prot_S-firma_M_contig9548.20543.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig9548.20543.1
Unique Nameprot_S-firma_M_contig9548.20543.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length183
Homology
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BLAST of mRNA_S-firma_M_contig9548.20543.1 vs. uniprot
Match: D8LRS8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRS8_ECTSI)

HSP 1 Score: 226 bits (575), Expect = 6.340e-69
Identity = 138/186 (74.19%), Postives = 151/186 (81.18%), Query Frame = 0 
Query:    1 MGHRRFALLGLAVVVLFAVDGAAAASKGAPRAGGHRRASKTAG--SRPSRSQRDMQDDREFQDWDGDARKGPRRPPSSKSSRGIRSAGSESNRVRPSST-GSARSSSRYQERGSNRRRGQGMELVPSRRSPPKNSVLAGLAASMKGKAASMQEDAKGKVTEWRNIAKTTVWFSSKMEKFMIQMTWP 183
            MGHRR ALLGLAVVVLFAVDGAAAASKGAPRAG  +R S  A   SRPSR   D +D+REFQ WDG+ +KG R           R  GS   RVRPSST GS+RSSSRYQE G++RRR +GMELVPSRRSPPK+S+L+GLAA+MKGKAASMQEDAKGKVTEWRNIAKTTVWFSSKMEKFMIQMTWP
Sbjct:    1 MGHRRLALLGLAVVVLFAVDGAAAASKGAPRAGSQQRRSTKASRSSRPSRRDID-EDEREFQGWDGETKKGTRXXXXXXXXXAARDDGSVGRRVRPSSTPGSSRSSSRYQESGTSRRRSRGMELVPSRRSPPKSSMLSGLAATMKGKAASMQEDAKGKVTEWRNIAKTTVWFSSKMEKFMIQMTWP 185
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9548.20543.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRS8_ECTSI6.340e-6974.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..25
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..183
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..24
score: 0.85
NoneNo IPR availableTMHMMTMhelixcoord: 7..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9548contigS-firma_M_contig9548:1673..2920 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9548.20543.1mRNA_S-firma_M_contig9548.20543.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig9548 1673..2920 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig9548.20543.1 ID=prot_S-firma_M_contig9548.20543.1|Name=mRNA_S-firma_M_contig9548.20543.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=183bp
MGHRRFALLGLAVVVLFAVDGAAAASKGAPRAGGHRRASKTAGSRPSRSQ
RDMQDDREFQDWDGDARKGPRRPPSSKSSRGIRSAGSESNRVRPSSTGSA
RSSSRYQERGSNRRRGQGMELVPSRRSPPKNSVLAGLAASMKGKAASMQE
DAKGKVTEWRNIAKTTVWFSSKMEKFMIQMTWP
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