mRNA_S-firma_M_contig9477.20454.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_S-firma_M_contig9477.20454.1
Unique Name	mRNA_S-firma_M_contig9477.20454.1
Type	mRNA
Organism	Sphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)

Homology

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BLAST of mRNA_S-firma_M_contig9477.20454.1 vs. uniprot
Match: A0A6H5JIX9_9PHAE (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIX9_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 3.070e-26
Identity = 62/95 (65.26%), Postives = 67/95 (70.53%), Query Frame = 1

Query:  271 MMTLKPGPRXXXXXXXXXXXXXXXSGR--VKRRVARTTGFGHSNEDFKYVAAIKGGVVDFLEATEQSLSGELVTVVTYLPWCRSCHHVSYTRAVL 549
            MMTLK GPR               SGR  VK RV RTTGFG+S EDFKYVA IKGGVV FLEA +QSLSGELVTVVTY+PWCRSCHH+ +   VL
Sbjct:    1 MMTLKSGPRPTSGGASGSSSR---SGRDDVKPRVTRTTGFGNSAEDFKYVADIKGGVVGFLEAMDQSLSGELVTVVTYMPWCRSCHHLRHRLRVL 92

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BLAST of mRNA_S-firma_M_contig9477.20454.1 vs. uniprot
Match: D7FH47_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH47_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 3.200e-16
Identity = 74/168 (44.05%), Postives = 81/168 (48.21%), Query Frame = 1

Query:    1 MMAAQSTTTAFALGVLALAPGXXXXXXXXXXX-----RRMGMVDAFVGQAPIRPLGRAAXXXXXXXXXXXXXXXXGYLGVPSESTNRAAFSSPPTMMTLKPGPRXXXXXXXXXXXXXXXSGR--VKRRVARTTGFGHSNEDFKYVAAIKGGVVDFLEATEQSLSGELV 483
            MMA QSTT AFALGVLALAPG                R +G+VDAFVGQ    P    A                  +G P E    A+ SS                           SGR  VK RV RTTGFG+S EDFKYVA IKGGVV FLEA +QSLSGEL+
Sbjct:    1 MMATQSTT-AFALGVLALAPGGANIDSRTGGGGSSSSRGVGLVDAFVGQ----PTTIRAGDGGSAEFSARRSGLHRCVGPPCEKLGGASGSS-------------------------SRSGRDGVKPRVTRTTGFGNSAEDFKYVADIKGGVVGFLEAMDQSLSGELL 138

The following BLAST results are available for this feature:

