mRNA_S-firma_M_contig9486.20472.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9486.20472.1
Unique NamemRNA_S-firma_M_contig9486.20472.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9486.20472.1 vs. uniprot
Match: D7FU50_ECTSI (CBF domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU50_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 3.710e-28
Identity = 59/72 (81.94%), Postives = 66/72 (91.67%), Query Frame = 1 
Query:   64 MAESKQRVRVLRQVEHGVLSKVENANGIVTLLKELGRDNEPSVAVAATHCLRRIFTQLLNPAKNPQLPRPAP 279
            M E K+R+RVLRQVE+GVLS VENANGIV+LLKELGR+ E SVAVAA HCLRRIFTQLL+PAKNPQLPRP+P
Sbjct:    1 MTEVKERIRVLRQVEYGVLSNVENANGIVSLLKELGRETETSVAVAAAHCLRRIFTQLLDPAKNPQLPRPSP 72
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9486.20472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FU50_ECTSI3.710e-2881.94CBF domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9486contigS-firma_M_contig9486:2354..3951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.4
Seed ortholog evalue1.5e-24
Seed eggNOG ortholog2880.D7FU50
Preferred nameNOC4L
KEGG koko:K12767,ko:K14771
KEGG Pathwayko04113,ko04138,ko04213,map04113,map04138,map04213
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0000981,GO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006357,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022613,GO:0030490,GO:0030684,GO:0030686,GO:0030688,GO:0030689,GO:0030692,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140110,GO:1901360,GO:1903506,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsKOG2154@1,KOG2154@2759
EC2.7.11.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03009
Hectar predicted targeting categoryother localisation
Exons3
Model size466
Cds size462
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9486.20472.1prot_S-firma_M_contig9486.20472.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9486 2354..3949 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828782.4029446-CDS-S-firma_M_contig9486:2353..24551622828782.4029446-CDS-S-firma_M_contig9486:2353..2455Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9486 2354..2455 +
1697105159.4549217-CDS-S-firma_M_contig9486:2353..24551697105159.4549217-CDS-S-firma_M_contig9486:2353..2455Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9486 2354..2455 +
1622828782.4178433-CDS-S-firma_M_contig9486:3154..33131622828782.4178433-CDS-S-firma_M_contig9486:3154..3313Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9486 3155..3313 +
1697105159.4705079-CDS-S-firma_M_contig9486:3154..33131697105159.4705079-CDS-S-firma_M_contig9486:3154..3313Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9486 3155..3313 +
1622828782.4329479-CDS-S-firma_M_contig9486:3748..39491622828782.4329479-CDS-S-firma_M_contig9486:3748..3949Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9486 3749..3949 +
1697105159.483236-CDS-S-firma_M_contig9486:3748..39491697105159.483236-CDS-S-firma_M_contig9486:3748..3949Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9486 3749..3949 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9486.20472.1

>prot_S-firma_M_contig9486.20472.1 ID=prot_S-firma_M_contig9486.20472.1|Name=mRNA_S-firma_M_contig9486.20472.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=154bp
ELHSHFRARGTGGQCTAGAHRMAESKQRVRVLRQVEHGVLSKVENANGIV
TLLKELGRDNEPSVAVAATHCLRRIFTQLLNPAKNPQLPRPAPAASSATT
TADTPGGTVGESRKKHKKKRARDEDGDSAGEDDDAGGGGGGSEGHAGASG
GDDE
