prot_S-firma_M_contig9565.20557.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig9565.20557.1
Unique Nameprot_S-firma_M_contig9565.20557.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length226
Homology
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BLAST of mRNA_S-firma_M_contig9565.20557.1 vs. uniprot
Match: D7G9B0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B0_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 3.940e-8
Identity = 47/142 (33.10%), Postives = 74/142 (52.11%), Query Frame = 0 
Query:   19 TELTDCADIAREELFFAAKQLTVRGKIDCSGERRGRLIGFAQDTVVISDEPLTTTDVRWVLLKGVRVTVIAPSVAIQRTETWRTVPVVKGRGSLEFQVSDHLPAPPGSSLVDEFDLISNAEEGPIELSANGAIHYTPRSIFV 160
            T +  CADI           LT+   I C+  +   + G   DTV+ S   L T  V  V+  G RVT+ AP+V +Q+TET R  PV++ +GS+EF+V++ +P     +L D   ++S   +G +   +  AI YT  ++ V
Sbjct:   56 TWIRTCADIPAAATLTGGT-LTLLRDIHCATLKTIHITG---DTVIRSHSALNTMGVGLVVHSGARVTIRAPTVLMQKTETMRGQPVLRVQGSVEFEVTNWVPEHLEGTLADNHGIVSCEGQGLVR--SKMAILYTSSAVIV 191
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9565.20557.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G9B0_ECTSI3.940e-833.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 14..226
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 10..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..9
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..13
score: 0.747

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9565contigS-firma_M_contig9565:799..3487 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9565.20557.1mRNA_S-firma_M_contig9565.20557.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig9565 799..3487 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig9565.20557.1 ID=prot_S-firma_M_contig9565.20557.1|Name=mRNA_S-firma_M_contig9565.20557.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=226bp
MAWLLACLSPCAAAGMLFTELTDCADIAREELFFAAKQLTVRGKIDCSGE
RRGRLIGFAQDTVVISDEPLTTTDVRWVLLKGVRVTVIAPSVAIQRTETW
RTVPVVKGRGSLEFQVSDHLPAPPGSSLVDEFDLISNAEEGPIELSANGA
IHYTPRSIFVSARAPSADGPLRNELTAAASAGAPSSAADADRGTGETTDG
QPGATNSDSTPSLAPAPAPASTPAGD
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