mRNA_S-firma_M_contig9565.20557.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9565.20557.1
Unique NamemRNA_S-firma_M_contig9565.20557.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
[Close]
BLAST of mRNA_S-firma_M_contig9565.20557.1 vs. uniprot
Match: D7G9B0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B0_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 3.940e-8
Identity = 47/142 (33.10%), Postives = 74/142 (52.11%), Query Frame = 1 
Query:   55 TELTDCADIAREELFFAAKQLTVRGKIDCSGERRGRLIGFAQDTVVISDEPLTTTDVRWVLLKGVRVTVIAPSVAIQRTETWRTVPVVKGRGSLEFQVSDHLPAPPGSSLVDEFDLISNAEEGPIELSANGAIHYTPRSIFV 480
            T +  CADI           LT+   I C+  +   + G   DTV+ S   L T  V  V+  G RVT+ AP+V +Q+TET R  PV++ +GS+EF+V++ +P     +L D   ++S   +G +   +  AI YT  ++ V
Sbjct:   56 TWIRTCADIPAAATLTGGT-LTLLRDIHCATLKTIHITG---DTVIRSHSALNTMGVGLVVHSGARVTIRAPTVLMQKTETMRGQPVLRVQGSVEFEVTNWVPEHLEGTLADNHGIVSCEGQGLVR--SKMAILYTSSAVIV 191
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9565.20557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G9B0_ECTSI3.940e-833.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9565contigS-firma_M_contig9565:799..3487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons5
Model size678
Cds size678
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9565.20557.1prot_S-firma_M_contig9565.20557.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9565 799..3487 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828791.6135526-CDS-S-firma_M_contig9565:798..9601622828791.6135526-CDS-S-firma_M_contig9565:798..960Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9565 799..960 +
1697105165.0092866-CDS-S-firma_M_contig9565:798..9601697105165.0092866-CDS-S-firma_M_contig9565:798..960Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9565 799..960 +
1622828791.6286342-CDS-S-firma_M_contig9565:1680..18121622828791.6286342-CDS-S-firma_M_contig9565:1680..1812Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9565 1681..1812 +
1697105165.0202475-CDS-S-firma_M_contig9565:1680..18121697105165.0202475-CDS-S-firma_M_contig9565:1680..1812Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9565 1681..1812 +
1622828791.6430113-CDS-S-firma_M_contig9565:2450..25401622828791.6430113-CDS-S-firma_M_contig9565:2450..2540Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9565 2451..2540 +
1697105165.0301533-CDS-S-firma_M_contig9565:2450..25401697105165.0301533-CDS-S-firma_M_contig9565:2450..2540Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9565 2451..2540 +
1622828791.66147-CDS-S-firma_M_contig9565:2856..29641622828791.66147-CDS-S-firma_M_contig9565:2856..2964Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9565 2857..2964 +
1697105165.0508175-CDS-S-firma_M_contig9565:2856..29641697105165.0508175-CDS-S-firma_M_contig9565:2856..2964Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9565 2857..2964 +
