prot_S-firma_M_contig995.20931.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig995.20931.1
Unique Nameprot_S-firma_M_contig995.20931.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length288
Homology
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BLAST of mRNA_S-firma_M_contig995.20931.1 vs. uniprot
Match: D8LQK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQK7_ECTSI)

HSP 1 Score: 283 bits (724), Expect = 8.740e-88
Identity = 169/288 (58.68%), Postives = 200/288 (69.44%), Query Frame = 0 
Query:    1 MEITFITDVESTGAMKAALALDTFSNVTHGFAALLIGNCFEDVIVTTVNVSQKSRPLYRRVPNLDLSSTAYSDHIEEPAEIVPSAMDLRTGGASSSLWIVTFMLITVLSTLACVCVGLKCIHAGRGAQGTASAYANYHAEDQRDNRATRVDGSVLDTPEQTPAYNKENRMFSPRGGAAEGRPRMSAKAKRAALNARSAPNYRGKGTGSTQDFEVLSSASDASSTE---ETEEPMENPMFSSPPGSGGGRGHVPRLSALDFGKTIDEDIGDNSEVASEFWRRRNRGTDD 285
            MEI F+TDVESTGAMKAA ALD+FSNVTHGFAALLIG CFEDVI++TVN+SQ+S P  RRVP  D SST+Y DHIE+P EIVPSA+DL    +   +WIV F+LITVL+T  C  +G+KCI  G  A G   A+A+   +D +D RA  VDGSV D P  +PAY+K N   S R    E   R SAK KR A NAR+ P     G  S +D EVLSSAS+ SST    + E   ENP+F+SP  S     HVPRLS LDFG+T+DEDIG +S+VASEFWRR NRG DD
Sbjct:  353 MEIKFVTDVESTGAMKAAAALDSFSNVTHGFAALLIGECFEDVIISTVNISQRSNPFDRRVPRTDPSSTSYKDHIEDPLEIVPSALDLTMRRSDPYMWIVIFVLITVLATSVCAIIGVKCIDGGYFAAG---AHADDDLKDGQDGRAVGVDGSVPDAPGSSPAYSKNNGKSSRR----ESGRRTSAKKKREARNARNVPGLGASGK-SMEDIEVLSSASELSSTGGALDKELHAENPLFASPMASKSR--HVPRLSGLDFGETVDEDIGGDSDVASEFWRRSNRGGDD 630
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig995.20931.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQK7_ECTSI8.740e-8858.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 96..118
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..95
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 119..287
NoneNo IPR availableTMHMMTMhelixcoord: 96..118

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig995contigS-firma_M_contig995:4795..5937 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig995.20931.1mRNA_S-firma_M_contig995.20931.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig995 4576..6645 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig995.20931.1 ID=prot_S-firma_M_contig995.20931.1|Name=mRNA_S-firma_M_contig995.20931.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=288bp
MEITFITDVESTGAMKAALALDTFSNVTHGFAALLIGNCFEDVIVTTVNV
SQKSRPLYRRVPNLDLSSTAYSDHIEEPAEIVPSAMDLRTGGASSSLWIV
TFMLITVLSTLACVCVGLKCIHAGRGAQGTASAYANYHAEDQRDNRATRV
DGSVLDTPEQTPAYNKENRMFSPRGGAAEGRPRMSAKAKRAALNARSAPN
YRGKGTGSTQDFEVLSSASDASSTEETEEPMENPMFSSPPGSGGGRGHVP
RLSALDFGKTIDEDIGDNSEVASEFWRRRNRGTDDAS*
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