mRNA_S-firma_M_contig9518.20507.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9518.20507.1
Unique NamemRNA_S-firma_M_contig9518.20507.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
[Close]
BLAST of mRNA_S-firma_M_contig9518.20507.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 2.160e-19
Identity = 54/97 (55.67%), Postives = 64/97 (65.98%), Query Frame = 1 
Query:    1 GNVPAPTPVVAPVAPVS-EPT-----APT-DGVCSNGIRGVESDSGDYCCPTSCGVCDSADCVADREGCCGVVIEESGVMCDDSDMAPCIIN-DGMG 267
            G  PAPTP      PV+ EPT     APT  G+CSNG+ G+ES SGDYCCP +C  CD  +C  D   CCG  IEE+GV+CDDS+ APCII+ DG G
Sbjct: 3046 GEAPAPTPEPVRPTPVTMEPTTEPPAAPTTQGLCSNGVPGIESASGDYCCPATCRACDGDNCYLDGLFCCGDDIEETGVLCDDSEEAPCIIDIDGGG 3142
[Close]
BLAST of mRNA_S-firma_M_contig9518.20507.1 vs. uniprot
Match: D8LG71_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG71_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 5.110e-7
Identity = 29/65 (44.62%), Postives = 34/65 (52.31%), Query Frame = 1 
Query:   79 CSNGIRGVESDSGDYCCPTSCGVCDSADCVADREG------CCGVVIEESGVMCDDSDMAPCIIN 255
            C+ GI GVES S D CC   CG C    C            CC   I ESGVMC D+ +APCI++
Sbjct:   25 CAGGISGVESTSLDVCCTLECGTCGGVGCTPANTSSLTANDCCATEISESGVMCSDTGVAPCILS 89
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9518.20507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJ68_ECTSI2.160e-1955.67WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LG71_ECTSI5.110e-744.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9518contigS-firma_M_contig9518:6..794 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue1.6e-17
Seed eggNOG ortholog2880.D7FJ68
Preferred nameMTPAP
KEGG koko:K08342,ko:K16462,ko:K17478,ko:K18060
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
EggNOG free text desc.importin-alpha family protein binding
EggNOG OGsCOG0086@1,KOG0260@2759,KOG4725@1,KOG4725@2759
EC2.7.7.19
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01009,ko03029,ko03036,ko03110,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Exons3
Model size333
Cds size333
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9518.20507.1prot_S-firma_M_contig9518.20507.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9518 6..794 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828786.6194212-CDS-S-firma_M_contig9518:5..821622828786.6194212-CDS-S-firma_M_contig9518:5..82Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9518 6..82 -
1697105161.9426417-CDS-S-firma_M_contig9518:5..821697105161.9426417-CDS-S-firma_M_contig9518:5..82Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9518 6..82 -
1622828786.6366441-CDS-S-firma_M_contig9518:305..4881622828786.6366441-CDS-S-firma_M_contig9518:305..488Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9518 306..488 -
1697105161.9533992-CDS-S-firma_M_contig9518:305..4881697105161.9533992-CDS-S-firma_M_contig9518:305..488Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9518 306..488 -
1622828786.6486106-CDS-S-firma_M_contig9518:721..7941622828786.6486106-CDS-S-firma_M_contig9518:721..794Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9518 722..794 -
1697105161.9619482-CDS-S-firma_M_contig9518:721..7941697105161.9619482-CDS-S-firma_M_contig9518:721..794Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9518 722..794 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9518.20507.1

