTGTGGCGATCGCCTCGTCCTTGACGCTGTTTTGTCGCCCGTGCTC
TCACCAGCTCTCTACCATTTACCTCCGTGTTTGTGTCGTTTCTCGGTGTA
CTGTGTTCCAAAAGAACAGCTACTAGTAGCGCACCAAATTTACACAGAAA
AACAAGCAGAAAGTGGGTTATATTCTCGCATCCACATGCATGGCAACTCT
GCAATTGTGCTACGTATAACGTTCTTTGCTTTCATTTTTGTTCGGCTCAT
GCCGTGTGTACTGTACCCCTTTGGTCTTGCTTCCCAGCGTCCATCCAACA
AGGATCCGAGGTTTTTGGTGTTGCTGTTCTTGGTCTTGATGGTGCTGCGT
TGTTGTGGCGATCGCCTCGTCCTTGACGCTGTTTTGTCGCCCGTGCTCTC
ACCAGCTCTCTACCATTTACCTCCGTGTTTGTGTCGTTTCTCGGTGTACT
GTGTTCCAAAAGAACAGCTACTAGTAGCGCACCAAATTTACACAGAAAAA
CAAGCAGAAAGTGGGTTATATTCTCGCATCCACATGCATGGCAACTCTGC
AATTGTGCTACGTATAACGTTCTTTGCTTTCATTTTTGTTCGGCTC
back to top