mRNA_S-firma_M_contig99.20881.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig99.20881.1
Unique NamemRNA_S-firma_M_contig99.20881.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
[Close]
BLAST of mRNA_S-firma_M_contig99.20881.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE)

HSP 1 Score: 291 bits (744), Expect = 9.990e-90
Identity = 151/224 (67.41%), Postives = 174/224 (77.68%), Query Frame = 2 
Query:   74 VALTSVASACAFVAPSAFNGAVVSHETKASSSLSMVAKKGPVSSGGNFESAIGAQPPLGFYDPAGLLTNADQERFDRLRYVEIKHGRISMLAVAGHLVQQNFRLPGMLSTSADLSFADMPNGLAAISKLPTLGLFQIIAFIGFLELGVMKQKEGSFPGDMTLSGEPYA--WTKFSDEVKEQKRAIELNNGRAAQMGILGLMMHEAVDNHPYIINDLLSLPYTFN 739
            +AL   ASA AFVAPSAFNGA V+   K+SS++ M           +FES IGAQPPLGF+DP GLL +ADQERF+RLRYVE+KHGRI+MLA+AGHL QQN RLPGMLS SA+LSFADMPNG+AA+SK+P  GL QI AF+GFLEL VMK  EGSFPGD T  G P+A  W   S+E +E KRAIELNNGRAAQMGIL LM+HE ++N PYIINDLL   YTFN
Sbjct:    6 MALACAASANAFVAPSAFNGAAVATPAKSSSAMKM-----------SFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLGASYTFN 218
[Close]
BLAST of mRNA_S-firma_M_contig99.20881.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY)

HSP 1 Score: 278 bits (710), Expect = 9.470e-85
Identity = 144/228 (63.16%), Postives = 171/228 (75.00%), Query Frame = 2 
Query:   62 MELAVALTSVASACAFVAPSAFNGAVVSHETKASSSLSMVAKKGPVSSGGNFESAIGAQPPLGFYDPAGLLTNADQERFDRLRYVEIKHGRISMLAVAGHLVQQNFRLPGMLSTSADLSFADMPNGLAAISKLPTLGLFQIIAFIGFLELGVMKQKEGSFPGDMTLSGEPY--AWTKFSDEVKEQKRAIELNNGRAAQMGILGLMMHEAVDNHPYIINDLLSLPYTFN 739
            M+ AV   + A+A  F  PSAFNGA ++   KA S++ M           +FES IGAQ PLGF+DP GLL +ADQERF+RLRYVE+KHGRI+MLA+AGHL QQN RLPGMLS SA+LSFADMPNG+AA+SK+P  GL QI AFIGFLEL VMK  EGSFPGD TL G P+  +W   S+E +  KRAIELNNGRAAQMGIL LM+HE ++N PY+INDL+   YTFN
Sbjct:    1 MKSAVMAVACAAAPGFRGPSAFNGAALTTSAKACSAMKM-----------SFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGASWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVGASYTFN 217
[Close]
BLAST of mRNA_S-firma_M_contig99.20881.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE)

HSP 1 Score: 276 bits (705), Expect = 5.860e-84
Identity = 140/209 (66.99%), Postives = 162/209 (77.51%), Query Frame = 2 
Query:  119 SAFNGAVVSHETKASSSLSMVAKKGPVSSGGNFESAIGAQPPLGFYDPAGLLTNADQERFDRLRYVEIKHGRISMLAVAGHLVQQNFRLPGMLSTSADLSFADMPNGLAAISKLPTLGLFQIIAFIGFLELGVMKQKEGSFPGDMTLSGEPYA--WTKFSDEVKEQKRAIELNNGRAAQMGILGLMMHEAVDNHPYIINDLLSLPYTFN 739
