mRNA_S-firma_M_contig950.20488.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig950.20488.1
Unique NamemRNA_S-firma_M_contig950.20488.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
[Close]
BLAST of mRNA_S-firma_M_contig950.20488.1 vs. uniprot
Match: A0A6H5KWU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU5_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 5.250e-49
Identity = 240/374 (64.17%), Postives = 263/374 (70.32%), Query Frame = 2 
Query:  221 DAPCLVCGGLDNPNKALLCDGCDGCYHMYCLNPPLKRAPKGDWLCPNCAKKVLAAADSEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------LRLAALAVLNESSEDPGN--ETANGVEGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDICLICGQDGDPSTFLHCYECSGGAGGIGVYHRSCIKAPPDTV--DGEWLCPRCVTKKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAADGLDSA----KKAKWEWSESQEALLLAAVKKVGAGKWRQMVEDPAFDFEGKPGKALGSKWRSLSKR 1291
            D PCLVCGGLDNP+KALLCDGCDGCYH+YCL+PPLKRAPKGDWLCP C +KVL A+  ++                     XXXXXXXXXXXXXXXXXXXXXXXXX         +RLAAL                ANGV G   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       DICL+C +  DP   L C  CSGG  G+G+YH  C+  P D++  +GEW+CPRCVTKKR   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             KK +  WS S EALL  AVKKVGAGKW++M EDP FDFEG P  AL  KWR+LS++
Sbjct: 1152 DDPCLVCGGLDNPDKALLCDGCDGCYHVYCLSPPLKRAPKGDWLCPKCVEKVLDASGDDDVPASASTTGPARKGKGSSASKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQQEMRLAALXXXXXXXXXXXXLANNANGVVG-ANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEEEEEEDICLVCCEVRDPDRILRCSSCSGGGSGMGIYHNECLPKPLDSMPAEGEWVCPRCVTKKRKHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKPRRAWSASMEALLATAVKKVGAGKWKEMEEDPEFDFEGMPANALKQKWRTLSQK 1524
[Close]
BLAST of mRNA_S-firma_M_contig950.20488.1 vs. uniprot
Match: D8LN06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN06_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 3.050e-27
Identity = 152/255 (59.61%), Postives = 170/255 (66.67%), Query Frame = 2 
Query:  539 LRLAALAVLNESSEDPGNETANGVEG--DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDICLICGQDGDPSTFLHCYECSGGAGGIGVYHRSCIKAPPDTV--DGEWLCPRCVTKKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAADGLDSAKKAKWEWSESQEALLLAAVKKVGAGKWRQMVEDPAFDFEGKPGKALGSKWRSLSKR 1291
            +RLAALAVL ESSED   E AN   G  D                 XXXXXXXXXXXXXXX       DICL+C +  DP   L C  CSGG  G+G+YH  C+  P +++  +GEW+CPRCVTKKR        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            +  WS S EALL  AVKK+GAGKW++M EDP FDFEG P  AL  KWR+LS++