BLAST of mRNA_S-firma_M_contig9477.20454.1 vs. uniprot

BLAST of mRNA_S-firma_M_contig9477.20454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JIX9_9PHAE	3.070e-26	65.26	Thioredoxin domain-containing protein n=1 Tax=Ecto...	[more]
D7FH47_ECTSI	3.200e-16	44.05	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-firma_M_contig9477	contig	S-firma_M_contig9477:142..2990 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90	2022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	signal peptide
Exons	4
Model size	890
Cds size	585
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_S-firma_M_contig9477.20454.1	prot_S-firma_M_contig9477.20454.1	Sphaerotrichia firma Sfir_13m male	polypeptide	S-firma_M_contig9477 142..2685 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622828780.8380005-CDS-S-firma_M_contig9477:141..380	1622828780.8380005-CDS-S-firma_M_contig9477:141..380	Sphaerotrichia firma Sfir_13m male	CDS	S-firma_M_contig9477 142..380 +
1697105158.4656677-CDS-S-firma_M_contig9477:141..380	1697105158.4656677-CDS-S-firma_M_contig9477:141..380	Sphaerotrichia firma Sfir_13m male	CDS	S-firma_M_contig9477 142..380 +
1622828780.8500235-CDS-S-firma_M_contig9477:1687..1782	1622828780.8500235-CDS-S-firma_M_contig9477:1687..1782	Sphaerotrichia firma Sfir_13m male	CDS	S-firma_M_contig9477 1688..1782 +
1697105158.4782403-CDS-S-firma_M_contig9477:1687..1782	1697105158.4782403-CDS-S-firma_M_contig9477:1687..1782	Sphaerotrichia firma Sfir_13m male	CDS	S-firma_M_contig9477 1688..1782 +
1622828780.861468-CDS-S-firma_M_contig9477:1824..1907	1622828780.861468-CDS-S-firma_M_contig9477:1824..1907	Sphaerotrichia firma Sfir_13m male	CDS	S-firma_M_contig9477 1825..1907 +
1697105158.494557-CDS-S-firma_M_contig9477:1824..1907	1697105158.494557-CDS-S-firma_M_contig9477:1824..1907	Sphaerotrichia firma Sfir_13m male	CDS	S-firma_M_contig9477 1825..1907 +
1622828780.873509-CDS-S-firma_M_contig9477:2517..2685	1622828780.873509-CDS-S-firma_M_contig9477:2517..2685	Sphaerotrichia firma Sfir_13m male	CDS	S-firma_M_contig9477 2518..2685 +
1697105158.5117695-CDS-S-firma_M_contig9477:2517..2685	1697105158.5117695-CDS-S-firma_M_contig9477:2517..2685	Sphaerotrichia firma Sfir_13m male	CDS	S-firma_M_contig9477 2518..2685 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622828780.8857381-UTR-S-firma_M_contig9477:2685..2990	1622828780.8857381-UTR-S-firma_M_contig9477:2685..2990	Sphaerotrichia firma Sfir_13m male	UTR	S-firma_M_contig9477 2686..2990 +
1697105158.5222015-UTR-S-firma_M_contig9477:2685..2990	1697105158.5222015-UTR-S-firma_M_contig9477:2685..2990	Sphaerotrichia firma Sfir_13m male	UTR	S-firma_M_contig9477 2686..2990 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at S-firma_M_contig9477:142..2990+
coding sequence from alignment at S-firma_M_contig9477:142..2990+

protein sequence of mRNA_S-firma_M_contig9477.20454.1

>prot_S-firma_M_contig9477.20454.1 ID=prot_S-firma_M_contig9477.20454.1|Name=mRNA_S-firma_M_contig9477.20454.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=195bp
MMAAQSTTTAFALGVLALAPGGGGGDGGGGGGRRMGMVDAFVGQAPIRPL
GRAAAAGAPPPPATRSARRRGYLGVPSESTNRAAFSSPPTMMTLKPGPRP
PTSSSSSSSSGGGGSGRVKRRVARTTGFGHSNEDFKYVAAIKGGVVDFLE
ATEQSLSGELVTVVTYLPWCRSCHHVSYTRAVLRIDAMALDSPI*