            SAFNGA V+   K+SS++ M           +FES IGAQPPLGF+DP GLL +ADQERF+RLRYVE+KHGRI+MLA+AGHL QQN RLPGMLS SADLSFADMPNG+AA+SK+P  GL QI AF+GFLEL VMK  EGSFPGD T  G P+A  W   S+E +  KRAIELNNGRAAQMGIL LM+HE ++N PY+INDLL   YTFN
Sbjct:   24 SAFNGAAVATSAKSSSAMKM-----------SFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 221
[Close]
BLAST of mRNA_S-firma_M_contig99.20881.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY)

HSP 1 Score: 270 bits (690), Expect = 6.540e-82
Identity = 138/210 (65.71%), Postives = 159/210 (75.71%), Query Frame = 2 
Query:  116 PSAFNGAVVSHETKASSSLSMVAKKGPVSSGGNFESAIGAQPPLGFYDPAGLLTNADQERFDRLRYVEIKHGRISMLAVAGHLVQQNFRLPGMLSTSADLSFADMPNGLAAISKLPTLGLFQIIAFIGFLELGVMKQKEGSFPGDMTLSGEPYA--WTKFSDEVKEQKRAIELNNGRAAQMGILGLMMHEAVDNHPYIINDLLSLPYTFN 739
            PSAFNGA +S   K+SS++ M           +FES IGAQ PLGF+DP GLL +ADQERF+RLRYVE+KHGRI+MLA+AGHL QQN RLPGMLS SA+LSFADMPNG+AA+SK+P  GL QI  FIGFLEL VMK  EGSFPGD  + G P+A  W   S E +  KRAIELNNGRAAQMGILG+M+HE + N PYI NDLL   YTFN
Sbjct:   13 PSAFNGAALSTPAKSSSAMKM-----------SFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFIIGGNPFASSWDSMSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLGASYTFN 211
[Close]
BLAST of mRNA_S-firma_M_contig99.20881.1 vs. uniprot
Match: D8LNK6_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK6_ECTSI)

HSP 1 Score: 273 bits (699), Expect = 6.810e-81
Identity = 139/208 (66.83%), Postives = 162/208 (77.88%), Query Frame = 2 
Query:  122 AFNGAVVSHETKASSSLSMVAKKGPVSSGGNFESAIGAQPPLGFYDPAGLLTNADQERFDRLRYVEIKHGRISMLAVAGHLVQQNFRLPGMLSTSADLSFADMPNGLAAISKLPTLGLFQIIAFIGFLELGVMKQKEGSFPGDMTLSGEPY--AWTKFSDEVKEQKRAIELNNGRAAQMGILGLMMHEAVDNHPYIINDLLSLPYTFN 739
            AFNGA V+   K+SS++ M           +FES IGAQPPLGF+DP GLL +ADQERF+RLRYVE+KHGRI+MLA+AGHL QQN RLPGMLS SA+LSFADMPNG+AA+SK+P  GL QI AFIGFLEL VMK  EGSFPGD TL G P+  +W   S+E +  KRAIELNNGRAAQMGIL LM+HE ++N PY+INDLL   YTFN
Sbjct:  181 AFNGAAVATPAKSSSAMKM-----------SFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 377
[Close]
BLAST of mRNA_S-firma_M_contig99.20881.1 vs. uniprot
Match: A0A6H5JDS8_9PHAE (LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS8_9PHAE)

HSP 1 Score: 263 bits (673), Expect = 7.200e-80
Identity = 128/178 (71.91%), Postives = 147/178 (82.58%), Query Frame = 2 
Query:  212 NFESAIGAQPPLGFYDPAGLLTNADQERFDRLRYVEIKHGRISMLAVAGHLVQQNFRLPGMLSTSADLSFADMPNGLAAISKLPTLGLFQIIAFIGFLELGVMKQKEGSFPGDMTLSGEPY--AWTKFSDEVKEQKRAIELNNGRAAQMGILGLMMHEAVDNHPYIINDLLSLPYTFN 739