Sbjct:    1 MRLAALAVLEESSED-NEEPANNANGVVDANESGEETESDGPEATAXXXXXXXXXXXXXXXTEEEEEEDICLVCCEVRDPDRILRCSNCSGGGSGMGIYHNECLPKPLESMPAEGEWVCPRCVTKKRKHGGPGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----XXXXXXPRRAWSSSMEALLATAVKKMGAGKWKEMEEDPEFDFEGMPANALRQKWRTLSQK 249
[Close]
BLAST of mRNA_S-firma_M_contig950.20488.1 vs. uniprot
Match: A0A7S1JGF3_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1JGF3_9EUGL)

HSP 1 Score: 80.9 bits (198), Expect = 2.570e-14
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 2 
Query:  227 PCLVCGGLDNPNKALLCDGCDGCYHMYCLNPPLKRAPKGDWLCPNCAKK 373
            PC++CGG +   +++LCDGCDG YH++CL PPLK  P GDW CP C  K
Sbjct:   32 PCVICGGKEEAERSVLCDGCDGAYHIFCLRPPLKTIPDGDWFCPQCQAK 80
[Close]
BLAST of mRNA_S-firma_M_contig950.20488.1 vs. uniprot
Match: A0A7S1CM23_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CM23_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.930e-12
Identity = 35/61 (57.38%), Postives = 41/61 (67.21%), Query Frame = 2 
Query:  221 DAPCLVCGGLDNPNKALLCDGCDGCYHMYCLNPPLKRAPKGDWLCPNCAKKVLAAADSEEA 403
            D  C VCGGL  P+K LLCD CDG YH++CL PPLK  P GDW CP+C + +    DS EA
Sbjct:  416 DPGCRVCGGLHKPSKVLLCDHCDGEYHLFCLKPPLKAVPAGDWACPDCTELL----DSVEA 472
[Close]
BLAST of mRNA_S-firma_M_contig950.20488.1 vs. uniprot
Match: A0A835SC30_9CHLO (PHD-type domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835SC30_9CHLO)

HSP 1 Score: 79.3 bits (194), Expect = 1.560e-11
Identity = 36/61 (59.02%), Postives = 41/61 (67.21%), Query Frame = 2 
Query:  221 DAPCLVCGGLDNPNKALLCDGCDGCYHMYCLNPPLKRAPKGDWLCPNCAKKVLAAADSEEA 403
            D  C VCGG D+P+  LLCD CDG YHM CL+PPLK  P GDW CPNC      AAD+ +A
Sbjct: 1620 DTLCAVCGGGDDPDTILLCDTCDGGYHMGCLDPPLKDIPDGDWHCPNCT-----AADASKA 1675
[Close]
BLAST of mRNA_S-firma_M_contig950.20488.1 vs. uniprot
Match: D8M555_BLAHO (PHD-type domain-containing protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M555_BLAHO)

HSP 1 Score: 75.5 bits (184), Expect = 1.660e-11
Identity = 29/55 (52.73%), Postives = 36/55 (65.45%), Query Frame = 2 
Query:  230 CLVCGGLDNPNKALLCDGCDGCYHMYCLNPPLKRAPKGDWLCPNCAKKVLAAADS 394
            C VCG  D     LLCDGCD  +H++CLNPPLK+ P GDW CP C +K +   D+
Sbjct:   65 CEVCGRSDKEESLLLCDGCDKGFHLFCLNPPLKQIPSGDWYCPGCLEKRVTRGDA 119
[Close]
BLAST of mRNA_S-firma_M_contig950.20488.1 vs. uniprot
Match: A0A673HEG1_9TELE ([Histone H3]-trimethyl-L-lysine(4) demethylase n=1 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=A0A673HEG1_9TELE)

HSP 1 Score: 74.7 bits (182), Expect = 3.680e-10
Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = 2 
Query:  230 CLVCGGLDNPNKALLCDGCDGCYHMYCLNPPLKRAPKGDWLCPNC 364
            CLVCGG D+ ++ LLCDGCD  YH +CL PPL   PKGDW CP C
