prot_S-firma_M_contig99.20881.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-firma_M_contig99.20881.1
Unique Name	prot_S-firma_M_contig99.20881.1
Type	polypeptide
Organism	Sphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length	229

Homology

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BLAST of mRNA_S-firma_M_contig99.20881.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE)

HSP 1 Score: 290 bits (742), Expect = 9.370e-97
Identity = 151/224 (67.41%), Postives = 174/224 (77.68%), Query Frame = 0

Query:    7 VALTSVASACAFVAPSAFNGAVVSHETKASSSLSMVAKKGPVSSGGNFESAIGAQPPLGFYDPAGLLTNADQERFDRLRYVEIKHGRISMLAVAGHLVQQNFRLPGMLSTSADLSFADMPNGLAAISKLPTLGLFQIIAFIGFLELGVMKQKEGSFPGDMTLSGEPYA--WTKFSDEVKEQKRAIELNNGRAAQMGILGLMMHEAVDNHPYIINDLLSLPYTFN 228
            +AL   ASA AFVAPSAFNGA V+   K+SS++ M           +FES IGAQPPLGF+DP GLL +ADQERF+RLRYVE+KHGRI+MLA+AGHL QQN RLPGMLS SA+LSFADMPNG+AA+SK+P  GL QI AF+GFLEL VMK  EGSFPGD T  G P+A  W   S+E +E KRAIELNNGRAAQMGIL LM+HE ++N PYIINDLL   YTFN
Sbjct:    6 MALACAASANAFVAPSAFNGAAVATPAKSSSAMKM-----------SFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLGASYTFN 218

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BLAST of mRNA_S-firma_M_contig99.20881.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY)

HSP 1 Score: 277 bits (708), Expect = 1.340e-91
Identity = 144/228 (63.16%), Postives = 171/228 (75.00%), Query Frame = 0

Query:    3 MELAVALTSVASACAFVAPSAFNGAVVSHETKASSSLSMVAKKGPVSSGGNFESAIGAQPPLGFYDPAGLLTNADQERFDRLRYVEIKHGRISMLAVAGHLVQQNFRLPGMLSTSADLSFADMPNGLAAISKLPTLGLFQIIAFIGFLELGVMKQKEGSFPGDMTLSGEPY--AWTKFSDEVKEQKRAIELNNGRAAQMGILGLMMHEAVDNHPYIINDLLSLPYTFN 228
            M+ AV   + A+A  F  PSAFNGA ++   KA S++ M           +FES IGAQ PLGF+DP GLL +ADQERF+RLRYVE+KHGRI+MLA+AGHL QQN RLPGMLS SA+LSFADMPNG+AA+SK+P  GL QI AFIGFLEL VMK  EGSFPGD TL G P+  +W   S+E +  KRAIELNNGRAAQMGIL LM+HE ++N PY+INDL+   YTFN
Sbjct:    1 MKSAVMAVACAAAPGFRGPSAFNGAALTTSAKACSAMKM-----------SFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGASWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVGASYTFN 217

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BLAST of mRNA_S-firma_M_contig99.20881.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE)

HSP 1 Score: 275 bits (704), Expect = 6.220e-91
Identity = 140/209 (66.99%), Postives = 162/209 (77.51%), Query Frame = 0

Query:   22 SAFNGAVVSHETKASSSLSMVAKKGPVSSGGNFESAIGAQPPLGFYDPAGLLTNADQERFDRLRYVEIKHGRISMLAVAGHLVQQNFRLPGMLSTSADLSFADMPNGLAAISKLPTLGLFQIIAFIGFLELGVMKQKEGSFPGDMTLSGEPYA--WTKFSDEVKEQKRAIELNNGRAAQMGILGLMMHEAVDNHPYIINDLLSLPYTFN 228
            SAFNGA V+   K+SS++ M           +FES IGAQPPLGF+DP GLL +ADQERF+RLRYVE+KHGRI+MLA+AGHL QQN RLPGMLS SADLSFADMPNG+AA+SK+P  GL QI AF+GFLEL VMK  EGSFPGD T  G P+A  W   S+E +  KRAIELNNGRAAQMGIL LM+HE ++N PY+INDLL   YTFN
Sbjct:   24 SAFNGAAVATSAKSSSAMKM-----------SFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 221