            +FES IGAQPPLGF+DP GLL +ADQERF+RLRYVE+KHGRI+MLA+AGHL QQN RLPGMLS SA+LSFADMPNG+AA+SK+P  GL QI AFIGFLEL VMK  EGSFPGD TL G P+  +W   S+E +  KRAIELNNGRAAQMGIL LM+HE ++N PY+INDLL   Y FN
Sbjct:    4 SFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYNFN 181
[Close]
BLAST of mRNA_S-firma_M_contig99.20881.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY)

HSP 1 Score: 262 bits (669), Expect = 9.010e-79
Identity = 140/224 (62.50%), Postives = 166/224 (74.11%), Query Frame = 2 
Query:   77 ALTSVASACAFV-APSAFNGAVVSHETKASSSLSMVAKKGPVSSGGNFESAIGAQPPLGFYDPAGLLTNADQERFDRLRYVEIKHGRISMLAVAGHLVQQNFRLPGMLSTSADLSFADMPNGLAAISKLPTLGLFQIIAFIGFLELGVMKQKEGSFPGDMTLSGEPYA--WTKFSDEVKEQKRAIELNNGRAAQMGILGLMMHEAVDNHPYIINDLLSLPYTFN 739
            A+ +VASA   +  PSAFNGA ++   K+SS++ M           +FES IGAQ PLGF+DP GLL +ADQ+ F+RLRYVE+K GRI+MLA+AGHL QQN RLPGMLS SA+LSFADMPNG+AA+SK+P  GL QI  FIGFLEL VMK  EGSFPGD TL G P+A  W   S E +  KRAIELNNGRAAQMGIL LM+HE ++N PY+INDLL   Y FN
Sbjct:    4 AIMAVASAAPGLRGPSAFNGAALTTSAKSSSAMKM-----------SFESEIGAQAPLGFWDPLGLLEDADQDAFERLRYVEVKLGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 216
[Close]
BLAST of mRNA_S-firma_M_contig99.20881.1 vs. uniprot
Match: FCPD_MACPY (Fucoxanthin-chlorophyll a-c binding protein D, chloroplastic (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=FCPD_MACPY)

HSP 1 Score: 259 bits (663), Expect = 2.140e-78
Identity = 127/178 (71.35%), Postives = 145/178 (81.46%), Query Frame = 2 
Query:  212 NFESAIGAQPPLGFYDPAGLLTNADQERFDRLRYVEIKHGRISMLAVAGHLVQQNFRLPGMLSTSADLSFADMPNGLAAISKLPTLGLFQIIAFIGFLELGVMKQKEGSFPGDMTLSGEPYA--WTKFSDEVKEQKRAIELNNGRAAQMGILGLMMHEAVDNHPYIINDLLSLPYTFN 739
            +FE  IGAQ PLGF+DP GLL +ADQERF+RLRYVE+KHGRI+MLA+AGHL QQN RLPGMLS SA+LSFADMPNG+AA+SK+P  GL QI  FIGFLEL VMK  EGSFPGD TL G P+A  W   S+E +E KRAIELNNGRAAQMGIL LM+HE ++N PY+INDLL   Y FN
Sbjct:    5 SFELEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 182
[Close]
BLAST of mRNA_S-firma_M_contig99.20881.1 vs. uniprot
Match: A0A6H5KBS3_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS3_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 7.050e-77
Identity = 131/203 (64.53%), Postives = 148/203 (72.91%), Query Frame = 2 
Query:  212 NFESAIGAQPPLGFYDPAGLLTNA-------------------------DQERFDRLRYVEIKHGRISMLAVAGHLVQQNFRLPGMLSTSADLSFADMPNGLAAISKLPTLGLFQIIAFIGFLELGVMKQKEGSFPGDMTLSGEPYA--WTKFSDEVKEQKRAIELNNGRAAQMGILGLMMHEAVDNHPYIINDLLSLPYTFN 739
