prot_S-firma_M_contig944.20422.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig944.20422.1
Unique Nameprot_S-firma_M_contig944.20422.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length377
Homology
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BLAST of mRNA_S-firma_M_contig944.20422.1 vs. uniprot
Match: D7FLV1_ECTSI (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV1_ECTSI)

HSP 1 Score: 344 bits (882), Expect = 8.390e-114
Identity = 181/221 (81.90%), Postives = 201/221 (90.95%), Query Frame = 0 
Query:    1 MRGPSNKSVAVVAVTASAGCLSVGYWLIRRFRRRLNQSKALRVGGVSRPDAATLTAGDYVRLRGTVAAGARVLESPMKGVSCVAYRVNVVRVVDSRTAKKKASVTGMWGVLGGLASVIPWLCSFATTAQVDTEKWDTVYQAISSRGETVEIFLDESEANAISSLEAVA---TGKRRPRVRVDLAGAEFFSMEEVASEFEPEKVTGQASSRTQLGYRTTEEV 218
            MRGPSNKSVAV+AVTAS G LS+GY+L+RRFRRRLNQSKALR G VSRPDAA+L  GDYVR+RGTV+AGAR L+SPMK V+CV+YRVNVVRVVDSRTAKKKASV G+WGVLGG+ASV+PWLCSFA TAQVDTEKWDTVYQAISSRGETV+IFLD+ ++  I+ LEAVA   TGKRRPRVRVDLAGAEFFSME+VASEFE EK TG+ SSRTQLGYRTTEEV
Sbjct:    1 MRGPSNKSVAVLAVTASTGSLSLGYFLVRRFRRRLNQSKALRAGRVSRPDAASLAVGDYVRVRGTVSAGARTLQSPMKRVACVSYRVNVVRVVDSRTAKKKASVGGIWGVLGGIASVVPWLCSFAATAQVDTEKWDTVYQAISSRGETVQIFLDDHDS--IADLEAVAQAGTGKRRPRVRVDLAGAEFFSMEQVASEFEAEKATGKVSSRTQLGYRTTEEV 219
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig944.20422.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLV1_ECTSI8.390e-11481.90RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 281..376
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 263..280
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..28
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 237..257
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 258..262
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 29..236
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..20
score: 6.0
NoneNo IPR availableTMHMMTMhelixcoord: 10..28
NoneNo IPR availableTMHMMTMhelixcoord: 106..128

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig944contigS-firma_M_contig944:3044..5523 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig944.20422.1mRNA_S-firma_M_contig944.20422.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig944 2873..5564 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig944.20422.1 ID=prot_S-firma_M_contig944.20422.1|Name=mRNA_S-firma_M_contig944.20422.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=377bp
MRGPSNKSVAVVAVTASAGCLSVGYWLIRRFRRRLNQSKALRVGGVSRPD
AATLTAGDYVRLRGTVAAGARVLESPMKGVSCVAYRVNVVRVVDSRTAKK
KASVTGMWGVLGGLASVIPWLCSFATTAQVDTEKWDTVYQAISSRGETVE
IFLDESEANAISSLEAVATGKRRPRVRVDLAGAEFFSMEEVASEFEPEKV
TGQASSRTQLGYRTTEEVRVRLWDRAVVRRPQRLTRFSVLCTDLQSVLPI
AVAALVFRSPRVALAKLVFASATFAVHVASKGKPHRACILSCFKNIAIAS
KQATTQEVAIKSLPTHTFLLQKYRQREQASHTQEVAIKSLPTPRAVQIVD
RTLGKKPPMGRNPFNGRAKSWAVGQG*
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