mRNA_S-firma_M_contig9485.20469.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9485.20469.1
Unique NamemRNA_S-firma_M_contig9485.20469.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9485.20469.1 vs. uniprot
Match: A0A6H5JJU2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJU2_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 2.340e-36
Identity = 75/86 (87.21%), Postives = 76/86 (88.37%), Query Frame = 1 
Query:   16 EVGGGARQAVTTLLPKLVPAVTACLEGSVSADGASSVPPPAAVAAGALGVLEALVFLLRSTMRPHVKKVETATALWLQGPSDVIRD 273
            E  G  RQAV  LLPKLVPAVTACLEGS SADGASS+PPP AVAAGALGVLEALVFLLRSTMRPHVKKVE ATA WLQGPSDVIRD
Sbjct:  218 EAEGVGRQAVIALLPKLVPAVTACLEGSTSADGASSLPPPPAVAAGALGVLEALVFLLRSTMRPHVKKVEAATAPWLQGPSDVIRD 303
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BLAST of mRNA_S-firma_M_contig9485.20469.1 vs. uniprot
Match: D8LP19_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP19_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 1.590e-33
Identity = 69/80 (86.25%), Postives = 72/80 (90.00%), Query Frame = 1 
Query:   34 RQAVTTLLPKLVPAVTACLEGSVSADGASSVPPPAAVAAGALGVLEALVFLLRSTMRPHVKKVETATALWLQGPSDVIRD 273
             +AV  +LPKLVPAVTACLEGS SADG SS+PPP AVAAGALGVLEALVFLLRSTMRPHVKKVE ATA WLQGPSDVIRD
Sbjct:  145 NKAVIGVLPKLVPAVTACLEGSTSADGGSSLPPPPAVAAGALGVLEALVFLLRSTMRPHVKKVEAATAPWLQGPSDVIRD 224
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9485.20469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJU2_9PHAE2.340e-3687.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LP19_ECTSI1.590e-3386.25Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9485contigS-firma_M_contig9485:2742..3821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size274
Cds size273
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9485.20469.1prot_S-firma_M_contig9485.20469.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9485 2742..3821 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828782.2640436-CDS-S-firma_M_contig9485:2741..27801622828782.2640436-CDS-S-firma_M_contig9485:2741..2780Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9485 2742..2780 +
1697105159.3816817-CDS-S-firma_M_contig9485:2741..27801697105159.3816817-CDS-S-firma_M_contig9485:2741..2780Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9485 2742..2780 +
1622828782.2797205-CDS-S-firma_M_contig9485:3121..33311622828782.2797205-CDS-S-firma_M_contig9485:3121..3331Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9485 3122..3331 +
1697105159.389907-CDS-S-firma_M_contig9485:3121..33311697105159.389907-CDS-S-firma_M_contig9485:3121..3331Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9485 3122..3331 +
1622828782.2949934-CDS-S-firma_M_contig9485:3797..38211622828782.2949934-CDS-S-firma_M_contig9485:3797..3821Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9485 3798..3821 +