            +FES +GAQPPLGF+DP GLL +                          DQERFDRLRYVE+KHGRISMLAVAGHLV QN+R PG LS  A L+FADMPNG+AAISK+P LGL QI+AFIGFLEL VMK  EGSFPGDMT+ G P+A  W   S+E K  KRAIELNNGRAAQMGIL +M+HE + N PYIINDLL+ PYTFN
Sbjct:    4 SFESELGAQPPLGFFDPLGLLIDQVVPQLPPSCQSSLLVICADGLEPWEDQERFDRLRYVEVKHGRISMLAVAGHLVAQNYRFPGYLSYDAKLTFADMPNGVAAISKIPPLGLAQIVAFIGFLELNVMKNVEGSFPGDMTIGGNPFAAQWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 206
[Close]
BLAST of mRNA_S-firma_M_contig99.20881.1 vs. uniprot
Match: D7FIR0_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIR0_ECTSI)

HSP 1 Score: 251 bits (640), Expect = 1.820e-74
Identity = 138/234 (58.97%), Postives = 168/234 (71.79%), Query Frame = 2 
Query:   62 MELAVALTSVASACA-----FVAPSAFNGAVVSHETKASSSLSMVAKKGPVSSGGNFESAIGAQPPLGFYDPAGLLT-NADQERFDRLRYVEIKHGRISMLAVAGHLVQQNFRLPGMLSTSADLSFADMPNGLAAISKLPTLGLFQIIAFIGFLELGVMKQKEGSFPGDMTLSGEPYA--WTKFSDEVKEQKRAIELNNGRAAQMGILGLMMHEAVDNHPYIINDLLSLPYTFN 739
            M+ A A+ +  +ACA     FVAPSAF GA ++    ASSS+ M           +FE+ IGAQ P+G++DP GLLT +  QERFDRLRYVEIKHGRI+MLA+ GH+  QNFR PGML+ SADLSFAD PNGLAAISK+P  GL QI  FIGFLE  VM QKEGSFPGDM+L   P+   W  +++E +  KRAIELNNGRAAQMGILGLM+HE ++N PY+IN++L     FN
Sbjct:    1 MKTACAMAAGVAACAATASAFVAPSAFKGASLTAAKPASSSMKM-----------SFETEIGAQAPIGYWDPLGLLTKDPSQERFDRLRYVEIKHGRIAMLAILGHITAQNFRFPGMLAPSADLSFADCPNGLAAISKIPLYGLIQIFLFIGFLETKVMLQKEGSFPGDMSLIN-PFEKEWESWTEEEQATKRAIELNNGRAAQMGILGLMVHEQINNTPYVINEILGSHVQFN 222
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig99.20881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCX6_9PHAE9.990e-9067.41LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepI... [more]
FCPB_MACPY9.470e-8563.16Fucoxanthin-chlorophyll a-c binding protein B, chl... [more]
A0A6H5JHT6_9PHAE5.860e-8466.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
FCPF_MACPY6.540e-8265.71Fucoxanthin-chlorophyll a-c binding protein F, chl... [more]
D8LNK6_ECTSI6.810e-8166.83Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5JDS8_9PHAE7.200e-8071.91LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
FCPC_MACPY9.010e-7962.50Fucoxanthin-chlorophyll a-c binding protein C, chl... [more]
FCPD_MACPY2.140e-7871.35Fucoxanthin-chlorophyll a-c binding protein D, chl... [more]
A0A6H5KBS3_9PHAE7.050e-7764.53LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FIR0_ECTSI1.820e-7458.97Light harvesting complex protein n=2 Tax=Ectocarpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig99contigS-firma_M_contig99:6936..11195 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score288.5
