mRNA_S-firma_M_contig9555.20551.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9555.20551.1
Unique NamemRNA_S-firma_M_contig9555.20551.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9555.20551.1 vs. uniprot
Match: D8LSM0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM0_ECTSI)

HSP 1 Score: 207 bits (527), Expect = 2.730e-59
Identity = 101/116 (87.07%), Postives = 107/116 (92.24%), Query Frame = 1 
Query:   76 MGVAGLTSYVNKNLRGAVAMEDLREGDTLAIDGSGWMFQLLLGQRVDHGGDYDLFHKTIVRKVARLRKAGLNLLVYMDGPTRKMKAATRERRRDQDGEKFANLYGYTLDGGGAFVG 423
            MGVAGLT Y+NKNLRGAVAMEDL+EGDTLAIDGSGWMF LL GQRVDHGGDYDL HKT+VR+V RLR+AGL LLVYMDGPTRKMKAATRERRR QDGEK ANLY YTLDGGG+FVG
Sbjct:    1 MGVAGLTGYINKNLRGAVAMEDLQEGDTLAIDGSGWMFHLLEGQRVDHGGDYDLLHKTVVREVGRLRQAGLKLLVYMDGPTRKMKAATRERRRGQDGEKLANLYAYTLDGGGSFVG 116
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9555.20551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSM0_ECTSI2.730e-5987.07Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9555contigS-firma_M_contig9555:1197..3075 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score208.4
Seed ortholog evalue2.2e-51
Seed eggNOG ortholog2880.D8LSM0
Preferred nameYTHDC2
KEGG koko:K14442,ko:K20099
KEGG Pathwayko03018,map03018
EggNOG free text desc.positive regulation of polysome binding
EggNOG OGsCOG1643@1,KOG0921@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03041
Hectar predicted targeting categoryother localisation
Exons3
Model size428
Cds size426
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9555.20551.1prot_S-firma_M_contig9555.20551.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9555 1197..3073 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828790.8717074-CDS-S-firma_M_contig9555:1196..13461622828790.8717074-CDS-S-firma_M_contig9555:1196..1346Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9555 1197..1346 +
1697105164.4557884-CDS-S-firma_M_contig9555:1196..13461697105164.4557884-CDS-S-firma_M_contig9555:1196..1346Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9555 1197..1346 +
1622828790.884444-CDS-S-firma_M_contig9555:2318..24471622828790.884444-CDS-S-firma_M_contig9555:2318..2447Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9555 2319..2447 +
1697105164.467636-CDS-S-firma_M_contig9555:2318..24471697105164.467636-CDS-S-firma_M_contig9555:2318..2447Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9555 2319..2447 +
1622828790.8966308-CDS-S-firma_M_contig9555:2926..30731622828790.8966308-CDS-S-firma_M_contig9555:2926..3073Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9555 2927..3073 +
1697105164.4873178-CDS-S-firma_M_contig9555:2926..30731697105164.4873178-CDS-S-firma_M_contig9555:2926..3073Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9555 2927..3073 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9555.20551.1