Sbjct:  244 CLVCGGGDDEDRLLLCDGCDDSYHTFCLIPPLHDVPKGDWRCPKC 288
[Close]
BLAST of mRNA_S-firma_M_contig950.20488.1 vs. uniprot
Match: A0A673HDD9_9TELE ([Histone H3]-trimethyl-L-lysine(4) demethylase n=6 Tax=Cyprininae TaxID=2743694 RepID=A0A673HDD9_9TELE)

HSP 1 Score: 74.7 bits (182), Expect = 3.690e-10
Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = 2 
Query:  230 CLVCGGLDNPNKALLCDGCDGCYHMYCLNPPLKRAPKGDWLCPNC 364
            CLVCGG D+ ++ LLCDGCD  YH +CL PPL   PKGDW CP C
Sbjct:  239 CLVCGGGDDEDRLLLCDGCDDSYHTFCLIPPLHDVPKGDWRCPKC 283
[Close]
BLAST of mRNA_S-firma_M_contig950.20488.1 vs. uniprot
Match: A0A673HE83_9TELE ([Histone H3]-trimethyl-L-lysine(4) demethylase n=1 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=A0A673HE83_9TELE)

HSP 1 Score: 74.7 bits (182), Expect = 3.700e-10
Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = 2 
Query:  230 CLVCGGLDNPNKALLCDGCDGCYHMYCLNPPLKRAPKGDWLCPNC 364
            CLVCGG D+ ++ LLCDGCD  YH +CL PPL   PKGDW CP C
Sbjct:  296 CLVCGGGDDEDRLLLCDGCDDSYHTFCLIPPLHDVPKGDWRCPKC 340
[Close]
BLAST of mRNA_S-firma_M_contig950.20488.1 vs. uniprot
Match: A0A673HE89_9TELE ([Histone H3]-trimethyl-L-lysine(4) demethylase n=1 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=A0A673HE89_9TELE)

HSP 1 Score: 74.7 bits (182), Expect = 3.710e-10
Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = 2 
Query:  230 CLVCGGLDNPNKALLCDGCDGCYHMYCLNPPLKRAPKGDWLCPNC 364
            CLVCGG D+ ++ LLCDGCD  YH +CL PPL   PKGDW CP C
Sbjct:  296 CLVCGGGDDEDRLLLCDGCDDSYHTFCLIPPLHDVPKGDWRCPKC 340
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig950.20488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWU5_9PHAE5.250e-4964.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN06_ECTSI3.050e-2759.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1JGF3_9EUGL2.570e-1457.14Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S1CM23_9STRA1.930e-1257.38Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A835SC30_9CHLO1.560e-1159.02PHD-type domain-containing protein n=1 Tax=Chlamyd... [more]
D8M555_BLAHO1.660e-1152.73PHD-type domain-containing protein n=1 Tax=Blastoc... [more]
A0A673HEG1_9TELE3.680e-1064.44[Histone H3]-trimethyl-L-lysine(4) demethylase n=1... [more]
A0A673HDD9_9TELE3.690e-1064.44[Histone H3]-trimethyl-L-lysine(4) demethylase n=6... [more]
A0A673HE83_9TELE3.700e-1064.44[Histone H3]-trimethyl-L-lysine(4) demethylase n=1... [more]
A0A673HE89_9TELE3.710e-1064.44[Histone H3]-trimethyl-L-lysine(4) demethylase n=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig950contigS-firma_M_contig950:17891..21718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionPHD-type zinc finger and SANT/Myb domain protein