Seed ortholog evalue2.7e-75
Seed eggNOG ortholog2880.D7FWY4
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2CDPH@1,2S3EU@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorychloroplast
Exons4
Model size2412
Cds size687
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig99.20881.1prot_S-firma_M_contig99.20881.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig99 8606..11140 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828829.3528461-UTR-S-firma_M_contig99:6935..86051622828829.3528461-UTR-S-firma_M_contig99:6935..8605Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig99 6936..8605 -
1697105187.9648533-UTR-S-firma_M_contig99:6935..86051697105187.9648533-UTR-S-firma_M_contig99:6935..8605Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig99 6936..8605 -
1622828829.418013-UTR-S-firma_M_contig99:11140..111951622828829.418013-UTR-S-firma_M_contig99:11140..11195Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig99 11141..11195 -
1697105188.0170128-UTR-S-firma_M_contig99:11140..111951697105188.0170128-UTR-S-firma_M_contig99:11140..11195Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig99 11141..11195 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828829.366237-CDS-S-firma_M_contig99:8605..86321622828829.366237-CDS-S-firma_M_contig99:8605..8632Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig99 8606..8632 -
1697105187.976437-CDS-S-firma_M_contig99:8605..86321697105187.976437-CDS-S-firma_M_contig99:8605..8632Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig99 8606..8632 -
1622828829.379431-CDS-S-firma_M_contig99:8983..90821622828829.379431-CDS-S-firma_M_contig99:8983..9082Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig99 8984..9082 -
1697105187.9904778-CDS-S-firma_M_contig99:8983..90821697105187.9904778-CDS-S-firma_M_contig99:8983..9082Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig99 8984..9082 -
1622828829.3925934-CDS-S-firma_M_contig99:9510..98321622828829.3925934-CDS-S-firma_M_contig99:9510..9832Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig99 9511..9832 -
1697105187.9993825-CDS-S-firma_M_contig99:9510..98321697105187.9993825-CDS-S-firma_M_contig99:9510..9832Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig99 9511..9832 -
1622828829.4053898-CDS-S-firma_M_contig99:10901..111401622828829.4053898-CDS-S-firma_M_contig99:10901..11140Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig99 10902..11140 -
