prot_S-firma_M_contig9518.20507.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig9518.20507.1
Unique Nameprot_S-firma_M_contig9518.20507.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length111
Homology
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BLAST of mRNA_S-firma_M_contig9518.20507.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 2.160e-19
Identity = 54/97 (55.67%), Postives = 64/97 (65.98%), Query Frame = 0 
Query:    1 GNVPAPTPVVAPVAPVS-EPT-----APT-DGVCSNGIRGVESDSGDYCCPTSCGVCDSADCVADREGCCGVVIEESGVMCDDSDMAPCIIN-DGMG 89
            G  PAPTP      PV+ EPT     APT  G+CSNG+ G+ES SGDYCCP +C  CD  +C  D   CCG  IEE+GV+CDDS+ APCII+ DG G
Sbjct: 3046 GEAPAPTPEPVRPTPVTMEPTTEPPAAPTTQGLCSNGVPGIESASGDYCCPATCRACDGDNCYLDGLFCCGDDIEETGVLCDDSEEAPCIIDIDGGG 3142
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BLAST of mRNA_S-firma_M_contig9518.20507.1 vs. uniprot
Match: D8LG71_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG71_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 5.110e-7
Identity = 29/65 (44.62%), Postives = 34/65 (52.31%), Query Frame = 0 
Query:   27 CSNGIRGVESDSGDYCCPTSCGVCDSADCVADREG------CCGVVIEESGVMCDDSDMAPCIIN 85
            C+ GI GVES S D CC   CG C    C            CC   I ESGVMC D+ +APCI++
Sbjct:   25 CAGGISGVESTSLDVCCTLECGTCGGVGCTPANTSSLTANDCCATEISESGVMCSDTGVAPCILS 89
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9518.20507.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJ68_ECTSI2.160e-1955.67WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LG71_ECTSI5.110e-744.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9518contigS-firma_M_contig9518:6..794 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9518.20507.1mRNA_S-firma_M_contig9518.20507.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig9518 6..794 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig9518.20507.1 ID=prot_S-firma_M_contig9518.20507.1|Name=mRNA_S-firma_M_contig9518.20507.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=111bp
GNVPAPTPVVAPVAPVSEPTAPTDGVCSNGIRGVESDSGDYCCPTSCGVC
DSADCVADREGCCGVVIEESGVMCDDSDMAPCIINDGMGKPTPAPVPTPT
MPTDSTDGTC*
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