mRNA_S-firma_M_contig944.20422.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig944.20422.1
Unique NamemRNA_S-firma_M_contig944.20422.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig944.20422.1 vs. uniprot
Match: D7FLV1_ECTSI (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV1_ECTSI)

HSP 1 Score: 344 bits (883), Expect = 6.650e-113
Identity = 181/221 (81.90%), Postives = 201/221 (90.95%), Query Frame = 3 
Query:   42 MRGPSNKSVAVVAVTASAGCLSVGYWLIRRFRRRLNQSKALRVGGVSRPDAATLTAGDYVRLRGTVAAGARVLESPMKGVSCVAYRVNVVRVVDSRTAKKKASVTGMWGVLGGLASVIPWLCSFATTAQVDTEKWDTVYQAISSRGETVEIFLDESEANAISSLEAVA---TGKRRPRVRVDLAGAEFFSMEEVASEFEPEKVTGQASSRTQLGYRTTEEV 695
            MRGPSNKSVAV+AVTAS G LS+GY+L+RRFRRRLNQSKALR G VSRPDAA+L  GDYVR+RGTV+AGAR L+SPMK V+CV+YRVNVVRVVDSRTAKKKASV G+WGVLGG+ASV+PWLCSFA TAQVDTEKWDTVYQAISSRGETV+IFLD+ ++  I+ LEAVA   TGKRRPRVRVDLAGAEFFSME+VASEFE EK TG+ SSRTQLGYRTTEEV
Sbjct:    1 MRGPSNKSVAVLAVTASTGSLSLGYFLVRRFRRRLNQSKALRAGRVSRPDAASLAVGDYVRVRGTVSAGARTLQSPMKRVACVSYRVNVVRVVDSRTAKKKASVGGIWGVLGGIASVVPWLCSFAATAQVDTEKWDTVYQAISSRGETVQIFLDDHDS--IADLEAVAQAGTGKRRPRVRVDLAGAEFFSMEQVASEFEAEKATGKVSSRTQLGYRTTEEV 219
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig944.20422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLV1_ECTSI6.650e-11381.90RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig944contigS-firma_M_contig944:2873..5564 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMitochondrial ubiquitin ligase activator of NFKB 1
Ec32 orthologEc-26_001140.1
Exons5
Model size1343
Cds size1131
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828777.1009827-UTR-S-firma_M_contig944:2872..30431622828777.1009827-UTR-S-firma_M_contig944:2872..3043Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig944 2873..3043 -
1697105155.939054-UTR-S-firma_M_contig944:2872..30431697105155.939054-UTR-S-firma_M_contig944:2872..3043Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig944 2873..3043 -
1622828777.1790416-UTR-S-firma_M_contig944:5523..55641622828777.1790416-UTR-S-firma_M_contig944:5523..5564Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig944 5524..5564 -
1697105156.0041127-UTR-S-firma_M_contig944:5523..55641697105156.0041127-UTR-S-firma_M_contig944:5523..5564Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig944 5524..5564 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828777.1133943-CDS-S-firma_M_contig944:3043..31721622828777.1133943-CDS-S-firma_M_contig944:3043..3172Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig944 3044..3172 -
1697105155.950701-CDS-S-firma_M_contig944:3043..31721697105155.950701-CDS-S-firma_M_contig944:3043..3172Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig944 3044..3172 -