>prot_S-firma_M_contig9518.20507.1 ID=prot_S-firma_M_contig9518.20507.1|Name=mRNA_S-firma_M_contig9518.20507.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=111bp
GNVPAPTPVVAPVAPVSEPTAPTDGVCSNGIRGVESDSGDYCCPTSCGVC
DSADCVADREGCCGVVIEESGVMCDDSDMAPCIINDGMGKPTPAPVPTPT
MPTDSTDGTC*
back to top

mRNA from alignment at S-firma_M_contig9518:6..794-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9518.20507.1 ID=mRNA_S-firma_M_contig9518.20507.1|Name=mRNA_S-firma_M_contig9518.20507.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=789bp|location=Sequence derived from alignment at S-firma_M_contig9518:6..794- (Sphaerotrichia firma Sfir_13m male)
GGTAATGTTCCGGCACCTACCCCGGTCGTGGCGCCGGTTGCCCCTGTATC
CGAGCCTACCGCCCCGACTGACGGTGAGCGGTTGGAGTGTCGGTATCTCG
CGTATGTATATACGTACGTGTCTCAAGCATCCTTCTGGTTGCTCGGGACA
GGATGACGACAGACTTCCACGCGTACATGTAACGACACGTTGCGCACAGC
AGTATTGGGAAGTCACTCGAATGCTGGGCTTGTTATGTCGCGGCAAAACG
TCCTTTTTTGTAGTCTGATCTTCGTCTCCTTGTGTGTGAACGTCCTGGCG
AAGCAGGCGTCTGCAGCAACGGCATCCGCGGCGTTGAGTCTGACAGCGGT
GACTACTGCTGCCCCACGTCGTGCGGAGTCTGTGATAGCGCCGACTGCGT
CGCGGACAGAGAGGGTTGCTGCGGTGTCGTGATCGAGGAATCGGGCGTGA
TGTGCGACGACTCCGACATGGCCCCTTGCATCATCAACGGTAGGTGTTCG
TCACTGGTTCGAACCTCGAGCATGTTCTGCACATGTAGTACGGAGTATAC
AATGTGTGTGTGTGTGTGTGTGTGTGTCGCGACACACCCAGCTTCGCAAG
TCACACATTGATGAGTTCGACCATGGCTATCTGTTAAGTTTCTTGTTGGA
GTTTCGAGCTCCGCACTAAAAACTCTCCACTTGTTGCCCGTGCCCCGTTT
TTCCCCACGCAGACGGTATGGGCAAGCCTACTCCTGCTCCTGTTCCGACC
CCGACCATGCCAACCGACAGCACGGACGGTACGTGCTAA
back to top

Coding sequence (CDS) from alignment at S-firma_M_contig9518:6..794-

>mRNA_S-firma_M_contig9518.20507.1 ID=mRNA_S-firma_M_contig9518.20507.1|Name=mRNA_S-firma_M_contig9518.20507.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=666bp|location=Sequence derived from alignment at S-firma_M_contig9518:6..794- (Sphaerotrichia firma Sfir_13m male)
GGTAATGTTCCGGCACCTACCCCGGTCGTGGCGCCGGTTGCCCCTGTATC
CGAGCCTACCGCCCCGACTGACGGGTAATGTTCCGGCACCTACCCCGGTC
GTGGCGCCGGTTGCCCCTGTATCCGAGCCTACCGCCCCGACTGACGGCGT
CTGCAGCAACGGCATCCGCGGCGTTGAGTCTGACAGCGGTGACTACTGCT
GCCCCACGTCGTGCGGAGTCTGTGATAGCGCCGACTGCGTCGCGGACAGA
GAGGGTTGCTGCGGTGTCGTGATCGAGGAATCGGGCGTGATGTGCGACGA
CTCCGACATGGCCCCTTGCATCATCAACGGCGTCTGCAGCAACGGCATCC
GCGGCGTTGAGTCTGACAGCGGTGACTACTGCTGCCCCACGTCGTGCGGA
GTCTGTGATAGCGCCGACTGCGTCGCGGACAGAGAGGGTTGCTGCGGTGT
CGTGATCGAGGAATCGGGCGTGATGTGCGACGACTCCGACATGGCCCCTT
GCATCATCAACGACGGTATGGGCAAGCCTACTCCTGCTCCTGTTCCGACC
CCGACCATGCCAACCGACAGCACGGACGGTACGTGCTAAACGGTATGGGC
AAGCCTACTCCTGCTCCTGTTCCGACCCCGACCATGCCAACCGACAGCAC
GGACGGTACGTGCTAA
back to top