prot_S-firma_M_contig950.20488.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig950.20488.1
Unique Nameprot_S-firma_M_contig950.20488.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length334
Homology
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BLAST of mRNA_S-firma_M_contig950.20488.1 vs. uniprot
Match: A0A6H5KWU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU5_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 3.300e-31
Identity = 215/347 (61.96%), Postives = 237/347 (68.30%), Query Frame = 0 
Query:    1 MYCLNPPLKRAPKGDWLCPNCAKKVLAAADSEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------LRLAALAVLNESSEDPGN--ETANGVEGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDICLICGQDGDPSTFLHCYECSGGAGGIGVYHRSCIKAPPDTV--DGEWLCPRCVTKKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAADGLDSA----KKAKWEWSESQEALLLAAVKKVGAGKWRQMVEDPAFDFEGKPGKALGSKWRSLSKR 330
            +YCL+PPLKRAPKGDWLCP C +KVL A+  ++                     XXXXXXXXXXXXXXXXXXXXXXXXX         +RLAAL                ANGV G   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       DICL+C +  DP   L C  CSGG  G+G+YH  C+  P D++  +GEW+CPRCVTKKR   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             KK +  WS S EALL  AVKKVGAGKW++M EDP FDFEG P  AL  KWR+LS++
Sbjct: 1179 VYCLSPPLKRAPKGDWLCPKCVEKVLDASGDDDVPASASTTGPARKGKGSSASKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQQEMRLAALXXXXXXXXXXXXLANNANGVVG-ANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEEEEEEDICLVCCEVRDPDRILRCSSCSGGGSGMGIYHNECLPKPLDSMPAEGEWVCPRCVTKKRKHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKPRRAWSASMEALLATAVKKVGAGKWKEMEEDPEFDFEGMPANALKQKWRTLSQK 1524
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BLAST of mRNA_S-firma_M_contig950.20488.1 vs. uniprot
Match: D8LN06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN06_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 6.960e-29
Identity = 152/255 (59.61%), Postives = 170/255 (66.67%), Query Frame = 0 
Query:   80 LRLAALAVLNESSEDPGNETANGVEG--DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDICLICGQDGDPSTFLHCYECSGGAGGIGVYHRSCIKAPPDTV--DGEWLCPRCVTKKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAADGLDSAKKAKWEWSESQEALLLAAVKKVGAGKWRQMVEDPAFDFEGKPGKALGSKWRSLSKR 330
            +RLAALAVL ESSED   E AN   G  D                 XXXXXXXXXXXXXXX       DICL+C +  DP   L C  CSGG  G+G+YH  C+  P +++  +GEW+CPRCVTKKR        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            +  WS S EALL  AVKK+GAGKW++M EDP FDFEG P  AL  KWR+LS++
Sbjct:    1 MRLAALAVLEESSED-NEEPANNANGVVDANESGEETESDGPEATAXXXXXXXXXXXXXXXTEEEEEEDICLVCCEVRDPDRILRCSNCSGGGSGMGIYHNECLPKPLESMPAEGEWVCPRCVTKKRKHGGPGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----XXXXXXPRRAWSSSMEALLATAVKKMGAGKWKEMEEDPEFDFEGMPANALRQKWRTLSQK 249
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig950.20488.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KWU5_9PHAE3.300e-3161.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN06_ECTSI6.960e-2959.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 58..90
NoneNo IPR availableGENE3D1.10.10.60coord: 272..331
e-value: 1.2E-7
score: 33.1
NoneNo IPR availablePANTHERPTHR47162:SF3coord: 1..68
NoneNo IPR availablePANTHERPTHR47162FAMILY NOT NAMEDcoord: 144..218
coord: 1..68
NoneNo IPR availablePANTHERPTHR47162:SF3coord: 144..218
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 109..205
e-value: 3.3E-13
score: 51.4
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..48
e-value: 6.8E-7
score: 30.8
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 145..200
score: 8.707
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 132..202
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 1..24
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 276..329

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig950contigS-firma_M_contig950:18394..21417 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig950.20488.1mRNA_S-firma_M_contig950.20488.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig950 17891..21718 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig950.20488.1 ID=prot_S-firma_M_contig950.20488.1|Name=mRNA_S-firma_M_contig950.20488.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=334bp
MYCLNPPLKRAPKGDWLCPNCAKKVLAAADSEEAESSSAEAKGAANGKGK
ASAASTAAAAAAAAAAKAEAARKEQEREELRLAALAVLNESSEDPGNETA
NGVEGDGDGDDDDEGEETESETETEASRSDAEAEEGADDEEEEEEDICLI
CGQDGDPSTFLHCYECSGGAGGIGVYHRSCIKAPPDTVDGEWLCPRCVTK
KRKSGGGKSPAGKKKAKGGGAAATPSAGKKKAKEDHGGAAAAAASKKRKA
PAGEGGGGASGSSAAGAADGLDSAKKAKWEWSESQEALLLAAVKKVGAGK
WRQMVEDPAFDFEGKPGKALGSKWRSLSKRAPG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeobox-like_sf
IPR011011Znf_FYVE_PHD
IPR019787Znf_PHD-finger
IPR013083Znf_RING/FYVE/PHD