1622828777.1250741-CDS-S-firma_M_contig944:3254..38691622828777.1250741-CDS-S-firma_M_contig944:3254..3869Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig944 3255..3869 -
1697105155.9622104-CDS-S-firma_M_contig944:3254..38691697105155.9622104-CDS-S-firma_M_contig944:3254..3869Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig944 3255..3869 -
1622828777.137999-CDS-S-firma_M_contig944:4169..42531622828777.137999-CDS-S-firma_M_contig944:4169..4253Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig944 4170..4253 -
1697105155.9728734-CDS-S-firma_M_contig944:4169..42531697105155.9728734-CDS-S-firma_M_contig944:4169..4253Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig944 4170..4253 -
1622828777.1513417-CDS-S-firma_M_contig944:4644..48581622828777.1513417-CDS-S-firma_M_contig944:4644..4858Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig944 4645..4858 -
1697105155.9835372-CDS-S-firma_M_contig944:4644..48581697105155.9835372-CDS-S-firma_M_contig944:4644..4858Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig944 4645..4858 -
1622828777.1636338-CDS-S-firma_M_contig944:5434..55231622828777.1636338-CDS-S-firma_M_contig944:5434..5523Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig944 5435..5523 -
1697105155.9949152-CDS-S-firma_M_contig944:5434..55231697105155.9949152-CDS-S-firma_M_contig944:5434..5523Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig944 5435..5523 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig944.20422.1prot_S-firma_M_contig944.20422.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig944 3044..5523 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig944.20422.1

>prot_S-firma_M_contig944.20422.1 ID=prot_S-firma_M_contig944.20422.1|Name=mRNA_S-firma_M_contig944.20422.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=377bp
MRGPSNKSVAVVAVTASAGCLSVGYWLIRRFRRRLNQSKALRVGGVSRPD
AATLTAGDYVRLRGTVAAGARVLESPMKGVSCVAYRVNVVRVVDSRTAKK
KASVTGMWGVLGGLASVIPWLCSFATTAQVDTEKWDTVYQAISSRGETVE
IFLDESEANAISSLEAVATGKRRPRVRVDLAGAEFFSMEEVASEFEPEKV
TGQASSRTQLGYRTTEEVRVRLWDRAVVRRPQRLTRFSVLCTDLQSVLPI
AVAALVFRSPRVALAKLVFASATFAVHVASKGKPHRACILSCFKNIAIAS
KQATTQEVAIKSLPTHTFLLQKYRQREQASHTQEVAIKSLPTPRAVQIVD
RTLGKKPPMGRNPFNGRAKSWAVGQG*
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mRNA from alignment at S-firma_M_contig944:2873..5564-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig944.20422.1 ID=mRNA_S-firma_M_contig944.20422.1|Name=mRNA_S-firma_M_contig944.20422.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=2692bp|location=Sequence derived from alignment at S-firma_M_contig944:2873..5564- (Sphaerotrichia firma Sfir_13m male)
GGGATGTGATGTGATGCATCCATGTGCAGCAGAGGCGTACGATGCGTGGG
CCCAGCAACAAATCGGTCGCCGTAGTTGCGGTGACGGCCTCTGCAGGTTG