>prot_S-firma_M_contig9555.20551.1 ID=prot_S-firma_M_contig9555.20551.1|Name=mRNA_S-firma_M_contig9555.20551.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=142bp
QQQQQRESQSLLRRGRNGVSKGQCLMGVAGLTSYVNKNLRGAVAMEDLRE
GDTLAIDGSGWMFQLLLGQRVDHGGDYDLFHKTIVRKVARLRKAGLNLLV
YMDGPTRKMKAATRERRRDQDGEKFANLYGYTLDGGGAFVGV
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mRNA from alignment at S-firma_M_contig9555:1197..3075+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9555.20551.1 ID=mRNA_S-firma_M_contig9555.20551.1|Name=mRNA_S-firma_M_contig9555.20551.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1879bp|location=Sequence derived from alignment at S-firma_M_contig9555:1197..3075+ (Sphaerotrichia firma Sfir_13m male)
CAGCAGCAGCAGCAGCGAGAGAGCCAGAGTCTGCTGCGAAGAGGGCGGAA
TGGCGTGAGCAAAGGCCAGTGCTTGATGGGCGTTGCAGGGCTGACCAGCT
ATGTCAACAAGAACTTGAGAGGGGCGGTGGCGATGGAAGATCTCCGAGAG
GTAAGCTCGACGTGGGTAGTGTGGAGTTGGAGAGCATGCGCACTACTGTC
CTGCGGGTTGTGTGCTGAATCCGATGAGTGATTGTGCGTTTCCAGAAGAG
CGAGCTCGATGCTCGATCAACATGAGCCTCATCGCAATATCACGACCCTG
CCGCAGCAGCGCAGCAGCCAAGGTCTGTGTGCACTCCGTACCATGTATTG
GGACGTGTATCAGCTCCATGGGTGTGGGTGAGAAAGCACCTGTTGCAACA
GGCGAAATTTCCCCGTGTCGGCCACGTTCATGTTTCAATAACATTTTTTT
TGCTGAGTCACCTGCCTCCTCAGGGGCAACCGAAAACCACAACTCACGTC
TGTTAGATTTCGCCGCACCTCTCCTAAAGCGAAGAGCGAAGGAAAAAAGC
GCGGGTACGCACGATGCGGCACCTTGACCTTTCCTAGGCACAACAGTACC
GTAGCACTGCCGCTGTGGGAACACCACTGACAATACCTATTTGGTGTTTG
TTGCAGGATTTCGAGTTGGCGAGTTGCCATACGGAGTATGATACTGCAAA
GTATGTCGCGGCCACCACTTTTTCAACCTGATGTAAGGTGGTGCAGGATA
CCACCGCCGTGGTACACAGAGCCGAACGATGCGTCCTCAGAAAACTAGCC
ACCCACGTTTCCAACATCTTGCGCTCCCCGGCGTTGCACACGATGCGTGC
GTGGTTCGACGACGGTAGAGTGCATGCATACCGTGTGCTGCCAACAGGTG
CAACACAATACATGCGCACCGCGAAGTTGCTTCTCTCGCAAAAGCGCCCG
CCGTCAGGACTTCCGGAAGGACTCCAAGGCATGAATACGGATGTATACCT
ACGGGGGTGTCATGAGTCTCGACTTCAAAGATGCCGATCCACACAGCACG
CGTCCCTTGCGCACGTTTACACCGGTTGACTTCTTTGCCATGTCCCTTTT
TTTCTGTGCGCGGCTGTTTCAGGGCGACACACTGGCTATCGACGGGTCCG
GGTGGATGTTTCAGCTCCTGCTGGGCCAGCGCGTCGACCACGGGGGGGAC
TATGACCTCTTCCACAAGACCATCGTCCGCAAAGTGGCACGGCTCCGAAA
GGTATCTACCCCGCTGCCTGCGCAAGCACGCTCCGAACATCTCGCGATTT
CTAGAATGTGGTATTCGCCATTGCGCACGTACCCCCTGCGTGCCCGTTGT
TCTAGAGAGCCTTTGGTTGCGCCTGCCGTTTGAGGGTTGCGGGTGTGCTT
CGTTTGTCAAGTGCACAATCGCCATCTGTCGAGCTGTGGCCGTGGTTCAA
CCTTGTAGTTCGTTCCCCCCTCACAGAAGGGTACTGCTGCCCTCGTGGAC
GTACGTACGTCACCACAGGCCCCCTCCCCGTCCCGTCCATCCCTCGCCTG
CCGTCCCACGCGCGCCTGGGCCGCAAACTGTCACAACAAGCGCCAAATAG
ATCGTGCAGGAAGCCCAACAGCGCCGGCTCACGTGCAGTTGCCGACCCCT
CGCGTAGTTACCGACTCCAAACTCAAGACTACGACGCCCCCCACGCGCGC
GCCTTCTCCTGATGCCCTCCCCACTCCCAGGCGGGTCTCAATCTGCTCGT
GTACATGGATGGGCCTACCCGGAAGATGAAGGCGGCCACGAGGGAGCGGC
GGCGCGACCAGGATGGGGAGAAGTTCGCAAACCTTTACGGCTACACGCTG
GACGGTGGCGGGGCGTTCGTCGGGGTGGG
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Coding sequence (CDS) from alignment at S-firma_M_contig9555:1197..3075+

>mRNA_S-firma_M_contig9555.20551.1 ID=mRNA_S-firma_M_contig9555.20551.1|Name=mRNA_S-firma_M_contig9555.20551.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=852bp|location=Sequence derived from alignment at S-firma_M_contig9555:1197..3075+ (Sphaerotrichia firma Sfir_13m male)
CAGCAGCAGCAGCAGCGAGAGAGCCAGAGTCTGCTGCGAAGAGGGCGGAA
TGGCGTGAGCAAAGGCCAGTGCTTGATGGGCGTTGCAGGGCTGACCAGCT
ATGTCAACAAGAACTTGAGAGGGGCGGTGGCGATGGAAGATCTCCGAGAG
CAGCAGCAGCAGCAGCGAGAGAGCCAGAGTCTGCTGCGAAGAGGGCGGAA
TGGCGTGAGCAAAGGCCAGTGCTTGATGGGCGTTGCAGGGCTGACCAGCT
ATGTCAACAAGAACTTGAGAGGGGCGGTGGCGATGGAAGATCTCCGAGAG
GGCGACACACTGGCTATCGACGGGTCCGGGTGGATGTTTCAGCTCCTGCT
GGGCCAGCGCGTCGACCACGGGGGGGACTATGACCTCTTCCACAAGACCA
TCGTCCGCAAAGTGGCACGGCTCCGAAAGGGCGACACACTGGCTATCGAC
GGGTCCGGGTGGATGTTTCAGCTCCTGCTGGGCCAGCGCGTCGACCACGG
GGGGGACTATGACCTCTTCCACAAGACCATCGTCCGCAAAGTGGCACGGC
TCCGAAAGGCGGGTCTCAATCTGCTCGTGTACATGGATGGGCCTACCCGG
AAGATGAAGGCGGCCACGAGGGAGCGGCGGCGCGACCAGGATGGGGAGAA
GTTCGCAAACCTTTACGGCTACACGCTGGACGGTGGCGGGGCGTTCGTCG
GGGTGGCGGGTCTCAATCTGCTCGTGTACATGGATGGGCCTACCCGGAAG
ATGAAGGCGGCCACGAGGGAGCGGCGGCGCGACCAGGATGGGGAGAAGTT
CGCAAACCTTTACGGCTACACGCTGGACGGTGGCGGGGCGTTCGTCGGGG
TG
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