prot_S-firma_M_contig9485.20469.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig9485.20469.1
Unique Nameprot_S-firma_M_contig9485.20469.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length91
Homology
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BLAST of mRNA_S-firma_M_contig9485.20469.1 vs. uniprot
Match: A0A6H5JJU2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJU2_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 2.340e-36
Identity = 75/86 (87.21%), Postives = 76/86 (88.37%), Query Frame = 0 
Query:    6 EVGGGARQAVTTLLPKLVPAVTACLEGSVSADGASSVPPPAAVAAGALGVLEALVFLLRSTMRPHVKKVETATALWLQGPSDVIRD 91
            E  G  RQAV  LLPKLVPAVTACLEGS SADGASS+PPP AVAAGALGVLEALVFLLRSTMRPHVKKVE ATA WLQGPSDVIRD
Sbjct:  218 EAEGVGRQAVIALLPKLVPAVTACLEGSTSADGASSLPPPPAVAAGALGVLEALVFLLRSTMRPHVKKVEAATAPWLQGPSDVIRD 303
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BLAST of mRNA_S-firma_M_contig9485.20469.1 vs. uniprot
Match: D8LP19_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP19_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 1.590e-33
Identity = 69/80 (86.25%), Postives = 72/80 (90.00%), Query Frame = 0 
Query:   12 RQAVTTLLPKLVPAVTACLEGSVSADGASSVPPPAAVAAGALGVLEALVFLLRSTMRPHVKKVETATALWLQGPSDVIRD 91
             +AV  +LPKLVPAVTACLEGS SADG SS+PPP AVAAGALGVLEALVFLLRSTMRPHVKKVE ATA WLQGPSDVIRD
Sbjct:  145 NKAVIGVLPKLVPAVTACLEGSTSADGGSSLPPPPAVAAGALGVLEALVFLLRSTMRPHVKKVEAATAPWLQGPSDVIRD 224
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9485.20469.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJU2_9PHAE2.340e-3687.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LP19_ECTSI1.590e-3386.25Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..45
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 46..63
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 64..91
NoneNo IPR availableTMHMMTMhelixcoord: 41..63

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9485contigS-firma_M_contig9485:2742..3821 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9485.20469.1mRNA_S-firma_M_contig9485.20469.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig9485 2742..3821 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig9485.20469.1 ID=prot_S-firma_M_contig9485.20469.1|Name=mRNA_S-firma_M_contig9485.20469.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=91bp
VGGGVEVGGGARQAVTTLLPKLVPAVTACLEGSVSADGASSVPPPAAVAA
GALGVLEALVFLLRSTMRPHVKKVETATALWLQGPSDVIRD
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