CCTTTCTGTGGGATATTGGCTTATCCGGAGGTAGGTTCTCTGCTGTTTGT
CAATGTTTGTTAGTGAACCGCACCTCTTGATCGTTCTGAGGAGAGATAAC
ACCCCGCCCTTCGCGAGCGTAGATTGGGGACCTTTTAGCGGACCTTTTAG
CGGTTCAGGTGTGGGTTTTTGCGCAGCCCATTTCTTAAACAAACAACTCG
TCAGGTGTCTTTCGAAACCTTTAACTTTATTGACGTACCAAGGATCTTGA
AGCCGGCGTCTCAGAATGGAAATCCAACAGCACCTACTGCTGTAGTCTAC
AGCAGCGAGCGCATGTTCCCTGCTGTTCGTGCGTATACTACGATGATACA
TACAACCGCAGCAATCGTGCTGTCCCTCCCGGACGTAGCTCCGTACTGCT
GTAGGCCGTTCTTTGTCGTGCTAAAATACGGCGAGATATAGTCTAGGGTT
GTGCGGCGGTTGCTTTTGTTCCGGGAGCCCTGTCCTCGCGGACACGTTCA
GCTTGGTCCGCGCAGCCTCGTTTTCCCCCGCAGCGGCTGATAGCTAGACT
ACACCAGCAAAGCGAACGCTGTTGCCCTCCTCGTCAAAATTCAATATTCG
ACACAGGTTCCGGCGCAGGCTCAACCAGAGCAAAGCCCTCCGCGTCGGAG
GCGTTTCTCGCCCAGATGCGGCCACGCTTACGGCGGGCGACTACGTCCGA
TTGAGAGGCACCGTGGCGGCCGGGGCGCGGGTGCTGGAGAGCCCCATGAA
GGGCGTCTCTTGCGTGGCCTACCGCGTCAACGTTGTGAGGGTTGTGGACT
CTAGGACAGCGAAGAAGAAGGTATGTGCATGTAACCATGCCCGCCGTAAG
TCGCCGGCTTTGTGTTGGCGGTGGTGGACAGCAGGGTGGGTCTTTGAGTG
ACAAAAATGAAAAGTGGAATCAAAGACAACACCTCCCCACTTTGGAGGCG
GGACTCCCATCATGGGCTCAAAACGGTATTCCGTGCAGTGATGCAATATG
GGTCCGGCCGAGTAGTGGATTCCTTTGCTTTGTGCATGTGAACCGAACTC
TGCGAGCAGTCAAGGCAGTATTCGTCGTTCTGCCTGCGAAATGGTCCGAC
TCTCGCTCCACCTCTCTCAACCGCGCTTGCGGCGTCGTGTGTCCCGCCGT
ACCATACCATGCCCCGGGGGTGTTGCTTTCCTCCTGCTGCTGCTGCTGCT
GCTGGGGGCAGGCATCGGTCACGGGGATGTGGGGGGTACTGGGGGGTTTG
GCCTCCGTCATTCCCTGGCTGTGCTCCTTCGCCACAACGGCACAGGTGAG
GCCACCCTCCTTTCTTCTCATCTAGTCGATGTGCTGTTCGAAGGGGCGAC
TTTGTGGTCTTCCGTGTCGGTGTGCTTCCTGCAGGTGCGCTTCTCAAACC
TGGTACATACTAAATACGAACTGCTGCTGATGCCTGTTTGCCGCGGCCTC
CAAACACGGGAGTTTGGCGGGGATGGCCGCACCATGGCACGGTTAAGATC
AGATCATCGCCATTGCGCACACCCCGGCCCCTCGAATCCAAAGCTTATAG
CAGTTCGTGTTGGCGTTTTTTTCCCAACACGGGACCCCTTTCCAGGTGGA
CACCGAGAAGTGGGATACCGTGTACCAGGCCATCAGCAGCAGGGGGGAGA
CCGTCGAAATCTTCCTCGACGAGTCGGAAGCCAACGCCATCTCGAGCCTG
GAGGCGGTAGCCACAGGGAAGCGACGACCCCGAGTCAGGGTTGATCTGGC
GGGAGCAGAGTTTTTCTCGATGGAGGAGGTGGCTTCGGAGTTCGAGCCGG
AGAAGGTCACCGGGCAAGCTTCGTCCAGGACACAGCTGGGGTACAGAACC
ACGGAGGAGGTGCGCGTGCGGCTTTGGGACAGAGCGGTGGTTCGAAGACC
TCAACGCTTGACAAGGTTTTCGGTGCTATGCACCGATCTCCAGAGCGTCT
TGCCTATTGCTGTAGCAGCGCTCGTGTTTCGTTCGCCCCGCGTCGCGTTG
GCAAAGCTAGTTTTTGCCTCGGCGACCTTCGCCGTCCATGTCGCAAGCAA
AGGAAAGCCGCACCGGGCATGCATACTTTCCTGCTTCAAAAACATCGCCA
TCGCGAGCAAGCAAGCCACCACACAAGAGGTGGCGATCAAGTCCCTCCCG
ACTCATACTTTCCTGCTTCAAAAATATCGCCAGCGCGAACAAGCAAGCCA
CACACAAGAGGTGGCGATCAAGTCCCTCCCGACTCATACTTTCCTGCTTC
GAAAACATCGCCAGCGCGAGCAAGCAAGCCACCACACAAGAGGTGGCGAT
CAAGTCCCTCCCGACCCCGCGCGCGGTGCAGATAGTCGACAGGACACTGG
GGAAGAAACCTCCAATGGGAAGGAACCCTTTCAATGGCCGCGCCAAATCG
TGGGCGGTGGGGCAGGGTTAAGCGTGTCAAGAATTGATGGATTGAGCGGA
ACCCCTGATGGCAAGACCTTGTCTTCGCAGGTTGGACGTAGACTGTTTAA
CGTCGTTCGGCAGAAAAACAAAACGACAATCTCCGTAGAAGTGTTGCGTG
TTAAGTAAATGACCAAGACGCTACAACTACGGCGCACGCCGC