mRNA from alignment at S-firma_M_contig9477:142..2990+

Legend: polypeptideCDSUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_S-firma_M_contig9477.20454.1 ID=mRNA_S-firma_M_contig9477.20454.1|Name=mRNA_S-firma_M_contig9477.20454.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=2849bp|location=Sequence derived from alignment at S-firma_M_contig9477:142..2990+ (Sphaerotrichia firma Sfir_13m male)
ATGATGGCGGCACAATCGACCACCACGGCGTTCGCGCTGGGCGTGCTCGC
CCTAGCGCCCGGCGGCGGCGGCGGGGACGGGGGAGGCGGCGGGGGACGGA
GGATGGGAATGGTCGATGCCTTCGTGGGCCAGGCGCCGATTCGGCCGCTG
GGGCGGGCGGCGGCGGCGGGGGCGCCGCCGCCGCCGGCGACGAGAAGCGC
GCGCCGCAGGGGCTACCTCGGAGTGCCCTCGGAAAGCACGTGAGCTCTCT
GCCCGGGAGGGTCGCTTTGTTTGTGGGCATGTTTTTTTTTTTTTTTTTCT
CCGTTCTCCTCCCATTATGATAGTGTTTCTGTCGTGTGCCCCACTGGCCC
CCATCCTCTACCACGACTAGATAGCTAGACGACCCACCCGGGGTCACACA
GGAGGGGGGTATTGTGGTCATGTGTGGGTGGTGCTTTTGTTTTTTTGCTC
TCTTACTTGCGCCGGTGAGTCGGGCGGGAGGCTGACCCAGACCGGTCGCG
TAGGTGTGTGTGTGTGCTTCAAGTTCGGCTCACCTGACGGGAGGAAGAGC
GGGTGGTGGTTCGTTCGGTGCTGTGTGTTGTGCTGGGGGGGCAGGAACGA
GCTTGCGTTGAGAAAATAGAACACTCAAGTATGCACAACTTAGGGTAGAG
CAATGGTCTTTCTTGCAATGCATCTTCCCGCCAGGATCGCTCCCTCGTGC
GGCCTGTGAGAGCAGTACTTCCTCGTCCTGGTGTGTTGTGGGGATTCGGA
GCATTCCCGCGGCAGTTCAGCTTCCCGTGTGTCAACAGCAGCACTCCCGC
CTACATACGTTTGATCAATGCCTTGGAAGCGCTTCAATGAGGCAGGGGGC
GCGAAGCTTAACGCCCAAAACCTTGTACTCCTATCTTTAAAAATCACCCA
CGGTGTACGTAAAAGCATGCTTGGTCGAGCGCCACGCTTACCCCAAACAA
TGTTTGAAACAATGGCGTGTCTGTCTGGTGTGACACCCGCAGTCACCCTA
GAAAGTCCTTTCTCGAGAGCCACCCCTGCGAAGACGACGGCACTACGGCT
CGATCGGCCGGTTTAGGTCGGTACGTCGGTACTCTCCCTGTCCAGACGGT
ACCGAACCTTCCCTTGCCCAAACAACGCCTCCCCCCAAGAATGGAAACCC
CGAGTCGTCATGCGCGATGCTGAACAGCAGTACGCCTGGCCCTCCTTAAG
AGAACTCCAGAACCATATTTCACCACGGGTGGGACCTGACATTCCGAAGG
TGGCTGCGATGGCGCCGCCGCAGGCGACGTGGGTCATTCTCGAAGTTATC
GCTCCCTAGCGTCTTATCTCGTGTTTCGTGTTAGGAAGGTTGGTTGGTCA
GGAAGGTAGGCACACCTTGTGACTTCTTGGGCCCTTCTCCTCTTTGTCTC
CACAACCTTCGTCGCTTTTAGTCTGCCGCCCCCCCCCTCCATCTTGACGC
GACTCTCCCCCACCCCCCCCCCACCTACCCACCCGCGGTATTTGTTCGGG
GGCACGGTGAATGCGACAGGGGCACCTCCGCGGCATGGACCGGCAGCAAT
CGCGCCGCGTTTTCGTCTCCACCGACGATGATGACCCTCAAGCCCGGCCC
CCGCCCTCCTACGAGCAGCAGCAGCAGCAGCAGCAGTGGCGGTGGTGGTG
GTGGTAGTGGTGGTGGTGATAGCAAGCGCACAGGGGGCGGAAGCGGGAGG
GTGAAGCGTCGGGTGGCGCGAACGACCGGCTTCGGGCACAGCAACGAGGA
CTTCAAGTATGTGGCGGTGAGTCCAGAGCGTCCGTGTCGCGAGCATACAC
TGCTGCTGGACAATACCAGCCTGAAAATGTTTAAGAAGACGCGGTAAGCA
CAAGGACAAGAAGGCGAGACAGATGCGCCCTCTTTTGTTTTGCGAGAGAA
ATACCTGCAGATTGCTTTCAGACACCGCGAAAGATGCATCCTCTACTGTT
GAAAAAACGCGAGAGAAACACCTGTGGATTACTTTTTCGACACCGCGAAA
GATGCATCCTCTACTGCTGAAAAAACGCGAGAGAAACACCTGCAGATTGC
TTTCAGACACCGCGAAAGATGCATCCTCTACTGCTGAAAAAACGCGAGAG
AAACACCTGCAGATTGCTTTCAGACACCATGAAAGAAGCATCCTCTACTG
CTGAAAAAACGCGAGAGAAACACTTGCAGATTACTTTTCCGACAGCACGA
CCCCACCTCCGCAGCAGCAGCCCTCGCGGGCTCGACGATCTCTCGAAGCT
TGTTGACCGGCATGATGGATAGGTTTCATCGCTGGCCCGAACATTTTCAT
CCTCCTCCTCCTCCCCCTCCTCCTCCTATATTTTCGTTCTGGGGCACCAC
GATGCCGCCCTTAACTTCAACCGTAGGCCATCAAGGGAGGGGTCGTCGAT
TTCTTGGAGGCGACGGAGCAGTCCTTGTCCGGCGAGCTCGTTACGGTCGT
GACCTACCTGCCGTGGTGCCGATCTTGCCATCATGTGAGCTATACACGTG
CAGTACTTCGTATTGACGCCATGGCATTAGATTCTCCTATCTAGTTGCCT
AGTTGTTGCGTTTTGTCGAGGTTTGAGGGGGATTTGGTAGTTCGCTCGCC
AGCATGGGAGCTACATACGCACGATACCGTGGCATTAGATTCTTCTGGCT
GCTGCGTTTTGTCGAGGTTCGAGGAGGATTTGGTAGTTTTCTTGCCAGCA
TGGGAGCTGGTATTCGCTGCTTCTAGCTGTTGTGCTTTGTCGAGGTGTGA
GGAGGATTTGGTAGTTTTCTTGCCAGCATGGGAGCTGGTATTCGCTACTT
CTAGCGGTTGTCTGTCGAGGTTTTGAGGGAGGCAGGTAGTTTTCTTGAC