1697105188.0082247-CDS-S-firma_M_contig99:10901..111401697105188.0082247-CDS-S-firma_M_contig99:10901..11140Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig99 10902..11140 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig99.20881.1

>prot_S-firma_M_contig99.20881.1 ID=prot_S-firma_M_contig99.20881.1|Name=mRNA_S-firma_M_contig99.20881.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=229bp
MKMELAVALTSVASACAFVAPSAFNGAVVSHETKASSSLSMVAKKGPVSS
GGNFESAIGAQPPLGFYDPAGLLTNADQERFDRLRYVEIKHGRISMLAVA
GHLVQQNFRLPGMLSTSADLSFADMPNGLAAISKLPTLGLFQIIAFIGFL
ELGVMKQKEGSFPGDMTLSGEPYAWTKFSDEVKEQKRAIELNNGRAAQMG
ILGLMMHEAVDNHPYIINDLLSLPYTFN*
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mRNA from alignment at S-firma_M_contig99:6936..11195-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig99.20881.1 ID=mRNA_S-firma_M_contig99.20881.1|Name=mRNA_S-firma_M_contig99.20881.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=4260bp|location=Sequence derived from alignment at S-firma_M_contig99:6936..11195- (Sphaerotrichia firma Sfir_13m male)
CGCATACACGACCCACACCTTTCGAAAGACTGACAGAGAGAGGAAATAAA
GCATCATGAAGATGGAGTTGGCTGTCGCGTTGACCTCTGTGGCTTCGGCC
TGTGCGTTCGTCGCCCCCTCCGCCTTCAATGGCGCGGTAGTTTCACACGA
GACGAAGGCCTCCTCTTCTCTCAGCATGGTGGCGAAGAAGGGCCCGGTCT
CTTCCGGTGGCAACTTCGAGTCTGCTATCGGTGCCCAGCCCCCTCTCGGC
TTTTACGACCCGGCCGGTCTCTTGACGAACGCCGACCAGGAACGGTGAGA
TATGGCCGTATGTGTCCGGCATGCCCGCTTCTTTTGTCAAGTCACAGCAG
TAGGCAACATGCGTATGTGTGTCTTCTGTGGTCCAGAAACATGAGCTACT
GTAGTGTAGCACCGATGTCACGATGTTGCTCTCTTTGGTATACTCGTACG
GATTGGTTCGCGAATGTGACGGCATTGCGTAGTCGCTGAGTGCATCGATG
GATCAGGAAAGACCACCTCACAGCGATATAGGATCCTTTGTGGTTCACCC
CGTTCCCAGGAAATACAAAAAGCCAACATGACTCAGCGGCACCGCAGCTT
GTACCGTAAAAGTCGTGCTCAGCAAGTCAGAGGGCATCTGTTGGATGTGT
GTGTCGATGTGTACGTAGATAGTTTACCAGTGTCGTGTCAAGTAGTGTTT
GTTTGTGAGATACTTGGCGAACGGAAATATACAGCTCCTTCGCTTGTCTC
CCAAAGGATTTACCAGTAGTCCATTTGTTTCTACATACATCGGCATCGGC
ACCCCAACGGTTCGACTATTTAGATGTTGCGATGTCTTCGGTGCTATCAT
ATGTATCATACGTGCATACCTGCATGCATATTCGGATACGTTTTTCTCAC
AGTTAATTTCAGTGAAGCTCTCGTGATTCCATGTGCCAACGCTCTTTTTC
TCTGATTGCGTGAAGAATTCGTCGCGGGGGAGTGGCGTGCTTATATCCCC
CGCTATTCGATGCATGTTGCAGTTTGGGGGTACGTAGTTGCACGCAGCAC
AGTTATAGAGAGTTCGGAGCGCTGTTGAGGGCGAGTCGGGGGCGCGCGCG
CGGGGGGGGGGATGTTGTCAGCAGCGGTGCGTTTGTTCGAGATATTGAAG
CGTGAATGGATATCCTCGGCTTTCATCGCCCGCTTATTATTCTCTAGTGT
TTTGTGTCTGGAGGGCGTCACGGCACGGAACCCAGCCGCGTACTATTTTC
CCCATCAGCGTCGCCCTGTCGATGCCTTGTTGATTTTCGATTCCTGATGG
