prot_S-firma_M_contig9477.20454.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig9477.20454.1
Unique Nameprot_S-firma_M_contig9477.20454.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length195
Homology
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BLAST of mRNA_S-firma_M_contig9477.20454.1 vs. uniprot
Match: A0A6H5JIX9_9PHAE (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIX9_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 2.900e-27
Identity = 62/95 (65.26%), Postives = 67/95 (70.53%), Query Frame = 0 
Query:   91 MMTLKPGPRXXXXXXXXXXXXXXXSGR--VKRRVARTTGFGHSNEDFKYVAAIKGGVVDFLEATEQSLSGELVTVVTYLPWCRSCHHVSYTRAVL 183
            MMTLK GPR               SGR  VK RV RTTGFG+S EDFKYVA IKGGVV FLEA +QSLSGELVTVVTY+PWCRSCHH+ +   VL
Sbjct:    1 MMTLKSGPRPTSGGASGSSSR---SGRDDVKPRVTRTTGFGNSAEDFKYVADIKGGVVGFLEAMDQSLSGELVTVVTYMPWCRSCHHLRHRLRVL 92
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BLAST of mRNA_S-firma_M_contig9477.20454.1 vs. uniprot
Match: D7FH47_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH47_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 3.570e-17
Identity = 74/168 (44.05%), Postives = 81/168 (48.21%), Query Frame = 0 
Query:    1 MMAAQSTTTAFALGVLALAPGXXXXXXXXXXX-----RRMGMVDAFVGQAPIRPLGRAAXXXXXXXXXXXXXXXXGYLGVPSESTNRAAFSSPPTMMTLKPGPRXXXXXXXXXXXXXXXSGR--VKRRVARTTGFGHSNEDFKYVAAIKGGVVDFLEATEQSLSGELV 161
            MMA QSTT AFALGVLALAPG                R +G+VDAFVGQ    P    A                  +G P E    A+ SS                           SGR  VK RV RTTGFG+S EDFKYVA IKGGVV FLEA +QSLSGEL+
Sbjct:    1 MMATQSTT-AFALGVLALAPGGANIDSRTGGGGSSSSRGVGLVDAFVGQ----PTTIRAGDGGSAEFSARRSGLHRCVGPPCEKLGGASGSS-------------------------SRSGRDGVKPRVTRTTGFGNSAEDFKYVADIKGGVVGFLEAMDQSLSGELL 138
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9477.20454.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JIX9_9PHAE2.900e-2765.26Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
D7FH47_ECTSI3.570e-1744.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..194
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..25
score: 0.57

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9477contigS-firma_M_contig9477:142..2685 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9477.20454.1mRNA_S-firma_M_contig9477.20454.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig9477 142..2990 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig9477.20454.1 ID=prot_S-firma_M_contig9477.20454.1|Name=mRNA_S-firma_M_contig9477.20454.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=195bp
MMAAQSTTTAFALGVLALAPGGGGGDGGGGGGRRMGMVDAFVGQAPIRPL
GRAAAAGAPPPPATRSARRRGYLGVPSESTNRAAFSSPPTMMTLKPGPRP
PTSSSSSSSSGGGGSGRVKRRVARTTGFGHSNEDFKYVAAIKGGVVDFLE
ATEQSLSGELVTVVTYLPWCRSCHHVSYTRAVLRIDAMALDSPI*
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