mRNA_S-firma_M_contig9548.20543.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9548.20543.1
Unique NamemRNA_S-firma_M_contig9548.20543.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9548.20543.1 vs. uniprot
Match: D8LRS8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRS8_ECTSI)

HSP 1 Score: 226 bits (575), Expect = 6.340e-69
Identity = 138/186 (74.19%), Postives = 151/186 (81.18%), Query Frame = 1 
Query:    1 MGHRRFALLGLAVVVLFAVDGAAAASKGAPRAGGHRRASKTAG--SRPSRSQRDMQDDREFQDWDGDARKGPRRPPSSKSSRGIRSAGSESNRVRPSST-GSARSSSRYQERGSNRRRGQGMELVPSRRSPPKNSVLAGLAASMKGKAASMQEDAKGKVTEWRNIAKTTVWFSSKMEKFMIQMTWP 549
            MGHRR ALLGLAVVVLFAVDGAAAASKGAPRAG  +R S  A   SRPSR   D +D+REFQ WDG+ +KG R           R  GS   RVRPSST GS+RSSSRYQE G++RRR +GMELVPSRRSPPK+S+L+GLAA+MKGKAASMQEDAKGKVTEWRNIAKTTVWFSSKMEKFMIQMTWP
Sbjct:    1 MGHRRLALLGLAVVVLFAVDGAAAASKGAPRAGSQQRRSTKASRSSRPSRRDID-EDEREFQGWDGETKKGTRXXXXXXXXXAARDDGSVGRRVRPSSTPGSSRSSSRYQESGTSRRRSRGMELVPSRRSPPKSSMLSGLAATMKGKAASMQEDAKGKVTEWRNIAKTTVWFSSKMEKFMIQMTWP 185
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9548.20543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRS8_ECTSI6.340e-6974.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9548contigS-firma_M_contig9548:1673..2920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-08_002290.1
Exons3
Model size551
Cds size549
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9548.20543.1prot_S-firma_M_contig9548.20543.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9548 1673..2920 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828790.0534575-CDS-S-firma_M_contig9548:1672..17561622828790.0534575-CDS-S-firma_M_contig9548:1672..1756Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9548 1673..1756 -
1697105163.9583545-CDS-S-firma_M_contig9548:1672..17561697105163.9583545-CDS-S-firma_M_contig9548:1672..1756Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9548 1673..1756 -
1622828790.068108-CDS-S-firma_M_contig9548:2209..23601622828790.068108-CDS-S-firma_M_contig9548:2209..2360Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9548 2210..2360 -
1697105163.9689925-CDS-S-firma_M_contig9548:2209..23601697105163.9689925-CDS-S-firma_M_contig9548:2209..2360Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9548 2210..2360 -
1622828790.0826335-CDS-S-firma_M_contig9548:2606..29201622828790.0826335-CDS-S-firma_M_contig9548:2606..2920Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9548 2607..2920 -
1697105163.9795625-CDS-S-firma_M_contig9548:2606..29201697105163.9795625-CDS-S-firma_M_contig9548:2606..2920Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9548 2607..2920 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9548.20543.1