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHomeodomain-like
Ec32 orthologEc-27_000910.1
Exons5
Model size1806
Cds size1002
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828784.5415428-UTR-S-firma_M_contig950:17890..183931622828784.5415428-UTR-S-firma_M_contig950:17890..18393Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig950 17891..18393 -
1697105160.821729-UTR-S-firma_M_contig950:17890..183931697105160.821729-UTR-S-firma_M_contig950:17890..18393Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig950 17891..18393 -
1622828784.6836143-UTR-S-firma_M_contig950:21417..217181622828784.6836143-UTR-S-firma_M_contig950:21417..21718Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig950 21418..21718 -
1697105160.8819277-UTR-S-firma_M_contig950:21417..217181697105160.8819277-UTR-S-firma_M_contig950:21417..21718Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig950 21418..21718 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828784.557124-CDS-S-firma_M_contig950:18393..188221622828784.557124-CDS-S-firma_M_contig950:18393..18822Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig950 18394..18822 -
1697105160.8322365-CDS-S-firma_M_contig950:18393..188221697105160.8322365-CDS-S-firma_M_contig950:18393..18822Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig950 18394..18822 -
1622828784.571706-CDS-S-firma_M_contig950:19220..193971622828784.571706-CDS-S-firma_M_contig950:19220..19397Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig950 19221..19397 -
1697105160.8419368-CDS-S-firma_M_contig950:19220..193971697105160.8419368-CDS-S-firma_M_contig950:19220..19397Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig950 19221..19397 -
1622828784.5838425-CDS-S-firma_M_contig950:19923..200281622828784.5838425-CDS-S-firma_M_contig950:19923..20028Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig950 19924..20028 -
1697105160.8519065-CDS-S-firma_M_contig950:19923..200281697105160.8519065-CDS-S-firma_M_contig950:19923..20028Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig950 19924..20028 -
1622828784.5967014-CDS-S-firma_M_contig950:20512..207581622828784.5967014-CDS-S-firma_M_contig950:20512..20758Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig950 20513..20758 -
1697105160.8617513-CDS-S-firma_M_contig950:20512..207581697105160.8617513-CDS-S-firma_M_contig950:20512..20758Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig950 20513..20758 -