Coding sequence (CDS) from alignment at S-firma_M_contig9477:142..2990+

>mRNA_S-firma_M_contig9477.20454.1 ID=mRNA_S-firma_M_contig9477.20454.1|Name=mRNA_S-firma_M_contig9477.20454.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1170bp|location=Sequence derived from alignment at S-firma_M_contig9477:142..2990+ (Sphaerotrichia firma Sfir_13m male)
ATGATGGCGGCACAATCGACCACCACGGCGTTCGCGCTGGGCGTGCTCGC
CCTAGCGCCCGGCGGCGGCGGCGGGGACGGGGGAGGCGGCGGGGGACGGA
GGATGGGAATGGTCGATGCCTTCGTGGGCCAGGCGCCGATTCGGCCGCTG
GGGCGGGCGGCGGCGGCGGGGGCGCCGCCGCCGCCGGCGACGAGAAGCGC
GCGCCGCAGGGGCTACCTCGGAGTGCCCTCGGAAAGCACATGATGGCGGC
ACAATCGACCACCACGGCGTTCGCGCTGGGCGTGCTCGCCCTAGCGCCCG
GCGGCGGCGGCGGGGACGGGGGAGGCGGCGGGGGACGGAGGATGGGAATG
GTCGATGCCTTCGTGGGCCAGGCGCCGATTCGGCCGCTGGGGCGGGCGGC
GGCGGCGGGGGCGCCGCCGCCGCCGGCGACGAGAAGCGCGCGCCGCAGGG
GCTACCTCGGAGTGCCCTCGGAAAGCACCAATCGCGCCGCGTTTTCGTCT
CCACCGACGATGATGACCCTCAAGCCCGGCCCCCGCCCTCCTACGAGCAG
CAGCAGCAGCAGCAGCAGTGGCGCAATCGCGCCGCGTTTTCGTCTCCACC
GACGATGATGACCCTCAAGCCCGGCCCCCGCCCTCCTACGAGCAGCAGCA
GCAGCAGCAGCAGTGGCGGGGGCGGAAGCGGGAGGGTGAAGCGTCGGGTG
GCGCGAACGACCGGCTTCGGGCACAGCAACGAGGACTTCAAGTATGTGGC
GGGGGCGGAAGCGGGAGGGTGAAGCGTCGGGTGGCGCGAACGACCGGCTT
CGGGCACAGCAACGAGGACTTCAAGTATGTGGCGGCCATCAAGGGAGGGG
TCGTCGATTTCTTGGAGGCGACGGAGCAGTCCTTGTCCGGCGAGCTCGTT
ACGGTCGTGACCTACCTGCCGTGGTGCCGATCTTGCCATCATGTGAGCTA
TACACGTGCAGTACTTCGTATTGACGCCATGGCATTAGATTCTCCTATCT
AGGCCATCAAGGGAGGGGTCGTCGATTTCTTGGAGGCGACGGAGCAGTCC
TTGTCCGGCGAGCTCGTTACGGTCGTGACCTACCTGCCGTGGTGCCGATC
TTGCCATCATGTGAGCTATACACGTGCAGTACTTCGTATTGACGCCATGG
CATTAGATTCTCCTATCTAG