>prot_S-firma_M_contig9548.20543.1 ID=prot_S-firma_M_contig9548.20543.1|Name=mRNA_S-firma_M_contig9548.20543.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=183bp
MGHRRFALLGLAVVVLFAVDGAAAASKGAPRAGGHRRASKTAGSRPSRSQ
RDMQDDREFQDWDGDARKGPRRPPSSKSSRGIRSAGSESNRVRPSSTGSA
RSSSRYQERGSNRRRGQGMELVPSRRSPPKNSVLAGLAASMKGKAASMQE
DAKGKVTEWRNIAKTTVWFSSKMEKFMIQMTWP
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mRNA from alignment at S-firma_M_contig9548:1673..2920-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9548.20543.1 ID=mRNA_S-firma_M_contig9548.20543.1|Name=mRNA_S-firma_M_contig9548.20543.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1248bp|location=Sequence derived from alignment at S-firma_M_contig9548:1673..2920- (Sphaerotrichia firma Sfir_13m male)
ATGGGCCACCGTCGGTTTGCCCTGCTGGGCTTGGCGGTGGTTGTTCTCTT
CGCTGTAGATGGTGCTGCAGCTGCTTCGAAGGGTGCGCCAAGAGCAGGAG
GCCATCGGCGCGCGTCCAAAACCGCAGGAAGCCGCCCGAGCCGCAGCCAA
CGGGACATGCAGGATGACCGGGAATTTCAGGATTGGGATGGGGATGCCAG
GAAGGGACCCAGGAGGCCGCCTAGCAGCAAGTCTAGCAGGGGAATACGGA
GCGCTGGATCGGAAAGCAACCGTGTGCGGCCATCGTCGACAGGCTCCGCT
CGCTCGAGCTCAAGGTCCGTCTTCACGACGCGTGGCAACGCCAAACGAGA
GCAACGCAGCATTGCATGCGGCCCTCAGCCTGCAGCCGCGTTTATTATGC
ACTAGTAGGTTCGAGAGATAGGACCTGTGAAATATTTGATTTGCGTCGAT
TCAATCTACCCGTGCGGTACAGATGGCTAGAATGCTAGACGGACGCTCTC
TCCCTTCATGACAACATGCGAATGGCTTCAATTTCGGGTGTTCCGCACAT
GGTCCCACAGGTATCAGGAGCGTGGCTCAAATCGACGCCGAGGCCAAGGG
ATGGAGCTGGTGCCCAGTAGGCGCAGCCCTCCCAAGAACAGTGTGCTGGC
AGGGCTGGCAGCCTCTATGAAGGGCAAGGCGGCGTCAATGCAAGAAGATG
CCAAGGGAAAGGTTGGCGGTTTGAGAATGATACGCGTGCGAATCTATCCT
CGTCGGCACTGACACGAAGGGAGCTACTCTTGCCGTGTAACTGGCTGCCA
ACGATTCCGCCCACACGGCCCTCAACATGCTGTAACATCTCCTCACGAAG
CATAAAGCGGGATGGAAGACACGCGGACACCGGGATTCGGGATCACGCCA
TCTTGTTCCTGTTGCATATTACATTGTATACGGAGCATCAGAGATGAGAT
ATGCTGCTGATGTATACTGCTGCCTGTGTTGCGTTACAACCGTGATCGCC
CGGGCTGGTGAACGGAAATCTGAACGCGGGGGAATCGGATGTGGAATCTC
GCTATGGGAAGTGGCCCCCATATGTTGTCGGCACCCAGTGCCGGTCCTGA
GCAGTCACAGAGCAGTCACAGAGCAAACATTTGTTCGGTCCCTTTAACGG
CTGTTTGACTCCAGGTGACGGAATGGAGAAACATCGCGAAGACAACGGTG
TGGTTCTCGAGCAAGATGGAAAAGTTCATGATCCAAATGACATGGCCG
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Coding sequence (CDS) from alignment at S-firma_M_contig9548:1673..2920-

>mRNA_S-firma_M_contig9548.20543.1 ID=mRNA_S-firma_M_contig9548.20543.1|Name=mRNA_S-firma_M_contig9548.20543.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1098bp|location=Sequence derived from alignment at S-firma_M_contig9548:1673..2920- (Sphaerotrichia firma Sfir_13m male)
ATGGGCCACCGTCGGTTTGCCCTGCTGGGCTTGGCGGTGGTTGTTCTCTT
CGCTGTAGATGGTGCTGCAGCTGCTTCGAAGGGTGCGCCAAGAGCAGGAG
GCCATCGGCGCGCGTCCAAAACCGCAGGAAGCCGCCCGAGCCGCAGCCAA
CGGGACATGCAGGATGACCGGGAATTTCAGGATTGGGATGGGGATGCCAG
GAAGGGACCCAGGAGGCCGCCTAGCAGCAAGTCTAGCAGGGGAATACGGA
GCGCTGGATCGGAAAGCAACCGTGTGCGGCCATCGTCGACAGGCTCCGCT
CGCTCGAGCTCAAGATGGGCCACCGTCGGTTTGCCCTGCTGGGCTTGGCG
GTGGTTGTTCTCTTCGCTGTAGATGGTGCTGCAGCTGCTTCGAAGGGTGC
GCCAAGAGCAGGAGGCCATCGGCGCGCGTCCAAAACCGCAGGAAGCCGCC
CGAGCCGCAGCCAACGGGACATGCAGGATGACCGGGAATTTCAGGATTGG
GATGGGGATGCCAGGAAGGGACCCAGGAGGCCGCCTAGCAGCAAGTCTAG
CAGGGGAATACGGAGCGCTGGATCGGAAAGCAACCGTGTGCGGCCATCGT
CGACAGGCTCCGCTCGCTCGAGCTCAAGGTATCAGGAGCGTGGCTCAAAT
CGACGCCGAGGCCAAGGGATGGAGCTGGTGCCCAGTAGGCGCAGCCCTCC
CAAGAACAGTGTGCTGGCAGGGCTGGCAGCCTCTATGAAGGGCAAGGCGG
CGTCAATGCAAGAAGATGCCAAGGGAAAGGTATCAGGAGCGTGGCTCAAA
TCGACGCCGAGGCCAAGGGATGGAGCTGGTGCCCAGTAGGCGCAGCCCTC
CCAAGAACAGTGTGCTGGCAGGGCTGGCAGCCTCTATGAAGGGCAAGGCG
GCGTCAATGCAAGAAGATGCCAAGGGAAAGGTGACGGAATGGAGAAACAT
CGCGAAGACAACGGTGTGGTTCTCGAGCAAGATGGAAAAGTTCATGATCC
AAATGACATGGCCGGTGACGGAATGGAGAAACATCGCGAAGACAACGGTG
TGGTTCTCGAGCAAGATGGAAAAGTTCATGATCCAAATGACATGGCCG
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