1622828791.6759462-CDS-S-firma_M_contig9565:3301..34871622828791.6759462-CDS-S-firma_M_contig9565:3301..3487Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9565 3302..3487 +
1697105165.0604837-CDS-S-firma_M_contig9565:3301..34871697105165.0604837-CDS-S-firma_M_contig9565:3301..3487Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9565 3302..3487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9565.20557.1

>prot_S-firma_M_contig9565.20557.1 ID=prot_S-firma_M_contig9565.20557.1|Name=mRNA_S-firma_M_contig9565.20557.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=226bp
MAWLLACLSPCAAAGMLFTELTDCADIAREELFFAAKQLTVRGKIDCSGE
RRGRLIGFAQDTVVISDEPLTTTDVRWVLLKGVRVTVIAPSVAIQRTETW
RTVPVVKGRGSLEFQVSDHLPAPPGSSLVDEFDLISNAEEGPIELSANGA
IHYTPRSIFVSARAPSADGPLRNELTAAASAGAPSSAADADRGTGETTDG
QPGATNSDSTPSLAPAPAPASTPAGD
back to top

mRNA from alignment at S-firma_M_contig9565:799..3487+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9565.20557.1 ID=mRNA_S-firma_M_contig9565.20557.1|Name=mRNA_S-firma_M_contig9565.20557.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=2689bp|location=Sequence derived from alignment at S-firma_M_contig9565:799..3487+ (Sphaerotrichia firma Sfir_13m male)
ATGGCATGGCTCCTGGCTTGTCTCTCCCCCTGCGCCGCTGCCGGTATGCT
CTTTACCGAGCTCACGGACTGCGCAGACATTGCGCGGGAGGAGCTCTTTT
TCGCGGCCAAGCAGCTCACTGTCCGTGGGAAAATTGACTGCAGCGGCGAG
CGACGTGGAAGGGTGAGCGCCGATGAGAATCATGCAGGGTTAGGTACAAC
GACGCTTCGTGCCATCGACGGCTTGCTTCTCCCGAGAGATAGACTCCGGC
CGTGTGTTAGACTCCGACTGTGTGTTCTGAACCAAAGTAGGCAGGATTGC
CCGTCTAGACTAACCTACTGCAACAACGCGTGCAGTCTATCCTTTCTTTG
CCGGAAAGCACGACCAACAAGACCTTGCCTCTGTGTGATGTGATGGCGGC
GAGTCACACACACCGCCCACAGGGAAAAGCCCCATGCGGCCTTCTCTTTT
TTTAATGGCGCGGGCTAACTCAGAAGGGGGGGGGGCGTAGACCGAGTTGG
ATGTCGATAAAAACAACTCCCGCCCCTTCCCCGCCATGAGAGTCGAGAAA
AAACGAGCAGCGACAAAATCGAGTATGTATGTACACTCCGGGGTATTGGG
GGGGGAACGTAACGTCCGTCTTGTGGAGGCGCCACAGCTTACACGCGATG
AAACACCTACCTCGGGTGCGATTTCAGAAGCGAAAAGAGGGGTGTCAGCT
GGACAGTGATGTACATATGTATGAGGGATATACACAGCCGTCACATAGCC
GTCATCAACACAGTGGTAGCTGCTGTTGCTGTTGGTGCTGCTGCTGCTGC
TTGGCTCGCCCTACAATAGGGTTGGTTCGTTTATTATATTTTCGGAAACC
GACATCATACCTCGCGCTTGCCACCTCGACAGCTCATCGGGTTCGCCCAA
GACACCGTGGTCATCTCCGACGAACCCCTTACCACCACCGACGTGCGGTG
GGTTCTGTTGAAGGGGGTGCGCGTTACCGTCATTGCTCCGTCAGTCGCCA
TCCAACGCACCGAGGTAAAATAAACACGGAACGAGGGTTACATAGAGCAA
GTAGGCGCGTTGACCAATTGTGTGCCGAGTTTTGTTCGCAAGAACATATA
GGTCCAACCCCCCCCTCCTGTGTGACCCCGGGTGGGTCGTCTAGCTAGTC
GAACTGGAGGATGGGGGCCAGTGGGGCAGACGACAGAAAACACTTATGGG
AGGAGAAAACAAGGGAAAAAAAAAACTCTGCCGGCCGGGCGGCGAGCAGT
CTATGTATCTTTTACGTAAGACAATCCCGAGCTGAATTTAAGTTTGGAGT
CGTCGGAGCTGGTAATCACCCAAAAGTGATGCCACCGCAATCTGCCGTGA
ATGGTAACCAGTTTTCTGTGTTGGTGAGCGATTTCCCCCGATTTTTTCAT
GAGAAAGCACGGTATATTTGGGCTGCCGTAATTTTATTCGCGGGGGGGGA
CCCGAAGCAGACGAACAGCGATCATACATCTCTGTCGTGTGAAGCTGCCG
TGCACCTAAACTGTTGCTCCGAGCGCACGCACATTTTGTGTGCCGTGCCT
GCTATCGTAACAGGAAATAAATGCAGCAACCTTGTTGATATCTTTGACCG