CCTTTAGCCCATGCCGAGCTTTTGGCATCTGAAAACTTTTTTTTGTGCCC
CACGTTCGTCCAGGTTCGACCGCCTCCGGTACGTGGAGATCAAGCACGGA
CGCATCTCGATGCTTGCCGTCGCTGGCCACCTGGTCCAGCAGAACTTCCG
CCTGCCTGGCATGCTCTCGACCTCCGCCGACCTCTCGTTCGCCGACATGC
CGAACGGCCTGGCTGCGATTTCGAAGCTCCCCACTCTCGGGCTCTTCCAG
ATCATCGCCTTCATCGGCTTCCTCGAGCTCGGCGTGATGAAGCAGAAGGA
GGGCTCCTTCCCGGGCGACATGACGTTGAGTGGCGAACCGTACGCCTGGA
CTAAGTTCAGCGACGAAGTGAAGGAGCAGAAGAGGGTGAGTCGAAGGCAT
GCGGCATGCCCTTGCAGTTTGAATCGTGTGATATGATCATTGGCCTCGAC
CCGGGTGGGGAGAGGTCCAGCCAGCTACGAAAGCCTGTTGATCGATGCCC
TCGGGGCTCGCTGACCTATCCAAACAGACCATAGGTGTTGACTTTCGCGG
TCGTTGGTTGGAGGTGATATAACCCCGTCATCGTGGCTGCAGGTAGACCA
CTATTATGGCAACGCGTTGCAAGAAAACCAACCCGGATCCCTTGTCTGTG
GCCTCGTTTTTTTTGTCCCCGGCGCCTCACGTCTTGTTGTGGGACGTACA
TTGCCTCGACTGATAGATGGCTATTGTTTGCTCTCTGTTGGTTGCCTCTG
TTGATGGAAGGCATAGTCTAATCGTTCGTCGGCATCCTTTCTGTTGTGCT
TTTGGACGGCCAGGCGATCGAGCTCAACAACGGCCGCGCGGCGCAGATGG
GCATCTTGGGCCTCATGATGCACGAGGCAGTCGACAACCACCCCTACATC
ATCAACGATTTGGTAAGAAATAGTTGACCGTGTGAAGACTACTGGTGGGT
GCGACGTCGATCATCTGTCGCTCTGCCTGATCTTCACCTGCTCGTGCTGT
GATTCGCCAGGGTTTACTTCGTGGTAAATTTACAGAACGCCTACTAGGAA
AAGGGTAGAGTGATGCCCTGAGCTGTCGGTGCGGTTTGATCCGCCGAAAG
AACGACAGCCCTTGGCTGCCGTCTACTGTACTGTCTAAAAACGTGGTGCT
CGTATGTAAGAACCATCAGTTTAATCGGCTTGTTTATTTCGCTGTGTTTC
GCGCGTCCTCCTCACAAACCACACACCACTCTGCTCTGTCCCGTCTATTC
GCTATTCGCACAGCTGAGCCTCCCGTACACGTTCAACTAAGGATAGCCTG
GGCTGTTCGGCGACGCTATCTTGCTCTTGATACCGGGGCGAGAAGGGTTG
CCGAGGTTTTGGGGGAGAGGTAGCGTTGCACCGTGCTTTTTTTAGACGAG
AGACGGTGCACAATTTAAGCCAGAGGCTACCAGGAGCTGCTGGGGCGACT
GCTGGTGGGCATGATGGCGACCACGCGACATGTGGTAGTGGTGGTGCCGC
TACATGCATCTCATAGTGGACCTTTCGGAGAGAGTTATTCGCGTTTGTCA
CTTTTCATTGCTGGCACGCAAGCATTCCGAGTCTGCAGAGCTCTGAGCAT
GCTGTTGCAATGTTTTTGTGATTTTGTTGGCGCTTCAAGTGTCGTTCATG
GGCGATAGGTTACTGCCCTGGAGTTGGAGGTGTGAAGTGTGTTTTTGTCG
TTCGATGAGGCACACAAAAAACGGGGGGCTTGTGTTGACATGTTATATTG
GAAGCTTTTTTTTTTGCATCAACGGTGAACCAATCGACTCATGATTGTTA
TATCCAAACAGACGAATCCTTGCAAGGCGGCGATTCTCTCCGCTCGAGTT
CCTCTGATTGGGGGTTTTGAAGTTGGCGTTTCCTGTATGTAGTGGTGAGA
GCATTCAACCAACCGCGTTCTCATGGTGTATTCGGATATATAGTGGAAAT
GGCACCAACTCTCTGAAATACCTCCACGGTCTGCCACGTGCTTTCCGCAC
TCTCTACAACTCATCGTTAAGGCGCAGCCCCAGCCTCGTCTTAATCCCAT
CTCTGTTTTCCCTTGCGTTGACACAAGAGACGGTAGAGAGGAAGGCTCCT
TCACCATGCAGTTGGAAGTCAAGGGGATCAGAGGACACTAAACACATGTA
GGAGAGCGAGATACAATCGCGCGCCTCCGCACATCAACATATGGAGTACT
GCCACGTGTTTTCGGCACGCTCCTTCAAAACACACCTTTGCGTCGGGTTT
CACAAGAATTTCGCTTGACAACACTTACACCAAGGGAGATCGTTGGCTAG
ATGCACCCTATATCCACCACGCCACGGTGCATGACAAACACGTCGGGTGC
GTACACTCCACGCCACTTCCTTTTACGGAGAAAAACATAGAAACCACCAC