1622828784.6106687-CDS-S-firma_M_contig950:21372..214171622828784.6106687-CDS-S-firma_M_contig950:21372..21417Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig950 21373..21417 -
1697105160.8717482-CDS-S-firma_M_contig950:21372..214171697105160.8717482-CDS-S-firma_M_contig950:21372..21417Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig950 21373..21417 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig950.20488.1prot_S-firma_M_contig950.20488.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig950 18394..21417 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig950.20488.1

>prot_S-firma_M_contig950.20488.1 ID=prot_S-firma_M_contig950.20488.1|Name=mRNA_S-firma_M_contig950.20488.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=334bp
MYCLNPPLKRAPKGDWLCPNCAKKVLAAADSEEAESSSAEAKGAANGKGK
ASAASTAAAAAAAAAAKAEAARKEQEREELRLAALAVLNESSEDPGNETA
NGVEGDGDGDDDDEGEETESETETEASRSDAEAEEGADDEEEEEEDICLI
CGQDGDPSTFLHCYECSGGAGGIGVYHRSCIKAPPDTVDGEWLCPRCVTK
KRKSGGGKSPAGKKKAKGGGAAATPSAGKKKAKEDHGGAAAAAASKKRKA
PAGEGGGGASGSSAAGAADGLDSAKKAKWEWSESQEALLLAAVKKVGAGK
WRQMVEDPAFDFEGKPGKALGSKWRSLSKRAPG*
back to top

mRNA from alignment at S-firma_M_contig950:17891..21718-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig950.20488.1 ID=mRNA_S-firma_M_contig950.20488.1|Name=mRNA_S-firma_M_contig950.20488.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=3828bp|location=Sequence derived from alignment at S-firma_M_contig950:17891..21718- (Sphaerotrichia firma Sfir_13m male)
GGGCGGGGCCGCCAAGGACGGAAAGGGTAAGAAGAAGGCGAAGCAGGAGA
AGGGCGAGGACGGAGAAGAAGAAGGGCGAGAGAAGGGAGCAGGCAAGGGA
AGCAAGGGAGGTAAAGGAGGGGCGGCGAAGAAGAAGGATCAGGGGAAGGG
CAAGAGCGGCGGGAAGGACGACGACGAGGAGGAACAGGAGGAGTCTTCAT
CGGGCGAGGAGGAAGAGGAGGATGCACCGTGTCTGGTGTGCGGCGGGCTG
GACAACCCCAACAAGGCCCTGCTCTGCGACGGCTGCGACGGCTGCTACCA
CATGTACTGCCTCAACCCTCCGCTCAAGCGCGCGCCCAAGGGAGATGTGA
GTTTTTTTTTTTTTGGGGGGGGGGGGGGGTATTTTTTCCATTTGAGGACA
GAGGAAAGGGGACATGTGACAGACACATCGTTCGCCTTCCGCTGCGCACA
TTTAATCCTACGGTGAAGGGTGGTGTGTGTCGGGAATTTGCGCAGGCCCA
ACCGGCAGCACGGTAAGTGTAACGCATCTACGCGATACTTTTACGGCCGT
GGCCTTCTTGGCGTTCCCTTGGCCGTCATGGAGAAGGCGTAAGTTTATCG
CGCTGCAATGTCTCTACAAGTGTGATGCAGCTGGCTGACTCTCTTCCGCG
GCACGTGCCGGGACAATGATAGGTATCCGTTTCTGATGTTCATGACGCGT
GTCCCCCGACGGTTCTCGCCCGGCGGCAGCACAAGTTTCGCGCCTTTTTG
TTGTTGTTGGCCAGCGTTGATGCGCGTCATCACTCTCGCCCAACTGCACC
TAGCCCATGCATGCTTTGGTCCTAATCGTCGCTCTCGTCGTCCCGTTGGA
ACGCCCCTCACGCCTGTCTTCCCTCCTTCCTTCCTTCCTTCCTTCCTTCC
TTCCCCTCCCTTGACTACAATACGTCACGCACACAAATGCACGGCGCAAA
AAACAAAAAGTGGCTGTGCCCCAACTGCGCGAAGAAGGTCCTTGCCGCCG
CCGATAGCGAAGAGGCGGAGAGTTCGTCCGCTGAGGCGAAGGGTGCAGCC
AACGGAAAGGGCAAAGCTTCTGCTGCTTCAACTGCGGCAGCGGCGGCGGC
GGCGGCAGCAGCCAAGGCGGAGGCGGCGAGAAAGGAGCAGGAGAGGGAAG