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Coding sequence (CDS) from alignment at S-firma_M_contig944:2873..5564-

>mRNA_S-firma_M_contig944.20422.1 ID=mRNA_S-firma_M_contig944.20422.1|Name=mRNA_S-firma_M_contig944.20422.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=2262bp|location=Sequence derived from alignment at S-firma_M_contig944:2873..5564- (Sphaerotrichia firma Sfir_13m male)
ATGCGTGGGCCCAGCAACAAATCGGTCGCCGTAGTTGCGGTGACGGCCTC
TGCAGGTTGCCTTTCTGTGGGATATTGGCTTATCCGGAGATGCGTGGGCC
CAGCAACAAATCGGTCGCCGTAGTTGCGGTGACGGCCTCTGCAGGTTGCC
TTTCTGTGGGATATTGGCTTATCCGGAGGTTCCGGCGCAGGCTCAACCAG
AGCAAAGCCCTCCGCGTCGGAGGCGTTTCTCGCCCAGATGCGGCCACGCT
TACGGCGGGCGACTACGTCCGATTGAGAGGCACCGTGGCGGCCGGGGCGC
GGGTGCTGGAGAGCCCCATGAAGGGCGTCTCTTGCGTGGCCTACCGCGTC
AACGTTGTGAGGGTTGTGGACTCTAGGACAGCGAAGAAGAAGGTTCCGGC
GCAGGCTCAACCAGAGCAAAGCCCTCCGCGTCGGAGGCGTTTCTCGCCCA
GATGCGGCCACGCTTACGGCGGGCGACTACGTCCGATTGAGAGGCACCGT
GGCGGCCGGGGCGCGGGTGCTGGAGAGCCCCATGAAGGGCGTCTCTTGCG
TGGCCTACCGCGTCAACGTTGTGAGGGTTGTGGACTCTAGGACAGCGAAG
AAGAAGGCATCGGTCACGGGGATGTGGGGGGTACTGGGGGGTTTGGCCTC
CGTCATTCCCTGGCTGTGCTCCTTCGCCACAACGGCACAGGCATCGGTCA
CGGGGATGTGGGGGGTACTGGGGGGTTTGGCCTCCGTCATTCCCTGGCTG
TGCTCCTTCGCCACAACGGCACAGGTGGACACCGAGAAGTGGGATACCGT
GTACCAGGCCATCAGCAGCAGGGGGGAGACCGTCGAAATCTTCCTCGACG
AGTCGGAAGCCAACGCCATCTCGAGCCTGGAGGCGGTAGCCACAGGGAAG
CGACGACCCCGAGTCAGGGTTGATCTGGCGGGAGCAGAGTTTTTCTCGAT
GGAGGAGGTGGCTTCGGAGTTCGAGCCGGAGAAGGTCACCGGGCAAGCTT
CGTCCAGGACACAGCTGGGGTACAGAACCACGGAGGAGGTGCGCGTGCGG
CTTTGGGACAGAGCGGTGGTTCGAAGACCTCAACGCTTGACAAGGTTTTC
GGTGCTATGCACCGATCTCCAGAGCGTCTTGCCTATTGCTGTAGCAGCGC
TCGTGTTTCGTTCGCCCCGCGTCGCGTTGGCAAAGCTAGTTTTTGCCTCG
GCGACCTTCGCCGTCCATGTCGCAAGCAAAGGAAAGCCGCACCGGGCATG
CATACTTTCCTGCTTCAAAAACATCGCCATCGCGAGCAAGCAAGCCACCA
CACAAGAGGTGGCGATCAAGTCCCTCCCGACTCATACTTTCCTGCTTCAA
AAATATCGCCAGCGCGAACAAGCAAGCCACACACAAGAGGTGGACACCGA
GAAGTGGGATACCGTGTACCAGGCCATCAGCAGCAGGGGGGAGACCGTCG
AAATCTTCCTCGACGAGTCGGAAGCCAACGCCATCTCGAGCCTGGAGGCG
GTAGCCACAGGGAAGCGACGACCCCGAGTCAGGGTTGATCTGGCGGGAGC
AGAGTTTTTCTCGATGGAGGAGGTGGCTTCGGAGTTCGAGCCGGAGAAGG
TCACCGGGCAAGCTTCGTCCAGGACACAGCTGGGGTACAGAACCACGGAG
GAGGTGCGCGTGCGGCTTTGGGACAGAGCGGTGGTTCGAAGACCTCAACG
CTTGACAAGGTTTTCGGTGCTATGCACCGATCTCCAGAGCGTCTTGCCTA
TTGCTGTAGCAGCGCTCGTGTTTCGTTCGCCCCGCGTCGCGTTGGCAAAG
CTAGTTTTTGCCTCGGCGACCTTCGCCGTCCATGTCGCAAGCAAAGGAAA
GCCGCACCGGGCATGCATACTTTCCTGCTTCAAAAACATCGCCATCGCGA
GCAAGCAAGCCACCACACAAGAGGTGGCGATCAAGTCCCTCCCGACTCAT
ACTTTCCTGCTTCAAAAATATCGCCAGCGCGAACAAGCAAGCCACACACA
AGAGGTGGCGATCAAGTCCCTCCCGACCCCGCGCGCGGTGCAGATAGTCG
ACAGGACACTGGGGAAGAAACCTCCAATGGGAAGGAACCCTTTCAATGGC
CGCGCCAAATCGTGGGCGGTGGGGCAGGGTTAAGTGGCGATCAAGTCCCT
CCCGACCCCGCGCGCGGTGCAGATAGTCGACAGGACACTGGGGAAGAAAC
CTCCAATGGGAAGGAACCCTTTCAATGGCCGCGCCAAATCGTGGGCGGTG
GGGCAGGGTTAA
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