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mRNA from alignment at S-firma_M_contig9486:2354..3951+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9486.20472.1 ID=mRNA_S-firma_M_contig9486.20472.1|Name=mRNA_S-firma_M_contig9486.20472.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1598bp|location=Sequence derived from alignment at S-firma_M_contig9486:2354..3951+ (Sphaerotrichia firma Sfir_13m male)
GAGCTTCACTCGCACTTTCGAGCCCGAGGAACGGGTGGACAGTGTACAGC
GGGCGCACACAGAATGGCGGAGTCGAAACAGCGTGTCCGCGTTCTACGCC
AGGCAAGTGGAGTGAGGTGAAGTGCTTTGTGGCCAAGCCAACCGTACCCA
ACCGCTAGCTCCAAGCTCCGAGGTGCTTTTGTCCACACAACTCCGAGCCA
TGTAGACGGCGGTAATTGCAGCAGCTGCAGCAGAGCCCCCAAACGCAGTG
AAAAGAGACCAAGCCCTTGGCTTATGCGCACCAAGGGGGGGGGGCAAGGT
GTAGAGTAAGCCAGCAGTTCTCGGCGTGCTGCCTGGCTACCTGTCTACTG
CGGTACGTGTCTGTCAACACGCGCAAATCAGGGCAGGGAAAATATCGTGC
GATGGTTGAGAGCAGACGCGACACGGCCCGTAGGCTATGCCCTATACAAC
AAGCAGCAAGTTGATCGACTCACTGGTGCAGCACCGGTCCCACGTAGAGG
AAGGACCTCTAAAGTATGGTAAACAGGTTCCAGGATTTGGTAGTGTAGTT
GATGTGTTCCTCATGCTTTCGGCCTTACAGCAGTACGTTGGCGATGAGTC
TGCTGCTGCGGCAGTACTACTGCTGTAGCTGCTCCTGCGGCGGGACATGC
CGTGAGAGTATTTCGGGCTCCCAAAGACTCCTGTGACCGGGTGCCCTCCT
CCCGACTGCCACCACTGACGAAATACACTCACCACCGCCGCCGCCCACAA
CTTCCGTGCCCCCTCCTGCTGGTTGGGTCACCAAAACCAAACAAACCACA
GGTAGAGCACGGCGTGCTGTCCAAGGTGGAAAATGCGAACGGCATCGTGA
CCCTCCTCAAGGAGCTCGGCCGCGACAACGAGCCGTCCGTGGCGGTGGCG
GCGACCCACTGCCTCCGGAGGATCTTCACCCAGCTCTTGAACCCCGCGAA
GAATCCGCAGGTGTGTAGGGGGCCCGCTGAATGCCTGCAGAACTGGAGTA
TACTTGTATTCGAAGTACCGTGAGTGTTCGGGTCAAGTGTACCACCACAT
CGTTCTCGCACCCGTCGGGGTCATGGCACCGAGGTGTGACGAAACAACCC
TGTTTAGTTGGAGGTGATTTAAAATAAAAAATCGCACCGGGGTGCACGGA
CCCGAACATATTCGGTGTGTTTGGACGCGATTGCATACATGCTGGTGGTG
GGGGGTCGATTTTTTTGGTCGGCTTGAGTCGTCTTCGCGGGTGGGGATTT
CGCGCAGACTCGGGGAGGCCTGCTGACGTGACGTAAGCAGTCAGTCGCGT
TGCCGCGGTCGAAACGAAAAAAAAGGAGCTTAGCTACCGTATGTATAAAT
ACCCTACTCCTCGCTTTCCTGCGTCTGTGTTTGCCGGCCGCACAGCTTCC
CCGGCCAGCGCCGGCGGCCTCCTCTGCCACGACGACCGCCGACACCCCCG
GCGGCACCGTGGGCGAGAGCAGGAAGAAGCACAAGAAGAAGCGCGCCCGC
GACGAGGACGGCGATAGCGCCGGTGAGGACGACGATGCTGGTGGGGGCGG
CGGCGGCTCGGAAGGCCATGCGGGGGCCAGCGGCGGCGACGACGAAAG
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Coding sequence (CDS) from alignment at S-firma_M_contig9486:2354..3951+

>mRNA_S-firma_M_contig9486.20472.1 ID=mRNA_S-firma_M_contig9486.20472.1|Name=mRNA_S-firma_M_contig9486.20472.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=924bp|location=Sequence derived from alignment at S-firma_M_contig9486:2354..3951+ (Sphaerotrichia firma Sfir_13m male)
GAGCTTCACTCGCACTTTCGAGCCCGAGGAACGGGTGGACAGTGTACAGC
GGGCGCACACAGAATGGCGGAGTCGAAACAGCGTGTCCGCGTTCTACGCC
AGGAGCTTCACTCGCACTTTCGAGCCCGAGGAACGGGTGGACAGTGTACA
GCGGGCGCACACAGAATGGCGGAGTCGAAACAGCGTGTCCGCGTTCTACG
CCAGGTAGAGCACGGCGTGCTGTCCAAGGTGGAAAATGCGAACGGCATCG
TGACCCTCCTCAAGGAGCTCGGCCGCGACAACGAGCCGTCCGTGGCGGTG
GCGGCGACCCACTGCCTCCGGAGGATCTTCACCCAGCTCTTGAACCCCGC
GAAGAATCCGCAGGTAGAGCACGGCGTGCTGTCCAAGGTGGAAAATGCGA
ACGGCATCGTGACCCTCCTCAAGGAGCTCGGCCGCGACAACGAGCCGTCC
GTGGCGGTGGCGGCGACCCACTGCCTCCGGAGGATCTTCACCCAGCTCTT
GAACCCCGCGAAGAATCCGCAGCTTCCCCGGCCAGCGCCGGCGGCCTCCT
CTGCCACGACGACCGCCGACACCCCCGGCGGCACCGTGGGCGAGAGCAGG
AAGAAGCACAAGAAGAAGCGCGCCCGCGACGAGGACGGCGATAGCGCCGG
TGAGGACGACGATGCTGGTGGGGGCGGCGGCGGCTCGGAAGGCCATGCGG
GGGCCAGCGGCGGCGACGACGAACTTCCCCGGCCAGCGCCGGCGGCCTCC
TCTGCCACGACGACCGCCGACACCCCCGGCGGCACCGTGGGCGAGAGCAG
GAAGAAGCACAAGAAGAAGCGCGCCCGCGACGAGGACGGCGATAGCGCCG
GTGAGGACGACGATGCTGGTGGGGGCGGCGGCGGCTCGGAAGGCCATGCG
GGGGCCAGCGGCGGCGACGACGAA
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