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BLAST of mRNA_S-firma_M_contig99.20881.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY)

HSP 1 Score: 270 bits (689), Expect = 8.460e-89
Identity = 138/210 (65.71%), Postives = 159/210 (75.71%), Query Frame = 0

Query:   21 PSAFNGAVVSHETKASSSLSMVAKKGPVSSGGNFESAIGAQPPLGFYDPAGLLTNADQERFDRLRYVEIKHGRISMLAVAGHLVQQNFRLPGMLSTSADLSFADMPNGLAAISKLPTLGLFQIIAFIGFLELGVMKQKEGSFPGDMTLSGEPYA--WTKFSDEVKEQKRAIELNNGRAAQMGILGLMMHEAVDNHPYIINDLLSLPYTFN 228
            PSAFNGA +S   K+SS++ M           +FES IGAQ PLGF+DP GLL +ADQERF+RLRYVE+KHGRI+MLA+AGHL QQN RLPGMLS SA+LSFADMPNG+AA+SK+P  GL QI  FIGFLEL VMK  EGSFPGD  + G P+A  W   S E +  KRAIELNNGRAAQMGILG+M+HE + N PYI NDLL   YTFN
Sbjct:   13 PSAFNGAALSTPAKSSSAMKM-----------SFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFIIGGNPFASSWDSMSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLGASYTFN 211

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BLAST of mRNA_S-firma_M_contig99.20881.1 vs. uniprot
Match: D8LNK6_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK6_ECTSI)

HSP 1 Score: 273 bits (698), Expect = 7.780e-88
Identity = 139/208 (66.83%), Postives = 162/208 (77.88%), Query Frame = 0

Query:   23 AFNGAVVSHETKASSSLSMVAKKGPVSSGGNFESAIGAQPPLGFYDPAGLLTNADQERFDRLRYVEIKHGRISMLAVAGHLVQQNFRLPGMLSTSADLSFADMPNGLAAISKLPTLGLFQIIAFIGFLELGVMKQKEGSFPGDMTLSGEPY--AWTKFSDEVKEQKRAIELNNGRAAQMGILGLMMHEAVDNHPYIINDLLSLPYTFN 228
            AFNGA V+   K+SS++ M           +FES IGAQPPLGF+DP GLL +ADQERF+RLRYVE+KHGRI+MLA+AGHL QQN RLPGMLS SA+LSFADMPNG+AA+SK+P  GL QI AFIGFLEL VMK  EGSFPGD TL G P+  +W   S+E +  KRAIELNNGRAAQMGIL LM+HE ++N PY+INDLL   YTFN
Sbjct:  181 AFNGAAVATPAKSSSAMKM-----------SFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 377

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BLAST of mRNA_S-firma_M_contig99.20881.1 vs. uniprot
Match: A0A6H5JDS8_9PHAE (LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS8_9PHAE)

HSP 1 Score: 263 bits (672), Expect = 1.180e-86
Identity = 128/178 (71.91%), Postives = 147/178 (82.58%), Query Frame = 0

Query:   53 NFESAIGAQPPLGFYDPAGLLTNADQERFDRLRYVEIKHGRISMLAVAGHLVQQNFRLPGMLSTSADLSFADMPNGLAAISKLPTLGLFQIIAFIGFLELGVMKQKEGSFPGDMTLSGEPY--AWTKFSDEVKEQKRAIELNNGRAAQMGILGLMMHEAVDNHPYIINDLLSLPYTFN 228
            +FES IGAQPPLGF+DP GLL +ADQERF+RLRYVE+KHGRI+MLA+AGHL QQN RLPGMLS SA+LSFADMPNG+AA+SK+P  GL QI AFIGFLEL VMK  EGSFPGD TL G P+  +W   S+E +  KRAIELNNGRAAQMGIL LM+HE ++N PY+INDLL   Y FN
Sbjct:    4 SFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYNFN 181

[Close]

BLAST of mRNA_S-firma_M_contig99.20881.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY)

HSP 1 Score: 261 bits (667), Expect = 2.210e-85
Identity = 140/224 (62.50%), Postives = 166/224 (74.11%), Query Frame = 0

