prot_S-firma_M_contig9555.20551.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig9555.20551.1
Unique Nameprot_S-firma_M_contig9555.20551.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length142
Homology
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BLAST of mRNA_S-firma_M_contig9555.20551.1 vs. uniprot
Match: D8LSM0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM0_ECTSI)

HSP 1 Score: 207 bits (527), Expect = 2.730e-59
Identity = 101/116 (87.07%), Postives = 107/116 (92.24%), Query Frame = 0 
Query:   26 MGVAGLTSYVNKNLRGAVAMEDLREGDTLAIDGSGWMFQLLLGQRVDHGGDYDLFHKTIVRKVARLRKAGLNLLVYMDGPTRKMKAATRERRRDQDGEKFANLYGYTLDGGGAFVG 141
            MGVAGLT Y+NKNLRGAVAMEDL+EGDTLAIDGSGWMF LL GQRVDHGGDYDL HKT+VR+V RLR+AGL LLVYMDGPTRKMKAATRERRR QDGEK ANLY YTLDGGG+FVG
Sbjct:    1 MGVAGLTGYINKNLRGAVAMEDLQEGDTLAIDGSGWMFHLLEGQRVDHGGDYDLLHKTVVREVGRLRQAGLKLLVYMDGPTRKMKAATRERRRGQDGEKLANLYAYTLDGGGSFVG 116
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9555.20551.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSM0_ECTSI2.730e-5987.07Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006085XPG N-terminalSMARTSM00485xpgn3coord: 26..124
e-value: 6.0E-4
score: 21.1
IPR006085XPG N-terminalPFAMPF00752XPG_Ncoord: 26..121
e-value: 3.8E-8
score: 33.7
NoneNo IPR availableGENE3D3.40.50.1010coord: 26..131
e-value: 3.0E-10
score: 41.8
IPR026832AsteroidPANTHERPTHR15665ASTEROID PROTEINcoord: 26..120
IPR029060PIN-like domain superfamilySUPERFAMILY88723PIN domain-likecoord: 26..131

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9555contigS-firma_M_contig9555:1197..3073 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9555.20551.1mRNA_S-firma_M_contig9555.20551.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig9555 1197..3075 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig9555.20551.1 ID=prot_S-firma_M_contig9555.20551.1|Name=mRNA_S-firma_M_contig9555.20551.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=142bp
QQQQQRESQSLLRRGRNGVSKGQCLMGVAGLTSYVNKNLRGAVAMEDLRE
GDTLAIDGSGWMFQLLLGQRVDHGGDYDLFHKTIVRKVARLRKAGLNLLV
YMDGPTRKMKAATRERRRDQDGEKFANLYGYTLDGGGAFVGV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029060PIN-like_dom_sf
IPR026832Asteroid
IPR006085XPG_DNA_repair_N