TACGAATTGCTGTCTCTTCTCCCCGGTGCCATCAATCATGCCTCCGGTTC
AGACATGGCGCACTGTTCCCGTGGTGAAGGGACGCGGATCCTTGGAGTTT
CAGGTCAGCGACCACCTCCCCGCGCCCCCCGGAAGCTCTCTGGTGAGTCG
ACTTCCCACCATCCCCTCACGTGGATTCAGAGGAACCAGCATGGCGCTGA
TTGATCTCGGCGGTGCCCCCAAAACAGGAGATATAGCAGGAGATACTGTA
GAAACGGCGCCTTGTCTCGATAGAGGCCCGCGATCAACAGCCAAGCAACA
TCAGGAAGGCAACGTTTGAACACGTCGCTGCCCGCCCTGCTACCATGATG
AATGCTGCTCAATATGGTGCGCGTGTGTCAGCACCTTACCCAAAATGATG
GAAGATTTTGTGTGCTGTTTCTTGTTCTGCGCATGTTGCTCCGTCCTATC
ACATGCAGGTGGATGAGTTCGACCTCATCAGCAACGCCGAGGAAGGGCCC
ATTGAGCTGTCCGCCAACGGCGCGATCCACTACACGCCGAGGTCCATTTT
CGTGTCGGCTCGCGCGGTGCGTTGACTAGACTATTTCGACACGCGTCCCT
CACCTGGTTCTGTCCAAACCGGCGGTCCCGCCGTCTCTGTTTTCCTTTTT
TCTGTACGCCCACACAGCCGTGCTTGCAGTACAGCCTAAAGTAGACGACG
CCGGGCAAAATACCTATCTTCTACTCGGCTCCTTGCAACGCAATACTTCA
AGCGCCACCTCACTCTCAGCTGAAACGCCGCTAGGGTACGTTCTGGTAGC
CGTTTCCACGCTCACCAGCATCGTTTGTTTGCCCGCTCAGATCGTAACCT
GTTTTTTCTTCCGGCTGATGTCGCCGTTGTGTCAATCCACGGTATTTTTC
CAGCCTTCCGCCGACGGGCCGCTCCGCAACGAGCTAACCGCCGCTGCTTC
TGCTGGCGCTCCTAGTTCTGCTGCTGATGCCGACCGAGGGACAGGAGAGA
CGACCGACGGTCAGCCTGGCGCCACCAACTCCGACAGCACGCCCTCCCTC
GCTCCGGCGCCCGCCCCCGCCTCAACGCCTGCGGGAGAC
back to top

Coding sequence (CDS) from alignment at S-firma_M_contig9565:799..3487+

>mRNA_S-firma_M_contig9565.20557.1 ID=mRNA_S-firma_M_contig9565.20557.1|Name=mRNA_S-firma_M_contig9565.20557.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1356bp|location=Sequence derived from alignment at S-firma_M_contig9565:799..3487+ (Sphaerotrichia firma Sfir_13m male)
ATGGCATGGCTCCTGGCTTGTCTCTCCCCCTGCGCCGCTGCCGGTATGCT
CTTTACCGAGCTCACGGACTGCGCAGACATTGCGCGGGAGGAGCTCTTTT
TCGCGGCCAAGCAGCTCACTGTCCGTGGGAAAATTGACTGCAGCGGCGAG
CGACGTGGAAGGATGGCATGGCTCCTGGCTTGTCTCTCCCCCTGCGCCGC
TGCCGGTATGCTCTTTACCGAGCTCACGGACTGCGCAGACATTGCGCGGG
AGGAGCTCTTTTTCGCGGCCAAGCAGCTCACTGTCCGTGGGAAAATTGAC
TGCAGCGGCGAGCGACGTGGAAGGCTCATCGGGTTCGCCCAAGACACCGT
GGTCATCTCCGACGAACCCCTTACCACCACCGACGTGCGGTGGGTTCTGT
TGAAGGGGGTGCGCGTTACCGTCATTGCTCCGTCAGTCGCCATCCAACGC
ACCGAGCTCATCGGGTTCGCCCAAGACACCGTGGTCATCTCCGACGAACC
CCTTACCACCACCGACGTGCGGTGGGTTCTGTTGAAGGGGGTGCGCGTTA
CCGTCATTGCTCCGTCAGTCGCCATCCAACGCACCGAGACATGGCGCACT
GTTCCCGTGGTGAAGGGACGCGGATCCTTGGAGTTTCAGGTCAGCGACCA
CCTCCCCGCGCCCCCCGGAAGCTCTCTGACATGGCGCACTGTTCCCGTGG
TGAAGGGACGCGGATCCTTGGAGTTTCAGGTCAGCGACCACCTCCCCGCG
CCCCCCGGAAGCTCTCTGGTGGATGAGTTCGACCTCATCAGCAACGCCGA
GGAAGGGCCCATTGAGCTGTCCGCCAACGGCGCGATCCACTACACGCCGA
GGTCCATTTTCGTGTCGGCTCGCGCGGTGGATGAGTTCGACCTCATCAGC
AACGCCGAGGAAGGGCCCATTGAGCTGTCCGCCAACGGCGCGATCCACTA
CACGCCGAGGTCCATTTTCGTGTCGGCTCGCGCGCCTTCCGCCGACGGGC
CGCTCCGCAACGAGCTAACCGCCGCTGCTTCTGCTGGCGCTCCTAGTTCT
GCTGCTGATGCCGACCGAGGGACAGGAGAGACGACCGACGGTCAGCCTGG
CGCCACCAACTCCGACAGCACGCCCTCCCTCGCTCCGGCGCCCGCCCCCG
CCTCAACGCCTGCGGGAGACCCTTCCGCCGACGGGCCGCTCCGCAACGAG
CTAACCGCCGCTGCTTCTGCTGGCGCTCCTAGTTCTGCTGCTGATGCCGA
CCGAGGGACAGGAGAGACGACCGACGGTCAGCCTGGCGCCACCAACTCCG
ACAGCACGCCCTCCCTCGCTCCGGCGCCCGCCCCCGCCTCAACGCCTGCG
GGAGAC
back to top