AACTGCGGCTCGCGGCGCTAGCGGTGCTGAACGAGTCTTCCGAGGATCCC
GGCAACGTGAGAGAGATAGATGGTGGTTAATGGTTTTTTGATTGCGCGAA
GAGTTGCTTGCAACAGCAGCAGAGACGGGCTTTGTTAAGCCAGGGCCGCT
CGAGCAGGTGCAGCTCCGATCGCAGAATGAAGCAGCGCCAGGAAGGCGTT
TTGTAGAAGTAGGGATGGGGTAGCAGGACGAAACTGTCCAAAGCCGCGGG
TGCCCCTGAAGCAACACGACCTCGTGCATCCTCAACGCACGCCTGTGCGT
TTTCCGCTTGAACAGCACCACGCTCGTGCTCTCTGTTCTCGCTCTGTCTC
TCTCCACGCCGTTCGTTGTTTGTTGCTCTGCCCCCTCCCCCGCTGCCGCC
ACGGCCGCCGCCACCCGCCGCGCTCTTCGCCCCCAAAACTCAAACCTCGC
GACACCGCCGTTTGCTGCTTCGAATACCGTCACCTGCTTCGGCCCTTCCC
GACCTGGTTCGTGACACCGTGGCATGACACGCACCTTCAGGAGACCGCGA
ACGGCGTCGAGGGGGATGGCGATGGCGATGACGATGACGAAGGAGAAGAG
ACGGAGTCGGAGACGGAGACGGAGGCATCCCGATCCGACGCGGAGGTGAG
AGGCCGGACAAGCGGGAGGGCTGCGATATCAAACGACGGGGAGCTCATGC
TACCGCCGGCCGTCCCCCCCCCCCATGTGCAAAAATCAAACGAGTGCGAT
GGGCGTGTGTCATCATGTTGCCTTGTCCAGGTGTCGTGTGTCGTGCACTT
TCTTGTTGAAAGCCCGCTTTTTATTTGTCGTGTTTTTCGTTTTTCGAGAG
TGCACTTTTCTAAGCCTCAGCTTTCATACTCTCCGGCGCTGCCGGCGCAC
GAGAGGAGAAGGGTCGGAAGCCAATGGCAGGTCTTTTGGGTGCCTCTCTC
AACAAGATCCACACATCAAGACCGCGTCAGCATCCATTTTTGCTGTTTTT
TGCCAACTATGTGCGCCACGCGCGCGAACTCGCCGCTCCCTCACCGTCCT
CCTGCTCGGGCGTTTTGTTGTTGCCTGCCGTCACCTAGACGTCGAAACGT
TTGGTAGCGAGAGGGGGCGGTGTGCTTGTCCTTGTCCAACACGTATGGTT
CTATTCTACCGCCTGACACAGGCGGAAGAGGGAGCGGACGACGAGGAAGA
GGAAGAGGAAGACATCTGCCTGATCTGCGGGCAGGATGGAGACCCTAGCA
CCTTCCTGCACTGCTACGAATGCTCGGGGGGCGCAGGCGGCATTGGAGTG
TACCATAGGAGCTGCATCAAGGCGCCCCCAGACACGGTCGACGGCGAGGT
GAGCCCTCGCGTGCCCGCTGCCCTGCCTGTGTTGTCAGCGTACTACGTAG
AGGGAGGTGCCCATTGCTCAAAAGCGAAGCATGCACAGCAAGTGGCGGTG
GTTCTCGTGTTCTCATCGGCCGATTCGGTGGACCTGTATCGAAGGCCTTC
GTGTACGAGACCCACAATTCTAGCACTACTCTGTTATGATTTACCGTGCG
CGACTTAGTGACCGGGCCTAGCTATCGGTGAGGTGACCTGTTGAGCAGCC
AGAGCCCCAGCCATTCCCGCGGAATGTTGATATTTTCATTCGCGTTACAT
GTACCCTTTGCATGCACACAGCAGTACCCCCGTTTCCGGTGAGCACTGTA
TCCCCACAATCCGGTCCAAATCTGCCCAAAATCCCCTTTTGAACAGTGGC
TGTGTCCGAGGTGCGTCACCAAGAAGCGTAAATCCGGAGGCGGCAAGTCA
CCAGCGGGGAAAAAGAAGGCCAAGGGAGGAGGCGCCGCCGCTACGCCATC
AGCCGGGAAAAAGAAGGCCAAGGAAGACCACGGTGGCGCCGCCGCCGCCG
CCGCGTCCAAGAAGCGGAAAGCGCCTGCCGGGGAGGGTGGCGGCGGCGCG
AGCGGTAGTTCGGCGGCGGGGGCGGCGGACGGCCTGGACAGCGCCAAGAA
GGCCAAGTGGGAGTGGTCAGAGAGCCAGGAGGCCTTGCTCCTCGCGGCGG
TCAAGAAGGTCGGCGCGGGCAAGTGGAGGCAGATGGTGGAGGACCCCGCC
TTCGACTTCGAGGGGAAGCCGGGCAAGGCACTCGGTAGCAAGTGGAGGTC
CTTGTCCAAGAGGGCTCCGGGCTGAACGCGAAGGGGAGAGAGGCGGGTTT
TCGTCTTTTGCTTTTAAGTAGTCGAATTTGCCGATCGGCGTACATTGGTT
TGTGGGATGGTCGGTTTTGGTGGTGGGGGAGTTTGGGGGGGAGAATGTAG
GGTTGGGGTTTGTGTTTTGTGTTTTGAGGCCGCGCGCAGTGTGACGTCGG
CGGTATAGAAGACCTCTGCCGCTCGGAAGTTACACCGACCGCAGTCAGGC
TCGTCGCGGATTTTAAGTTTGGGACGCCGGGGTGTACCGGTAGGCTGTTT
TGGTTGGACTCGGAGGCGTCCCAATTCCTTCTTGTAGGCATTGGTGTGGT