1697105159.3982747-CDS-S-firma_M_contig9485:3797..38211697105159.3982747-CDS-S-firma_M_contig9485:3797..3821Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9485 3798..3821 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9485.20469.1

>prot_S-firma_M_contig9485.20469.1 ID=prot_S-firma_M_contig9485.20469.1|Name=mRNA_S-firma_M_contig9485.20469.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=91bp
VGGGVEVGGGARQAVTTLLPKLVPAVTACLEGSVSADGASSVPPPAAVAA
GALGVLEALVFLLRSTMRPHVKKVETATALWLQGPSDVIRD
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mRNA from alignment at S-firma_M_contig9485:2742..3821+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9485.20469.1 ID=mRNA_S-firma_M_contig9485.20469.1|Name=mRNA_S-firma_M_contig9485.20469.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1080bp|location=Sequence derived from alignment at S-firma_M_contig9485:2742..3821+ (Sphaerotrichia firma Sfir_13m male)
GTCGGCGGAGGCGTGGAGGTCGGAGGAGGCGCGAGACAGGTTTGTCCCGT
GACATGGTGGCATGTCCCGTGACATGGTGGCATCGTAACCGGGGTTGTTT
GCTAGGTGCTGCTGTGTATCTGTGGCGTGCACCGGCAGGACAGGAACGGA
CACGTTAGCGTGAGAGGGCTGCTCTGCGTGTGGGGGTCTTGGAATGTGTC
ACGAGGCACTCGCGATGTTTGCGCTTGTTTTCGCAAGGATGGGATAACCC
CCCCCCGCCCCGCCCTCTCTCTCGCCTACGTGTCTCACTCGATGGCCTGC
CCCTCCCACCCCTCCACCCGCCGCTATCTTATGGCTGTACCCCTGTGTGT
GTCTCGACGGTGCCCCCCTATACACCCAAGGCGGTGACCACTCTTTTGCC
GAAGCTGGTGCCGGCGGTGACGGCATGCCTGGAGGGGTCCGTCAGCGCCG
ACGGGGCCTCCTCCGTGCCCCCGCCCGCCGCGGTGGCGGCCGGCGCCCTC
GGCGTGCTGGAGGCGCTCGTGTTCTTGCTGCGCTCGACGATGCGGCCCCA
CGTCAAGAAAGTCGAAACCGCGACCGCGCTGTGGCTGCAGGTGTGTGCGT
ATGTAGGTGTGTTGTAGTCTCGTGTGTGTGTGTGTGTTTTGTTTTTATTT
GCGAAGTCGGTGGATGGCACGATAGTACAATCTCCGGTGAACGACGTGTG
TGCTTGCACCAAAAAAGCATGACATGCCAACCTTGGCGAGTCAAGAACCA
AAACATTTCCCTCACGGGACGGAGGAGAAGGTTAGGGTGTGCGTGTGTGT
GTGTGTGCATGTTGGGGGGGGGGCTACGCCCGCTTGTGTGTTCGCGAAAG
ATACTTGCTTCTAGATCGGTGATGGGCGGAAGTTTTCCGCCTTGATCAGT
GTTGCGCGGGTGGCGTTGTTGAAGCCCCTAGCTGTAGCTGTCTATGCACC
TTTCCGTCGCCTTCTAGCGTCGCACGCGGCGAGAGGAACATGTCGAGATG
ACCACCCACCTCCGTTGTCGTTGCCCCCCTGGCCTCCGCGGCGGTGTATC
GTACAGGGGCCCAGCGACGTTATCCGTGAC
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Coding sequence (CDS) from alignment at S-firma_M_contig9485:2742..3821+

>mRNA_S-firma_M_contig9485.20469.1 ID=mRNA_S-firma_M_contig9485.20469.1|Name=mRNA_S-firma_M_contig9485.20469.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=546bp|location=Sequence derived from alignment at S-firma_M_contig9485:2742..3821+ (Sphaerotrichia firma Sfir_13m male)
GTCGGCGGAGGCGTGGAGGTCGGAGGAGGCGCGAGACAGGTCGGCGGAGG
CGTGGAGGTCGGAGGAGGCGCGAGACAGGCGGTGACCACTCTTTTGCCGA
AGCTGGTGCCGGCGGTGACGGCATGCCTGGAGGGGTCCGTCAGCGCCGAC
GGGGCCTCCTCCGTGCCCCCGCCCGCCGCGGTGGCGGCCGGCGCCCTCGG
CGTGCTGGAGGCGCTCGTGTTCTTGCTGCGCTCGACGATGCGGCCCCACG
TCAAGAAAGTCGAAACCGCGACCGCGCTGTGGCTGCAGGCGGTGACCACT
CTTTTGCCGAAGCTGGTGCCGGCGGTGACGGCATGCCTGGAGGGGTCCGT
CAGCGCCGACGGGGCCTCCTCCGTGCCCCCGCCCGCCGCGGTGGCGGCCG
GCGCCCTCGGCGTGCTGGAGGCGCTCGTGTTCTTGCTGCGCTCGACGATG
CGGCCCCACGTCAAGAAAGTCGAAACCGCGACCGCGCTGTGGCTGCAGGG
GCCCAGCGACGTTATCCGTGACGGGCCCAGCGACGTTATCCGTGAC
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