prot_S-firma_M_contig9486.20472.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig9486.20472.1
Unique Nameprot_S-firma_M_contig9486.20472.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length154
Homology
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BLAST of mRNA_S-firma_M_contig9486.20472.1 vs. uniprot
Match: D7FU50_ECTSI (CBF domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU50_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 3.710e-28
Identity = 59/72 (81.94%), Postives = 66/72 (91.67%), Query Frame = 0 
Query:   22 MAESKQRVRVLRQVEHGVLSKVENANGIVTLLKELGRDNEPSVAVAATHCLRRIFTQLLNPAKNPQLPRPAP 93
            M E K+R+RVLRQVE+GVLS VENANGIV+LLKELGR+ E SVAVAA HCLRRIFTQLL+PAKNPQLPRP+P
Sbjct:    1 MTEVKERIRVLRQVEYGVLSNVENANGIVSLLKELGRETETSVAVAAAHCLRRIFTQLLDPAKNPQLPRPSP 72
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9486.20472.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FU50_ECTSI3.710e-2881.94CBF domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9486contigS-firma_M_contig9486:2354..3949 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9486.20472.1mRNA_S-firma_M_contig9486.20472.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig9486 2354..3951 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig9486.20472.1 ID=prot_S-firma_M_contig9486.20472.1|Name=mRNA_S-firma_M_contig9486.20472.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=154bp
ELHSHFRARGTGGQCTAGAHRMAESKQRVRVLRQVEHGVLSKVENANGIV
TLLKELGRDNEPSVAVAATHCLRRIFTQLLNPAKNPQLPRPAPAASSATT
TADTPGGTVGESRKKHKKKRARDEDGDSAGEDDDAGGGGGGSEGHAGASG
GDDE
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