GATAGGGTGTGGTGGATAGTGTAGAACCGCCGGTAGGTCACGGCGTTTGT
AGGATGGGGCCGCATGTGCTCTCTATGATAGTTATTAGTTGGGTTCTGAG
ACAATGTGCCTCCGAAGTGGCGGCGCCGAACACAAGAGAAAGTTAGGGAT
TCCGACCTCGAGAGAAGAAAGCTTGGAA
back to top

Coding sequence (CDS) from alignment at S-firma_M_contig950:17891..21718-

>mRNA_S-firma_M_contig950.20488.1 ID=mRNA_S-firma_M_contig950.20488.1|Name=mRNA_S-firma_M_contig950.20488.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=2004bp|location=Sequence derived from alignment at S-firma_M_contig950:17891..21718- (Sphaerotrichia firma Sfir_13m male)
ATGTACTGCCTCAACCCTCCGCTCAAGCGCGCGCCCAAGGGAGATATGTA
CTGCCTCAACCCTCCGCTCAAGCGCGCGCCCAAGGGAGATTGGCTGTGCC
CCAACTGCGCGAAGAAGGTCCTTGCCGCCGCCGATAGCGAAGAGGCGGAG
AGTTCGTCCGCTGAGGCGAAGGGTGCAGCCAACGGAAAGGGCAAAGCTTC
TGCTGCTTCAACTGCGGCAGCGGCGGCGGCGGCGGCAGCAGCCAAGGCGG
AGGCGGCGAGAAAGGAGCAGGAGAGGGAAGAACTGCGGCTCGCGGCGCTA
GCGGTGCTGAACGAGTCTTCCGAGGATCCCGGCAACTGGCTGTGCCCCAA
CTGCGCGAAGAAGGTCCTTGCCGCCGCCGATAGCGAAGAGGCGGAGAGTT
CGTCCGCTGAGGCGAAGGGTGCAGCCAACGGAAAGGGCAAAGCTTCTGCT
GCTTCAACTGCGGCAGCGGCGGCGGCGGCGGCAGCAGCCAAGGCGGAGGC
GGCGAGAAAGGAGCAGGAGAGGGAAGAACTGCGGCTCGCGGCGCTAGCGG
TGCTGAACGAGTCTTCCGAGGATCCCGGCAACGAGACCGCGAACGGCGTC
GAGGGGGATGGCGATGGCGATGACGATGACGAAGGAGAAGAGACGGAGTC
GGAGACGGAGACGGAGGCATCCCGATCCGACGCGGAGGAGACCGCGAACG
GCGTCGAGGGGGATGGCGATGGCGATGACGATGACGAAGGAGAAGAGACG
GAGTCGGAGACGGAGACGGAGGCATCCCGATCCGACGCGGAGGCGGAAGA
GGGAGCGGACGACGAGGAAGAGGAAGAGGAAGACATCTGCCTGATCTGCG
GGCAGGATGGAGACCCTAGCACCTTCCTGCACTGCTACGAATGCTCGGGG
GGCGCAGGCGGCATTGGAGTGTACCATAGGAGCTGCATCAAGGCGCCCCC
AGACACGGTCGACGGCGAGGCGGAAGAGGGAGCGGACGACGAGGAAGAGG
AAGAGGAAGACATCTGCCTGATCTGCGGGCAGGATGGAGACCCTAGCACC
TTCCTGCACTGCTACGAATGCTCGGGGGGCGCAGGCGGCATTGGAGTGTA
CCATAGGAGCTGCATCAAGGCGCCCCCAGACACGGTCGACGGCGAGTGGC
TGTGTCCGAGGTGCGTCACCAAGAAGCGTAAATCCGGAGGCGGCAAGTCA
CCAGCGGGGAAAAAGAAGGCCAAGGGAGGAGGCGCCGCCGCTACGCCATC
AGCCGGGAAAAAGAAGGCCAAGGAAGACCACGGTGGCGCCGCCGCCGCCG
CCGCGTCCAAGAAGCGGAAAGCGCCTGCCGGGGAGGGTGGCGGCGGCGCG
AGCGGTAGTTCGGCGGCGGGGGCGGCGGACGGCCTGGACAGCGCCAAGAA
GGCCAAGTGGGAGTGGTCAGAGAGCCAGGAGGCCTTGCTCCTCGCGGCGG
TCAAGAAGGTCGGCGCGGGCAAGTGGAGGCAGATGGTGGAGGACCCCGCC
TTCGACTTCGAGGGGAAGCCGGGCAAGGCACTCGGTAGCAAGTGGAGGTC
CTTGTCCAAGAGGGCTCCGGGCTGATGGCTGTGTCCGAGGTGCGTCACCA
AGAAGCGTAAATCCGGAGGCGGCAAGTCACCAGCGGGGAAAAAGAAGGCC
AAGGGAGGAGGCGCCGCCGCTACGCCATCAGCCGGGAAAAAGAAGGCCAA
GGAAGACCACGGTGGCGCCGCCGCCGCCGCCGCGTCCAAGAAGCGGAAAG
CGCCTGCCGGGGAGGGTGGCGGCGGCGCGAGCGGTAGTTCGGCGGCGGGG
GCGGCGGACGGCCTGGACAGCGCCAAGAAGGCCAAGTGGGAGTGGTCAGA
GAGCCAGGAGGCCTTGCTCCTCGCGGCGGTCAAGAAGGTCGGCGCGGGCA
AGTGGAGGCAGATGGTGGAGGACCCCGCCTTCGACTTCGAGGGGAAGCCG
GGCAAGGCACTCGGTAGCAAGTGGAGGTCCTTGTCCAAGAGGGCTCCGGG
CTGA
back to top