ATGAAGGAAAATTATTTCGTCCGATAATCGTCAACATATATGGCACCCAT
GAAACGCTAAGTTACTGACTGATGACACGAACCTAGAGCCAACGACATGG
CGCCAAAAAAATCCTACGGAACGTTCAGCAACCGGCCGCCGCGATGTTGA
GATCCGTCCTCGTTGCTGCTCACGCACCCATCGAAAGTCACCGTCACTGG
CTGCAGGTCGGTGTGCGTGGATTTGCCCAGTGGACCAACCTTACAATACA
GCACACGCCAGGCAGGGGGGGCAATCGATTTGGACAGTTCAAGTTTGCCG
ACACAGATGCAACACAAAACATTGGAAATACAGCAGTTCAGTTTTGCCCG
TTATGCGGATAAGAGAACGAACGCAAGCGATAGACCTTTCCTCCCCGGGT
ATCATCCTCGCAAGCTGTGAGAGCTTCTCATGCCCAATACCCAAAATCTG
ATGCTGGAATGCGTCCAAGTTGTTTACGGCCGACACTGCCGTCTTTCACA
TTTCAAAACTAATTTACCAGCTCGACCGAAAAAAGCTCGTTTGGGTCCAC
TCGACTCACC
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Coding sequence (CDS) from alignment at S-firma_M_contig99:6936..11195-

>mRNA_S-firma_M_contig99.20881.1 ID=mRNA_S-firma_M_contig99.20881.1|Name=mRNA_S-firma_M_contig99.20881.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1374bp|location=Sequence derived from alignment at S-firma_M_contig99:6936..11195- (Sphaerotrichia firma Sfir_13m male)
ATGAAGATGGAGTTGGCTGTCGCGTTGACCTCTGTGGCTTCGGCCTGTGC
GTTCGTCGCCCCCTCCGCCTTCAATGGCGCGGTAGTTTCACACGAGACGA
AGGCCTCCTCTTCTCTCAGCATGGTGGCGAAGAAGGGCCCGGTCTCTTCC
GGTGGCAACTTCGAGTCTGCTATCGGTGCCCAGCCCCCTCTCGGCTTTTA
CGACCCGGCCGGTCTCTTGACGAACGCCGACCAGGAACGATGAAGATGGA
GTTGGCTGTCGCGTTGACCTCTGTGGCTTCGGCCTGTGCGTTCGTCGCCC
CCTCCGCCTTCAATGGCGCGGTAGTTTCACACGAGACGAAGGCCTCCTCT
TCTCTCAGCATGGTGGCGAAGAAGGGCCCGGTCTCTTCCGGTGGCAACTT
CGAGTCTGCTATCGGTGCCCAGCCCCCTCTCGGCTTTTACGACCCGGCCG
GTCTCTTGACGAACGCCGACCAGGAACGGTTCGACCGCCTCCGGTACGTG
GAGATCAAGCACGGACGCATCTCGATGCTTGCCGTCGCTGGCCACCTGGT
CCAGCAGAACTTCCGCCTGCCTGGCATGCTCTCGACCTCCGCCGACCTCT
CGTTCGCCGACATGCCGAACGGCCTGGCTGCGATTTCGAAGCTCCCCACT
CTCGGGCTCTTCCAGATCATCGCCTTCATCGGCTTCCTCGAGCTCGGCGT
GATGAAGCAGAAGGAGGGCTCCTTCCCGGGCGACATGACGTTGAGTGGCG
AACCGTACGCCTGGACTAAGTTCAGCGACGAAGTGAAGGAGCAGAAGAGG
GTTCGACCGCCTCCGGTACGTGGAGATCAAGCACGGACGCATCTCGATGC
TTGCCGTCGCTGGCCACCTGGTCCAGCAGAACTTCCGCCTGCCTGGCATG
CTCTCGACCTCCGCCGACCTCTCGTTCGCCGACATGCCGAACGGCCTGGC
TGCGATTTCGAAGCTCCCCACTCTCGGGCTCTTCCAGATCATCGCCTTCA
TCGGCTTCCTCGAGCTCGGCGTGATGAAGCAGAAGGAGGGCTCCTTCCCG
GGCGACATGACGTTGAGTGGCGAACCGTACGCCTGGACTAAGTTCAGCGA
CGAAGTGAAGGAGCAGAAGAGGGCGATCGAGCTCAACAACGGCCGCGCGG
CGCAGATGGGCATCTTGGGCCTCATGATGCACGAGGCAGTCGACAACCAC
CCCTACATCATCAACGATTTGGCGATCGAGCTCAACAACGGCCGCGCGGC
GCAGATGGGCATCTTGGGCCTCATGATGCACGAGGCAGTCGACAACCACC
CCTACATCATCAACGATTTGCTGAGCCTCCCGTACACGTTCAACTAACTG
AGCCTCCCGTACACGTTCAACTAA
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