Query:    8 ALTSVASACAFV-APSAFNGAVVSHETKASSSLSMVAKKGPVSSGGNFESAIGAQPPLGFYDPAGLLTNADQERFDRLRYVEIKHGRISMLAVAGHLVQQNFRLPGMLSTSADLSFADMPNGLAAISKLPTLGLFQIIAFIGFLELGVMKQKEGSFPGDMTLSGEPYA--WTKFSDEVKEQKRAIELNNGRAAQMGILGLMMHEAVDNHPYIINDLLSLPYTFN 228
            A+ +VASA   +  PSAFNGA ++   K+SS++ M           +FES IGAQ PLGF+DP GLL +ADQ+ F+RLRYVE+K GRI+MLA+AGHL QQN RLPGMLS SA+LSFADMPNG+AA+SK+P  GL QI  FIGFLEL VMK  EGSFPGD TL G P+A  W   S E +  KRAIELNNGRAAQMGIL LM+HE ++N PY+INDLL   Y FN
Sbjct:    4 AIMAVASAAPGLRGPSAFNGAALTTSAKSSSAMKM-----------SFESEIGAQAPLGFWDPLGLLEDADQDAFERLRYVEVKLGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 216

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BLAST of mRNA_S-firma_M_contig99.20881.1 vs. uniprot
Match: FCPD_MACPY (Fucoxanthin-chlorophyll a-c binding protein D, chloroplastic (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=FCPD_MACPY)

HSP 1 Score: 259 bits (662), Expect = 4.030e-85
Identity = 127/178 (71.35%), Postives = 145/178 (81.46%), Query Frame = 0

Query:   53 NFESAIGAQPPLGFYDPAGLLTNADQERFDRLRYVEIKHGRISMLAVAGHLVQQNFRLPGMLSTSADLSFADMPNGLAAISKLPTLGLFQIIAFIGFLELGVMKQKEGSFPGDMTLSGEPYA--WTKFSDEVKEQKRAIELNNGRAAQMGILGLMMHEAVDNHPYIINDLLSLPYTFN 228
            +FE  IGAQ PLGF+DP GLL +ADQERF+RLRYVE+KHGRI+MLA+AGHL QQN RLPGMLS SA+LSFADMPNG+AA+SK+P  GL QI  FIGFLEL VMK  EGSFPGD TL G P+A  W   S+E +E KRAIELNNGRAAQMGIL LM+HE ++N PY+INDLL   Y FN
Sbjct:    5 SFELEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 182

[Close]

BLAST of mRNA_S-firma_M_contig99.20881.1 vs. uniprot
Match: A0A6H5KBS3_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS3_9PHAE)

HSP 1 Score: 256 bits (654), Expect = 1.490e-83
Identity = 131/203 (64.53%), Postives = 148/203 (72.91%), Query Frame = 0

Query:   53 NFESAIGAQPPLGFYDPAGLLTNA-------------------------DQERFDRLRYVEIKHGRISMLAVAGHLVQQNFRLPGMLSTSADLSFADMPNGLAAISKLPTLGLFQIIAFIGFLELGVMKQKEGSFPGDMTLSGEPYA--WTKFSDEVKEQKRAIELNNGRAAQMGILGLMMHEAVDNHPYIINDLLSLPYTFN 228
            +FES +GAQPPLGF+DP GLL +                          DQERFDRLRYVE+KHGRISMLAVAGHLV QN+R PG LS  A L+FADMPNG+AAISK+P LGL QI+AFIGFLEL VMK  EGSFPGDMT+ G P+A  W   S+E K  KRAIELNNGRAAQMGIL +M+HE + N PYIINDLL+ PYTFN
Sbjct:    4 SFESELGAQPPLGFFDPLGLLIDQVVPQLPPSCQSSLLVICADGLEPWEDQERFDRLRYVEVKHGRISMLAVAGHLVAQNYRFPGYLSYDAKLTFADMPNGVAAISKIPPLGLAQIVAFIGFLELNVMKNVEGSFPGDMTIGGNPFAAQWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 206

[Close]

BLAST of mRNA_S-firma_M_contig99.20881.1 vs. uniprot
Match: D7FIR0_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIR0_ECTSI)

HSP 1 Score: 250 bits (638), Expect = 6.850e-81
Identity = 138/234 (58.97%), Postives = 168/234 (71.79%), Query Frame = 0

