prot_S-firma_M_contig946.20442.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig946.20442.1
Unique Nameprot_S-firma_M_contig946.20442.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length611
Homology
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BLAST of mRNA_S-firma_M_contig946.20442.1 vs. uniprot
Match: A0A6H5JTB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB3_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 2.440e-45
Identity = 190/349 (54.44%), Postives = 209/349 (59.89%), Query Frame = 0 
Query:    1 MRSLQVLDLTSNALQGHIPESLGGMTDLRELWLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--KIQPRTFSALSSSLVYLNLSHNAFEGALPLAALSPLSAGETASSSRGSDSGTTSEEQ-RSRRERRGEVAAGMMVFSSLSYVNLSNNKFAGLVSRRVGELTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGLSGWLDGANGEAFGRLTLLETLRLDGNTFEGTVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSLRLEENPSLQGPIPAPLASRPECAVRADELVVEDTEATMLGSKLDAWFLMPRKAR 346
            M+S         ALQGHIPESLG MT+LRELWLG     XXXXXXXXXXXXXXXXXXXX       KI P   S LSSSLVYLNL HNAFEG LP++ LS  SAG      RGS SG+ S+ Q R+ R +R E AA ++  S LSY+NL +NKF G V   +G LT  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       +G +G   GRL+ LE LRLDGNTF G VP                                                         RSLRLEENPSL+GPIP  LAS   C VRAD+ V+EDTEA MLGSKLD WFLMPRKAR
Sbjct:  315 MQSXXXXXXXXXALQGHIPESLGEMTNLRELWLGRRENQXXXXXXXXXXXXXXXXXXXXSRNKALWKIHPHILSTLSSSLVYLNLGHNAFEGDLPVSPLSSHSAGGRVR--RGSRSGSQSDGQGRNSRRKRSESAAAVVSASPLSYLNLCHNKFTGHVPEEIGSLTSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGDDGGGLGRLSSLEILRLDGNTFHGIVPAALGNLARLEVLHLQLDRLWALAVRDNNLSGRVPESLGCLTGL--------------RSLRLEENPSLRGPIPDQLASGVNCNVRADQPVLEDTEAAMLGSKLDEWFLMPRKAR 647
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BLAST of mRNA_S-firma_M_contig946.20442.1 vs. uniprot
Match: D7FPI3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI3_ECTSI)

HSP 1 Score: 176 bits (446), Expect = 1.360e-44
Identity = 211/283 (74.56%), Postives = 227/283 (80.21%), Query Frame = 0 
Query:   65 KIQPRTFSALSSSLVYLNLSHNAFEGALPLAALSPLSAGETASSSRGSDSGTTSEEQ-RSRRERRGEVAAGMMVFSSLSYVNLSNNKFAGLVSRRVGELTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGLSGWLDGANGEAFGRLTLLETLRLDGNTFEGTVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSLRLEENPSLQGPIPAPLASRPECAVRADELVVEDTEATMLGSKLDAWFLMPRKAR 346
            KI P   SALSSSLVYLNL HNAFEG LP++ LSP SAG      RGS SG+ SE Q RS R RR E AAG++  S LSY+NL +NKF G VS  +G LT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   SG L+G +G   GRL+ LETLRLDGNTF G VP  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   RLEENPSL+GPIP  LAS   C VRAD+ V++DTEATMLGS+LD WFLMPRKAR
Sbjct:  242 KIHPHVLSALSSSLVYLNLGHNAFEGDLPVSPLSPHSAGGRVR--RGSTSGSPSEGQGRSSRRRRSESAAGVVSASPLSYLNLCHNKFTGRVSEEIGSLTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGILEGDDGGGLGRLSSLETLRLDGNTFHGIVPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLEENPSLRGPIPDQLASGVNCNVRADQPVLDDTEATMLGSRLDEWFLMPRKAR 522
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig946.20442.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTB3_9PHAE2.440e-4554.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPI3_ECTSI1.360e-4474.56Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00019LEURICHRPTcoord: 162..175
score: 56.2
coord: 52..65
score: 47.73
NoneNo IPR availablePANTHERPTHR46662:SF10coord: 140..307
NoneNo IPR availablePANTHERPTHR46662:SF10coord: 2..201
NoneNo IPR availablePANTHERPTHR46662FAMILY NOT NAMEDcoord: 140..307
NoneNo IPR availablePANTHERPTHR46662FAMILY NOT NAMEDcoord: 2..201
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 2..305
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 238..262
e-value: 90.0
score: 5.4
coord: 214..237
e-value: 130.0
score: 4.2
coord: 49..73
e-value: 34.0
score: 8.9
coord: 1..24
e-value: 53.0
score: 7.3
coord: 25..48
e-value: 74.0
score: 6.1
coord: 162..186
e-value: 8.1
score: 14.0
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..121
e-value: 6.2E-26
score: 92.9
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 128..332
e-value: 9.1E-46
score: 158.2
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 217..275
e-value: 1.1E-6
score: 28.3
coord: 2..62
e-value: 2.9E-10
score: 39.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig946contigS-firma_M_contig946:3848..9477 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig946.20442.1mRNA_S-firma_M_contig946.20442.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig946 2176..9477 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig946.20442.1 ID=prot_S-firma_M_contig946.20442.1|Name=mRNA_S-firma_M_contig946.20442.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=611bp
MRSLQVLDLTSNALQGHIPESLGGMTDLRELWLGGNNFVGVIPETLSKLD
DLQSLDLSRNKFAGKIQPRTFSALSSSLVYLNLSHNAFEGALPLAALSPL
SAGETASSSRGSDSGTTSEEQRSRRERRGEVAAGMMVFSSLSYVNLSNNK
FAGLVSRRVGELTSLDTLDLSCNKLEGEVPPDIGNCVALRVLSLSRCGLS
GWLDGANGEAFGRLTLLETLRLDGNTFEGTVPASFGKLTRLEVLQLQCNC
FNGQLPSTLGRLERLWAFTVRDNNLSGRVPDSLGRLTRLRSLRLEENPSL
QGPIPAPLASRPECAVRADELVVEDTEATMLGSKLDAWFLMPRKARETAS
YSTSRILGSAFLNLQEFPGYTSVRPSLLRHVSTVVPYECHIFTGVKGHRL
VVRRKEIAFLSHCWDLPPDQCPPKPDLLGGPHPDTPDRTKLRHMKACLRE
APEAVRYVWLDMLCVPLAESKRRRAAGRSVPFFVQNSGRFYVVAPDSPSL
ERHKKRAWCRLEALCAACPYQPCQLESAFSTKPAWNSAAARFVYDAVEFF
VSTWEKGNRYEERLTGRDELEAGGFLRDPVIGKVLSDPKDRQDIAEATLG
AVNAMEVAGRI
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf
IPR003591Leu-rich_rpt_typical-subtyp