Query:    3 MELAVALTSVASACA-----FVAPSAFNGAVVSHETKASSSLSMVAKKGPVSSGGNFESAIGAQPPLGFYDPAGLLT-NADQERFDRLRYVEIKHGRISMLAVAGHLVQQNFRLPGMLSTSADLSFADMPNGLAAISKLPTLGLFQIIAFIGFLELGVMKQKEGSFPGDMTLSGEPYA--WTKFSDEVKEQKRAIELNNGRAAQMGILGLMMHEAVDNHPYIINDLLSLPYTFN 228
            M+ A A+ +  +ACA     FVAPSAF GA ++    ASSS+ M           +FE+ IGAQ P+G++DP GLLT +  QERFDRLRYVEIKHGRI+MLA+ GH+  QNFR PGML+ SADLSFAD PNGLAAISK+P  GL QI  FIGFLE  VM QKEGSFPGDM+L   P+   W  +++E +  KRAIELNNGRAAQMGILGLM+HE ++N PY+IN++L     FN
Sbjct:    1 MKTACAMAAGVAACAATASAFVAPSAFKGASLTAAKPASSSMKM-----------SFETEIGAQAPIGYWDPLGLLTKDPSQERFDRLRYVEIKHGRIAMLAILGHITAQNFRFPGMLAPSADLSFADCPNGLAAISKIPLYGLIQIFLFIGFLETKVMLQKEGSFPGDMSLIN-PFEKEWESWTEEEQATKRAIELNNGRAAQMGILGLMVHEQINNTPYVINEILGSHVQFN 222

The following BLAST results are available for this feature:

BLAST of mRNA_S-firma_M_contig99.20881.1 vs. uniprot

BLAST of mRNA_S-firma_M_contig99.20881.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KCX6_9PHAE	9.370e-97	67.41	LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepI...	[more]
FCPB_MACPY	1.340e-91	63.16	Fucoxanthin-chlorophyll a-c binding protein B, chl...	[more]
A0A6H5JHT6_9PHAE	6.220e-91	66.99	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
FCPF_MACPY	8.460e-89	65.71	Fucoxanthin-chlorophyll a-c binding protein F, chl...	[more]
D8LNK6_ECTSI	7.780e-88	66.83	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A6H5JDS8_9PHAE	1.180e-86	71.91	LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
FCPC_MACPY	2.210e-85	62.50	Fucoxanthin-chlorophyll a-c binding protein C, chl...	[more]
FCPD_MACPY	4.030e-85	71.35	Fucoxanthin-chlorophyll a-c binding protein D, chl...	[more]
A0A6H5KBS3_9PHAE	1.490e-83	64.53	LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
D7FIR0_ECTSI	6.850e-81	58.97	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 55..224 e-value: 4.8E-25 score: 90.4
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 59..208 e-value: 2.5E-31 score: 109.4
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 13..212
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 19..26
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..4
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 27..228
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 5..18
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..26
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..16 score: 5.0
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..17 score: 0.548
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 53..221
None	No IPR available	TMHMM	TMhelix		coord: 7..29
None	No IPR available	TMHMM	TMhelix		coord: 128..150
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 13..212

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-firma_M_contig99	contig	S-firma_M_contig99:8606..11140 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male	2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90	2022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-firma_M_contig99.20881.1	mRNA_S-firma_M_contig99.20881.1	Sphaerotrichia firma Sfir_13m male	mRNA	S-firma_M_contig99 6936..11195 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-firma_M_contig99.20881.1 ID=prot_S-firma_M_contig99.20881.1|Name=mRNA_S-firma_M_contig99.20881.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=229bp
MKMELAVALTSVASACAFVAPSAFNGAVVSHETKASSSLSMVAKKGPVSS
GGNFESAIGAQPPLGFYDPAGLLTNADQERFDRLRYVEIKHGRISMLAVA
GHLVQQNFRLPGMLSTSADLSFADMPNGLAAISKLPTLGLFQIIAFIGFL
ELGVMKQKEGSFPGDMTLSGEPYAWTKFSDEVKEQKRAIELNNGRAAQMG
ILGLMMHEAVDNHPYIINDLLSLPYTFN*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001344	Chloro_AB-bd_pln
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf